Wall clock time and date at job start Tue Mar 31 2020 18:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46915 * 2 1 4 4 O 1.42902 * 109.47150 * 119.99571 * 2 1 3 5 5 C 1.35484 * 117.00072 * 90.00283 * 4 2 1 6 6 C 1.39631 * 119.97597 * 180.02562 * 5 4 2 7 7 N 1.31533 * 120.03611 * 179.74431 * 6 5 4 8 8 C 1.33210 * 119.99089 * 0.50464 * 7 6 5 9 9 C 1.47903 * 120.02551 * 179.74433 * 8 7 6 10 10 O 1.21542 * 119.99977 * 179.73080 * 9 8 7 11 11 N 1.34778 * 119.99957 * 359.72863 * 9 8 7 12 12 C 1.46502 * 119.99873 * 180.02562 * 11 9 8 13 13 C 1.53000 * 110.91392 * 62.45132 * 12 11 9 14 14 C 1.55448 * 111.01096 * 186.50321 * 12 11 9 15 15 C 1.54321 * 102.96961 * 82.52411 * 14 12 11 16 16 N 1.47026 * 107.26791 * 22.19024 * 15 14 12 17 17 C 1.36940 * 125.64258 * 181.03445 * 16 15 14 18 18 H 1.08003 * 119.99660 * 180.02562 * 17 16 15 19 19 C 1.38811 * 120.00559 * 0.02875 * 17 16 15 20 20 N 1.31617 * 119.99776 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00230 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46764 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46723 * 120.00066 * 21 19 17 24 24 H 1.48499 * 109.47140 * 239.99844 * 21 19 17 25 25 C 1.47419 * 108.70576 * 1.06162 * 16 15 14 26 26 C 1.39393 * 119.94944 * 359.47571 * 8 7 6 27 27 N 1.32081 * 119.96093 * 0.26718 * 26 8 7 28 28 H 1.09002 * 109.47003 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47103 * 300.00473 * 1 2 3 30 30 H 1.08992 * 109.46933 * 60.00131 * 1 2 3 31 31 H 1.08991 * 109.47492 * 239.99515 * 2 1 3 32 32 H 1.09001 * 109.47115 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47063 * 299.99731 * 3 2 1 34 34 H 1.09003 * 109.47621 * 59.99844 * 3 2 1 35 35 H 1.07997 * 119.98084 * 0.02562 * 6 5 4 36 36 H 0.97001 * 120.00073 * 359.97438 * 11 9 8 37 37 H 1.09000 * 109.47194 * 297.54709 * 13 12 11 38 38 H 1.09001 * 109.47578 * 57.55154 * 13 12 11 39 39 H 1.09003 * 109.46933 * 177.54882 * 13 12 11 40 40 H 1.08998 * 110.70855 * 324.15215 * 14 12 11 41 41 H 1.08998 * 110.85957 * 200.96831 * 14 12 11 42 42 H 1.08998 * 109.88101 * 262.77542 * 15 14 12 43 43 H 1.09000 * 109.88483 * 141.60664 * 15 14 12 44 44 H 0.97004 * 120.00521 * 179.97438 * 20 19 17 45 45 H 1.09002 * 110.36926 * 94.70918 * 25 16 15 46 46 H 1.08995 * 110.36556 * 216.92202 * 25 16 15 47 47 H 1.08003 * 120.01979 * 180.25386 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2114 -2.0089 1.0656 6 6 2.6758 -2.7291 2.1681 7 7 2.8705 -4.0264 2.0725 8 6 2.6343 -4.6521 0.9205 9 6 2.8584 -6.1099 0.8106 10 8 2.6380 -6.6812 -0.2393 11 7 3.3070 -6.8049 1.8747 12 6 3.5295 -8.2488 1.7657 13 6 4.6110 -8.5579 0.7286 14 6 3.8869 -8.8636 3.1480 15 6 2.5051 -9.0668 3.8044 16 7 1.5117 -9.1225 2.7219 17 6 0.1605 -9.2731 2.8859 18 1 -0.4882 -9.3028 2.0228 19 6 -0.3756 -9.3876 4.1612 20 7 0.4149 -9.3519 5.2129 21 14 -2.2188 -9.5924 4.3847 22 1 -2.8805 -9.6025 3.0553 23 1 -2.4933 -10.8736 5.0836 24 1 -2.7477 -8.4645 5.1930 25 6 2.2111 -8.9900 1.4310 26 6 2.1703 -3.9329 -0.1797 27 7 1.9706 -2.6310 -0.0802 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5139 -0.8898 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 2.8708 -2.2213 3.1011 36 1 3.4832 -6.3489 2.7125 37 1 4.2820 -8.2157 -0.2526 38 1 5.5335 -8.0455 1.0017 39 1 4.7882 -9.6330 0.6979 40 1 4.4934 -8.1717 3.7323 41 1 4.4005 -9.8173 3.0274 42 1 2.2836 -8.2311 4.4682 43 1 2.4949 -10.0013 4.3653 44 1 0.0404 -9.4316 6.1042 45 1 2.4246 -9.9736 1.0125 46 1 1.6127 -8.4037 0.7338 47 1 1.9745 -4.4397 -1.1131 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046315196.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:12 Heat of formation + Delta-G solvation = -19.667229 kcal Electronic energy + Delta-G solvation = -29212.913249 eV Core-core repulsion = 25203.325342 eV Total energy + Delta-G solvation = -4009.587907 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.61058 -41.15523 -39.89319 -38.71857 -35.82375 -35.37873 -34.41420 -33.61319 -32.14776 -31.25279 -30.29038 -28.21834 -27.51027 -26.49100 -25.96222 -25.27970 -22.99558 -22.39074 -21.95356 -20.49847 -19.75494 -19.40582 -18.95775 -18.43680 -17.20993 -17.04828 -16.64213 -16.38941 -16.22764 -16.06262 -15.62563 -15.61233 -15.16397 -15.13567 -14.56413 -14.31449 -14.10721 -13.87646 -13.54014 -13.48337 -13.37345 -13.26778 -13.10804 -13.05044 -12.92145 -12.85700 -12.74964 -12.47653 -12.15521 -12.02923 -11.98175 -11.91544 -11.77756 -11.70573 -11.58825 -11.08978 -10.71716 -10.38304 -10.09637 -9.83498 -8.85744 -7.85749 -5.19173 -0.68189 -0.16253 1.42206 1.42674 1.53197 1.62508 1.63861 2.07276 2.47398 2.62737 2.80710 2.92192 3.27294 3.32517 3.55742 3.71075 3.81039 3.84946 3.94261 4.02178 4.06024 4.19858 4.20176 4.43185 4.55977 4.65149 4.68767 4.71326 4.78290 4.81600 4.85061 4.89676 4.95312 5.01245 5.05624 5.09302 5.18724 5.23597 5.37478 5.43027 5.62950 5.68010 5.77775 5.86885 5.90313 6.20333 6.35599 6.61358 7.11536 7.15935 7.77950 8.42144 9.24314 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011976 B = 0.003169 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.429243 B = 8833.770424 C =10233.429383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.069 3.931 3 C -0.145 4.145 4 O -0.289 6.289 5 C 0.299 3.701 6 C 0.049 3.951 7 N -0.387 5.387 8 C -0.033 4.033 9 C 0.579 3.421 10 O -0.556 6.556 11 N -0.680 5.680 12 C 0.163 3.837 13 C -0.139 4.139 14 C -0.129 4.129 15 C 0.185 3.815 16 N -0.621 5.621 17 C -0.238 4.238 18 H 0.069 0.931 19 C -0.062 4.062 20 N -0.945 5.945 21 Si 0.973 3.027 22 H -0.272 1.272 23 H -0.288 1.288 24 H -0.291 1.291 25 C 0.127 3.873 26 C 0.158 3.842 27 N -0.505 5.505 28 H 0.040 0.960 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.212 0.788 36 H 0.411 0.589 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.014 0.986 43 H 0.010 0.990 44 H 0.247 0.753 45 H 0.031 0.969 46 H 0.034 0.966 47 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.113 19.948 -9.560 23.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.014 3.986 3 C -0.202 4.202 4 O -0.193 6.193 5 C 0.115 3.885 6 C -0.119 4.119 7 N -0.105 5.105 8 C -0.170 4.170 9 C 0.364 3.636 10 O -0.435 6.435 11 N -0.330 5.330 12 C 0.077 3.923 13 C -0.197 4.197 14 C -0.167 4.167 15 C 0.061 3.939 16 N -0.347 5.347 17 C -0.368 4.368 18 H 0.087 0.913 19 C -0.255 4.255 20 N -0.594 5.594 21 Si 0.801 3.199 22 H -0.197 1.197 23 H -0.215 1.215 24 H -0.218 1.218 25 C 0.001 3.999 26 C 0.000 4.000 27 N -0.235 5.235 28 H 0.059 0.941 29 H 0.087 0.913 30 H 0.112 0.888 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.117 0.883 34 H 0.090 0.910 35 H 0.229 0.771 36 H 0.247 0.753 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.112 0.888 41 H 0.115 0.885 42 H 0.032 0.968 43 H 0.028 0.972 44 H 0.056 0.944 45 H 0.048 0.952 46 H 0.053 0.947 47 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 8.836 19.654 -9.958 23.738 hybrid contribution -1.424 -0.223 0.683 1.595 sum 7.412 19.431 -9.275 22.771 Atomic orbital electron populations 1.22229 0.94079 1.02092 1.04121 1.22773 0.95135 0.94127 0.86616 1.21925 1.02112 0.91723 1.04419 1.86323 1.78725 1.14144 1.40155 1.21451 0.89521 0.86498 0.91052 1.23458 1.00065 0.88653 0.99732 1.68344 1.09432 1.09300 1.23374 1.21835 1.06921 0.95705 0.92552 1.17641 0.76910 0.85052 0.83958 1.90726 1.53085 1.70135 1.29537 1.45656 1.64931 1.08173 1.14207 1.21538 0.94916 0.78964 0.96912 1.21916 0.96812 1.02870 0.98102 1.23156 0.97426 1.01968 0.94135 1.20929 0.85801 0.97834 0.89376 1.44698 1.02561 1.85764 1.01727 1.19353 0.82894 1.42037 0.92477 0.91281 1.25532 1.01984 1.02752 0.95206 1.70159 1.34024 1.57998 0.97268 0.85094 0.80228 0.76961 0.77580 1.19704 1.21489 1.21825 1.22019 0.92879 0.96704 0.88313 1.23587 0.88928 0.87946 0.99559 1.68224 1.19893 1.10541 1.24801 0.94061 0.91339 0.88807 0.89703 0.91612 0.88291 0.91029 0.77135 0.75268 0.92143 0.90612 0.90166 0.88786 0.88545 0.96813 0.97174 0.94383 0.95164 0.94728 0.78990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.42 9.53 71.98 0.69 -1.74 16 2 C 0.07 1.05 3.11 30.60 0.10 1.14 16 3 C -0.14 -1.38 9.56 71.98 0.69 -0.69 16 4 O -0.29 -5.55 9.76 -87.84 -0.86 -6.41 16 5 C 0.30 6.74 7.47 84.92 0.63 7.37 16 6 C 0.05 1.09 11.18 85.07 0.95 2.05 16 7 N -0.39 -10.76 9.70 -183.93 -1.78 -12.54 16 8 C -0.03 -0.98 6.74 41.77 0.28 -0.70 16 9 C 0.58 20.18 7.20 86.80 0.62 20.81 16 10 O -0.56 -21.34 13.13 -3.85 -0.05 -21.39 16 11 N -0.68 -23.31 5.17 -418.97 -2.16 -25.48 16 12 C 0.16 5.71 0.83 5.10 0.00 5.71 16 13 C -0.14 -3.88 8.60 71.98 0.62 -3.26 16 14 C -0.13 -4.45 6.00 31.88 0.19 -4.26 16 15 C 0.19 9.08 5.36 86.73 0.47 9.54 16 16 N -0.62 -33.09 3.39 -692.01 -2.35 -35.44 16 17 C -0.24 -14.05 10.28 84.03 0.86 -13.18 16 18 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 19 C -0.06 -3.61 5.49 84.86 0.47 -3.14 16 20 N -0.95 -57.37 10.31 21.65 0.22 -57.15 16 21 Si 0.97 47.47 29.55 68.60 2.03 49.49 16 22 H -0.27 -12.78 7.11 99.48 0.71 -12.08 16 23 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 24 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 25 C 0.13 5.67 6.10 86.85 0.53 6.20 16 26 C 0.16 4.20 10.76 84.93 0.91 5.12 16 27 N -0.51 -12.30 8.80 -307.09 -2.70 -15.01 16 28 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.08 1.42 6.99 -2.39 -0.02 1.40 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.21 3.24 8.06 -2.91 -0.02 3.21 16 36 H 0.41 13.42 7.84 -92.71 -0.73 12.69 16 37 H 0.06 1.86 6.53 -2.39 -0.02 1.85 16 38 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.08 2.01 8.12 -2.39 -0.02 1.99 16 40 H 0.09 2.74 8.05 -2.39 -0.02 2.72 16 41 H 0.10 2.95 8.03 -2.39 -0.02 2.93 16 42 H 0.01 0.75 7.38 -2.39 -0.02 0.73 16 43 H 0.01 0.55 7.51 -2.39 -0.02 0.53 16 44 H 0.25 14.52 8.31 -92.70 -0.77 13.75 16 45 H 0.03 1.33 8.04 -2.39 -0.02 1.31 16 46 H 0.03 1.68 6.31 -2.39 -0.02 1.67 16 47 H 0.19 4.67 7.64 -2.91 -0.02 4.65 16 Total: -1.00 -72.56 382.99 0.62 -71.95 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: 0.26 Total: 21.00 kcal Atomic # 6 Polarization: 22.96 SS G_CDS: 8.01 Total: 30.97 kcal Atomic # 7 Polarization: -136.84 SS G_CDS: -8.78 Total: -145.61 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -0.91 Total: -27.80 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.03 Total: 49.49 kcal Total: -72.56 0.62 -71.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046315196.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.280 kcal (2) G-P(sol) polarization free energy of solvation -72.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds