Wall clock time and date at job start Tue Mar 31 2020 19:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.58815 * 2 1 4 4 C 1.53189 * 109.58454 * 239.57236 * 2 1 3 5 5 C 1.53045 * 109.31180 * 185.57974 * 4 2 1 6 6 C 1.53035 * 109.53691 * 61.36789 * 5 4 2 7 7 H 1.08994 * 109.52677 * 58.60447 * 6 5 4 8 8 N 1.46500 * 109.49785 * 178.68458 * 6 5 4 9 9 C 1.34775 * 120.00343 * 204.84077 * 8 6 5 10 10 O 1.21684 * 119.99684 * 4.97754 * 9 8 6 11 11 C 1.46762 * 120.00133 * 184.98687 * 9 8 6 12 12 C 1.36941 * 126.93861 * 186.34167 * 11 9 8 13 13 N 1.33567 * 107.86785 * 179.97438 * 12 11 9 14 14 C 1.30250 * 109.64839 * 359.97438 * 13 12 11 15 15 N 1.35180 * 108.97371 * 0.06538 * 14 13 12 16 16 C 1.46501 * 123.69817 * 179.90918 * 15 14 13 17 17 C 1.53469 * 108.16566 * 343.75798 * 16 15 14 18 18 O 1.43053 * 109.59958 * 48.08263 * 17 16 15 19 19 C 1.43424 * 114.12329 * 290.12953 * 18 17 16 20 20 C 1.53195 * 109.31342 * 298.63225 * 6 5 4 21 21 N 1.46927 * 109.58362 * 120.28760 * 2 1 3 22 22 C 1.36933 * 120.63368 * 353.36682 * 21 2 1 23 23 H 1.07998 * 119.99711 * 40.84936 * 22 21 2 24 24 C 1.38813 * 120.00022 * 220.84428 * 22 21 2 25 25 N 1.31609 * 120.00322 * 6.07094 * 24 22 21 26 26 Si 1.86804 * 119.99596 * 186.07369 * 24 22 21 27 27 H 1.48498 * 109.47365 * 89.99910 * 26 24 22 28 28 H 1.48504 * 109.46791 * 210.00227 * 26 24 22 29 29 H 1.48503 * 109.47228 * 329.99810 * 26 24 22 30 30 H 1.09004 * 109.46715 * 299.71726 * 1 2 3 31 31 H 1.09003 * 109.47085 * 59.71233 * 1 2 3 32 32 H 1.08998 * 109.47630 * 179.71428 * 1 2 3 33 33 H 1.09002 * 109.50133 * 305.53301 * 4 2 1 34 34 H 1.09004 * 109.50096 * 65.62808 * 4 2 1 35 35 H 1.09004 * 109.45690 * 301.34106 * 5 4 2 36 36 H 1.09001 * 109.46039 * 181.38771 * 5 4 2 37 37 H 0.97003 * 119.99738 * 24.83317 * 8 6 5 38 38 H 1.08000 * 126.06942 * 359.90764 * 12 11 9 39 39 H 1.08996 * 109.72815 * 103.43734 * 16 15 14 40 40 H 1.08994 * 109.73493 * 224.07710 * 16 15 14 41 41 H 1.09002 * 109.45095 * 168.21664 * 17 16 15 42 42 H 1.09004 * 109.44832 * 288.12594 * 17 16 15 43 43 H 1.09001 * 109.79377 * 290.00564 * 19 18 17 44 44 H 1.09002 * 109.83751 * 169.19140 * 19 18 17 45 45 H 1.08996 * 109.58860 * 174.42269 * 20 6 5 46 46 H 1.09004 * 109.58219 * 294.85241 * 20 6 5 47 47 H 0.96999 * 120.00344 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7309 -1.2445 5 6 3.5675 -0.8495 -1.1691 6 6 3.9568 -1.6657 0.0655 7 1 3.4987 -2.6531 0.0088 8 7 5.4141 -1.8053 0.1198 9 6 5.9676 -2.8456 0.7739 10 8 5.2586 -3.7170 1.2416 11 6 7.4254 -2.9274 0.9223 12 6 8.1420 -3.9693 1.4478 13 7 9.4362 -3.6427 1.3986 14 6 9.5694 -2.4585 0.8728 15 7 8.3456 -1.9753 0.5625 16 6 8.1208 -0.6619 -0.0465 17 6 9.3994 0.1696 0.1238 18 8 10.5334 -0.6073 -0.2723 19 6 10.8439 -1.6876 0.6186 20 6 3.4650 -0.9454 1.3249 21 7 2.0225 -0.6981 1.1953 22 6 1.1537 -1.1100 2.1703 23 1 0.2031 -1.5444 1.8982 24 6 1.4949 -0.9693 3.5085 25 7 2.5973 -0.3331 3.8433 26 14 0.3891 -1.6830 4.8342 27 1 0.8077 -3.0765 5.1308 28 1 0.4986 -0.8604 6.0658 29 1 -1.0182 -1.6792 4.3601 30 1 -0.3633 0.5095 0.8926 31 1 -0.3633 0.5183 -0.8874 32 1 -0.3634 -1.0276 -0.0051 33 1 1.6029 -1.7269 -1.2892 34 1 1.7660 -0.1695 -2.1367 35 1 4.0061 0.1460 -1.0995 36 1 3.9378 -1.3474 -2.0652 37 1 5.9807 -1.1491 -0.3152 38 1 7.7332 -4.8911 1.8346 39 1 7.8980 -0.7813 -1.1067 40 1 7.2887 -0.1634 0.4505 41 1 9.3360 1.0640 -0.4960 42 1 9.5070 0.4599 1.1690 43 1 11.2295 -1.2919 1.5582 44 1 11.5862 -2.3421 0.1616 45 1 3.6517 -1.5691 2.1991 46 1 3.9904 0.0037 1.4316 47 1 2.8355 -0.2345 4.7784 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071584742.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:07 Heat of formation + Delta-G solvation = 8.018317 kcal Electronic energy + Delta-G solvation = -30074.946389 eV Core-core repulsion = 26066.559017 eV Total energy + Delta-G solvation = -4008.387372 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.67596 -39.42151 -38.64235 -37.54921 -35.00698 -34.10641 -32.80989 -31.16697 -30.60838 -30.10403 -29.87756 -26.72559 -25.86538 -24.99273 -24.35740 -22.76895 -22.25068 -20.71504 -20.40966 -19.93528 -19.26994 -18.07729 -17.22142 -16.54209 -16.35240 -15.85728 -15.72229 -15.55295 -15.26299 -14.98974 -14.29723 -14.24139 -14.03532 -13.85652 -13.67389 -13.42582 -13.37576 -13.05577 -12.79357 -12.47975 -12.26191 -11.92059 -11.73541 -11.47377 -11.13793 -10.92234 -10.80851 -10.71290 -10.65221 -10.48291 -10.35124 -10.28998 -10.02232 -9.95938 -9.89050 -9.60752 -9.50876 -8.78451 -8.51029 -8.43983 -6.49604 -5.80444 -3.38414 1.24636 2.18587 2.69238 3.15144 3.29651 3.39392 3.45526 3.45840 3.50533 3.74132 3.96870 4.37139 4.46414 4.51132 4.58386 4.83746 4.96430 5.06537 5.08577 5.17841 5.27077 5.30755 5.42577 5.48155 5.50920 5.59431 5.81238 5.91556 6.01911 6.22213 6.24577 6.25999 6.36216 6.40321 6.43999 6.48950 6.58405 6.65060 6.75380 6.80080 7.02760 7.12741 7.21622 7.58550 7.63716 7.80588 7.84089 8.39889 8.53468 9.21204 9.80189 10.42786 11.27142 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014011 B = 0.003499 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.898626 B = 8001.312129 C = 8891.083380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.166 3.834 3 H 0.025 0.975 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.114 3.886 7 H 0.087 0.913 8 N -0.722 5.722 9 C 0.590 3.410 10 O -0.514 6.514 11 C -0.063 4.063 12 C 0.057 3.943 13 N -0.480 5.480 14 C 0.181 3.819 15 N -0.439 5.439 16 C 0.054 3.946 17 C 0.050 3.950 18 O -0.371 6.371 19 C 0.149 3.851 20 C 0.175 3.825 21 N -0.581 5.581 22 C -0.259 4.259 23 H 0.064 0.936 24 C 0.018 3.982 25 N -0.899 5.899 26 Si 0.900 3.100 27 H -0.285 1.285 28 H -0.290 1.290 29 H -0.277 1.277 30 H 0.062 0.938 31 H 0.036 0.964 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.051 0.949 37 H 0.385 0.615 38 H 0.187 0.813 39 H 0.101 0.899 40 H 0.110 0.890 41 H 0.125 0.875 42 H 0.072 0.928 43 H 0.088 0.912 44 H 0.129 0.871 45 H 0.081 0.919 46 H 0.017 0.983 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.923 2.917 -11.078 18.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.059 3.941 3 H 0.042 0.958 4 C -0.166 4.166 5 C -0.154 4.154 6 C 0.009 3.991 7 H 0.105 0.895 8 N -0.375 5.375 9 C 0.375 3.625 10 O -0.388 6.388 11 C -0.179 4.179 12 C -0.096 4.096 13 N -0.199 5.199 14 C -0.081 4.081 15 N -0.124 5.124 16 C -0.068 4.068 17 C -0.028 4.028 18 O -0.288 6.288 19 C 0.071 3.929 20 C 0.048 3.952 21 N -0.304 5.304 22 C -0.389 4.389 23 H 0.081 0.919 24 C -0.182 4.182 25 N -0.541 5.541 26 Si 0.730 3.270 27 H -0.211 1.211 28 H -0.216 1.216 29 H -0.202 1.202 30 H 0.081 0.919 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.220 0.780 38 H 0.204 0.796 39 H 0.119 0.881 40 H 0.128 0.872 41 H 0.143 0.857 42 H 0.090 0.910 43 H 0.106 0.894 44 H 0.147 0.853 45 H 0.099 0.901 46 H 0.035 0.965 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 14.089 2.069 -10.523 17.706 hybrid contribution -1.102 0.434 0.556 1.308 sum 12.987 2.503 -9.968 16.561 Atomic orbital electron populations 1.21766 0.95856 1.01358 1.00168 1.20521 0.93203 0.93456 0.86904 0.95777 1.22056 0.93994 1.01453 0.99090 1.21674 0.97742 0.99415 0.96550 1.22140 0.77028 1.01346 0.98616 0.89532 1.46295 1.09158 1.26700 1.55298 1.16769 0.84309 0.82438 0.78966 1.90891 1.61000 1.38838 1.48111 1.21303 0.90897 0.93247 1.12465 1.22729 0.87529 0.98967 1.00386 1.69828 1.19564 1.11150 1.19355 1.24093 0.88301 0.93298 1.02415 1.45230 1.06916 1.14689 1.45589 1.22985 1.01707 0.81787 1.00338 1.23017 0.83210 0.93895 1.02641 1.88155 1.47385 1.43319 1.49893 1.21312 0.89748 0.86334 0.95494 1.20985 0.84397 0.96343 0.93517 1.43889 1.02173 1.64854 1.19495 1.18993 1.00225 1.34681 0.84967 0.91865 1.25403 0.97294 0.97470 0.98074 1.69937 1.24618 1.42964 1.16550 0.86338 0.80533 0.78717 0.81455 1.21124 1.21642 1.20200 0.91889 0.94472 0.92902 0.91987 0.92603 0.92402 0.93074 0.77982 0.79576 0.88111 0.87187 0.85671 0.91004 0.89398 0.85293 0.90084 0.96458 0.93616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 8.06 37.16 0.30 -2.19 16 2 C 0.17 3.31 3.50 -67.60 -0.24 3.08 16 3 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -2.07 5.37 -26.61 -0.14 -2.22 16 5 C -0.12 -1.78 5.35 -26.69 -0.14 -1.93 16 6 C 0.11 2.14 2.65 -67.81 -0.18 1.96 16 7 H 0.09 1.87 7.51 -51.93 -0.39 1.48 16 8 N -0.72 -11.65 4.96 -54.97 -0.27 -11.93 16 9 C 0.59 10.77 7.75 -12.82 -0.10 10.67 16 10 O -0.51 -11.48 16.55 5.20 0.09 -11.40 16 11 C -0.06 -1.00 6.94 -82.49 -0.57 -1.57 16 12 C 0.06 0.89 11.68 -17.27 -0.20 0.69 16 13 N -0.48 -7.04 11.19 -10.29 -0.12 -7.16 16 14 C 0.18 2.24 7.78 -155.29 -1.21 1.04 16 15 N -0.44 -5.52 3.16 -109.67 -0.35 -5.87 16 16 C 0.05 0.47 5.51 -3.80 -0.02 0.45 16 17 C 0.05 0.33 6.84 37.40 0.26 0.58 16 18 O -0.37 -3.08 10.78 -35.23 -0.38 -3.46 16 19 C 0.15 1.23 7.29 36.21 0.26 1.50 16 20 C 0.17 4.10 4.78 -3.71 -0.02 4.08 16 21 N -0.58 -14.15 2.93 -164.77 -0.48 -14.63 16 22 C -0.26 -6.99 8.21 -15.06 -0.12 -7.11 16 23 H 0.06 1.69 6.60 -52.49 -0.35 1.34 16 24 C 0.02 0.50 5.11 -17.43 -0.09 0.41 16 25 N -0.90 -26.17 11.54 55.49 0.64 -25.53 16 26 Si 0.90 22.00 29.56 -169.99 -5.02 16.98 16 27 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 28 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 29 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 30 H 0.06 1.28 7.68 -51.93 -0.40 0.88 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 1.00 7.42 -51.93 -0.39 0.61 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.39 4.87 5.03 -40.82 -0.21 4.67 16 38 H 0.19 2.70 8.06 -52.49 -0.42 2.28 16 39 H 0.10 0.72 7.94 -51.93 -0.41 0.31 16 40 H 0.11 0.96 6.98 -51.93 -0.36 0.59 16 41 H 0.13 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 43 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.13 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.08 2.27 6.72 -51.93 -0.35 1.92 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 370.57 15.07 5.58 5.58 Total: -1.00 -34.38 370.57 -9.58 -43.97 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -7.05 Total: 4.00 kcal Atomic # 6 Polarization: 11.66 SS G_CDS: -2.22 Total: 9.44 kcal Atomic # 7 Polarization: -64.54 SS G_CDS: -0.58 Total: -65.12 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -0.29 Total: -14.85 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.38 -9.58 -43.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071584742.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.984 kcal (2) G-P(sol) polarization free energy of solvation -34.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds