Wall clock time and date at job start Tue Mar 31 2020 19:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.58815 * 2 1 4 4 C 1.53189 * 109.58454 * 239.57236 * 2 1 3 5 5 C 1.53045 * 109.31180 * 185.57974 * 4 2 1 6 6 C 1.53035 * 109.53691 * 61.36789 * 5 4 2 7 7 H 1.08994 * 109.52677 * 58.60447 * 6 5 4 8 8 N 1.46500 * 109.49785 * 178.68458 * 6 5 4 9 9 C 1.34775 * 120.00343 * 204.84077 * 8 6 5 10 10 O 1.21684 * 119.99684 * 4.97754 * 9 8 6 11 11 C 1.46762 * 120.00133 * 184.98687 * 9 8 6 12 12 C 1.36941 * 126.93861 * 186.34167 * 11 9 8 13 13 N 1.33567 * 107.86785 * 179.97438 * 12 11 9 14 14 C 1.30250 * 109.64839 * 359.97438 * 13 12 11 15 15 N 1.35180 * 108.97371 * 0.06538 * 14 13 12 16 16 C 1.46501 * 123.69817 * 179.90918 * 15 14 13 17 17 C 1.53469 * 108.16566 * 343.75798 * 16 15 14 18 18 O 1.43053 * 109.59958 * 48.08263 * 17 16 15 19 19 C 1.43424 * 114.12329 * 290.12953 * 18 17 16 20 20 C 1.53195 * 109.31342 * 298.63225 * 6 5 4 21 21 N 1.46927 * 109.58362 * 120.28760 * 2 1 3 22 22 C 1.36933 * 120.63368 * 353.36682 * 21 2 1 23 23 H 1.07998 * 119.99711 * 40.84936 * 22 21 2 24 24 C 1.38813 * 120.00022 * 220.84428 * 22 21 2 25 25 N 1.31609 * 120.00322 * 6.07094 * 24 22 21 26 26 Si 1.86804 * 119.99596 * 186.07369 * 24 22 21 27 27 H 1.48498 * 109.47365 * 89.99910 * 26 24 22 28 28 H 1.48504 * 109.46791 * 210.00227 * 26 24 22 29 29 H 1.48503 * 109.47228 * 329.99810 * 26 24 22 30 30 H 1.09004 * 109.46715 * 299.71726 * 1 2 3 31 31 H 1.09003 * 109.47085 * 59.71233 * 1 2 3 32 32 H 1.08998 * 109.47630 * 179.71428 * 1 2 3 33 33 H 1.09002 * 109.50133 * 305.53301 * 4 2 1 34 34 H 1.09004 * 109.50096 * 65.62808 * 4 2 1 35 35 H 1.09004 * 109.45690 * 301.34106 * 5 4 2 36 36 H 1.09001 * 109.46039 * 181.38771 * 5 4 2 37 37 H 0.97003 * 119.99738 * 24.83317 * 8 6 5 38 38 H 1.08000 * 126.06942 * 359.90764 * 12 11 9 39 39 H 1.08996 * 109.72815 * 103.43734 * 16 15 14 40 40 H 1.08994 * 109.73493 * 224.07710 * 16 15 14 41 41 H 1.09002 * 109.45095 * 168.21664 * 17 16 15 42 42 H 1.09004 * 109.44832 * 288.12594 * 17 16 15 43 43 H 1.09001 * 109.79377 * 290.00564 * 19 18 17 44 44 H 1.09002 * 109.83751 * 169.19140 * 19 18 17 45 45 H 1.08996 * 109.58860 * 174.42269 * 20 6 5 46 46 H 1.09004 * 109.58219 * 294.85241 * 20 6 5 47 47 H 0.96999 * 120.00344 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7309 -1.2445 5 6 3.5675 -0.8495 -1.1691 6 6 3.9568 -1.6657 0.0655 7 1 3.4987 -2.6531 0.0088 8 7 5.4141 -1.8053 0.1198 9 6 5.9676 -2.8456 0.7739 10 8 5.2586 -3.7170 1.2416 11 6 7.4254 -2.9274 0.9223 12 6 8.1420 -3.9693 1.4478 13 7 9.4362 -3.6427 1.3986 14 6 9.5694 -2.4585 0.8728 15 7 8.3456 -1.9753 0.5625 16 6 8.1208 -0.6619 -0.0465 17 6 9.3994 0.1696 0.1238 18 8 10.5334 -0.6073 -0.2723 19 6 10.8439 -1.6876 0.6186 20 6 3.4650 -0.9454 1.3249 21 7 2.0225 -0.6981 1.1953 22 6 1.1537 -1.1100 2.1703 23 1 0.2031 -1.5444 1.8982 24 6 1.4949 -0.9693 3.5085 25 7 2.5973 -0.3331 3.8433 26 14 0.3891 -1.6830 4.8342 27 1 0.8077 -3.0765 5.1308 28 1 0.4986 -0.8604 6.0658 29 1 -1.0182 -1.6792 4.3601 30 1 -0.3633 0.5095 0.8926 31 1 -0.3633 0.5183 -0.8874 32 1 -0.3634 -1.0276 -0.0051 33 1 1.6029 -1.7269 -1.2892 34 1 1.7660 -0.1695 -2.1367 35 1 4.0061 0.1460 -1.0995 36 1 3.9378 -1.3474 -2.0652 37 1 5.9807 -1.1491 -0.3152 38 1 7.7332 -4.8911 1.8346 39 1 7.8980 -0.7813 -1.1067 40 1 7.2887 -0.1634 0.4505 41 1 9.3360 1.0640 -0.4960 42 1 9.5070 0.4599 1.1690 43 1 11.2295 -1.2919 1.5582 44 1 11.5862 -2.3421 0.1616 45 1 3.6517 -1.5691 2.1991 46 1 3.9904 0.0037 1.4316 47 1 2.8355 -0.2345 4.7784 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071584742.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:06 Heat of formation + Delta-G solvation = -16.648864 kcal Electronic energy + Delta-G solvation = -30076.016038 eV Core-core repulsion = 26066.559017 eV Total energy + Delta-G solvation = -4009.457021 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.71020 -40.88838 -39.43931 -39.07795 -36.35797 -35.31403 -34.60000 -32.50430 -31.89590 -31.57837 -30.93793 -27.99022 -27.31860 -26.59385 -25.16414 -24.24273 -23.71576 -22.06632 -21.84834 -21.12699 -20.64507 -19.09783 -18.37521 -18.06749 -17.48304 -17.32481 -16.89986 -16.48564 -16.35482 -16.27167 -15.82921 -15.56902 -15.41385 -15.26853 -15.00507 -14.93785 -14.57691 -14.30827 -14.18612 -13.84495 -13.51335 -13.08994 -12.92316 -12.80488 -12.75495 -12.59911 -12.46760 -12.32000 -12.16710 -12.01694 -11.76097 -11.64807 -11.48772 -11.25309 -11.16192 -11.09921 -10.83827 -10.60334 -10.29596 -9.65689 -8.49619 -7.89017 -5.49995 0.06927 1.25378 1.39379 1.43042 1.49539 1.57538 1.93497 2.14670 2.46508 2.59197 2.93967 3.22130 3.28113 3.41513 3.68174 3.79424 3.83536 3.92961 4.05321 4.05648 4.19876 4.26522 4.29718 4.36380 4.46496 4.55553 4.56360 4.66463 4.69707 4.76080 4.78884 4.86498 5.01237 5.04143 5.14283 5.23115 5.25541 5.27135 5.34141 5.52848 5.58420 5.67396 5.67895 5.72317 5.86145 6.30900 6.46023 6.68865 7.00691 7.16428 7.83536 8.39179 9.14350 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014011 B = 0.003499 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.898626 B = 8001.312129 C = 8891.083380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.155 3.845 3 H 0.024 0.976 4 C -0.118 4.118 5 C -0.107 4.107 6 C 0.128 3.872 7 H 0.055 0.945 8 N -0.706 5.706 9 C 0.589 3.411 10 O -0.567 6.567 11 C -0.087 4.087 12 C 0.047 3.953 13 N -0.503 5.503 14 C 0.194 3.806 15 N -0.437 5.437 16 C 0.042 3.958 17 C 0.051 3.949 18 O -0.374 6.374 19 C 0.150 3.850 20 C 0.189 3.811 21 N -0.601 5.601 22 C -0.257 4.257 23 H 0.064 0.936 24 C -0.039 4.039 25 N -0.931 5.931 26 Si 0.956 3.044 27 H -0.294 1.294 28 H -0.291 1.291 29 H -0.261 1.261 30 H 0.036 0.964 31 H 0.078 0.922 32 H 0.043 0.957 33 H 0.051 0.949 34 H 0.098 0.902 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.406 0.594 38 H 0.184 0.816 39 H 0.122 0.878 40 H 0.108 0.892 41 H 0.160 0.840 42 H 0.075 0.925 43 H 0.110 0.890 44 H 0.149 0.851 45 H 0.024 0.976 46 H 0.004 0.996 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.027 4.727 -13.963 21.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.050 3.950 3 H 0.041 0.959 4 C -0.157 4.157 5 C -0.145 4.145 6 C 0.022 3.978 7 H 0.073 0.927 8 N -0.359 5.359 9 C 0.376 3.624 10 O -0.446 6.446 11 C -0.204 4.204 12 C -0.107 4.107 13 N -0.223 5.223 14 C -0.069 4.069 15 N -0.121 5.121 16 C -0.079 4.079 17 C -0.025 4.025 18 O -0.290 6.290 19 C 0.072 3.928 20 C 0.062 3.938 21 N -0.326 5.326 22 C -0.388 4.388 23 H 0.082 0.918 24 C -0.236 4.236 25 N -0.575 5.575 26 Si 0.784 3.216 27 H -0.221 1.221 28 H -0.217 1.217 29 H -0.185 1.185 30 H 0.056 0.944 31 H 0.096 0.904 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.116 0.884 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.244 0.756 38 H 0.201 0.799 39 H 0.140 0.860 40 H 0.126 0.874 41 H 0.178 0.822 42 H 0.093 0.907 43 H 0.128 0.872 44 H 0.166 0.834 45 H 0.043 0.957 46 H 0.022 0.978 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 15.195 3.939 -13.476 20.688 hybrid contribution -1.385 -0.086 1.409 1.977 sum 13.810 3.853 -12.067 18.739 Atomic orbital electron populations 1.21703 0.94862 1.01011 1.00916 1.20816 0.94233 0.93387 0.86540 0.95862 1.21963 0.94324 1.00940 0.98519 1.21657 0.97369 1.00005 0.95459 1.21699 0.78154 0.99669 0.98294 0.92655 1.46051 1.08385 1.26675 1.54776 1.17117 0.85271 0.81992 0.78014 1.90853 1.62551 1.40889 1.50296 1.20853 0.89946 0.94817 1.14738 1.22860 0.88341 0.99177 1.00286 1.69835 1.18811 1.12759 1.20861 1.25029 0.89535 0.92600 0.99755 1.45423 1.06214 1.15357 1.45138 1.23412 1.03219 0.80161 1.01147 1.23237 0.81419 0.94062 1.03819 1.88167 1.47754 1.43080 1.50038 1.21659 0.87807 0.86387 0.96929 1.20640 0.84582 0.94857 0.93757 1.44179 1.02072 1.65798 1.20516 1.19271 1.00340 1.33391 0.85791 0.91844 1.26093 0.98684 0.98655 1.00150 1.70082 1.26261 1.45039 1.16143 0.85453 0.79795 0.77244 0.79131 1.22088 1.21726 1.18501 0.94445 0.90353 0.93783 0.92999 0.88373 0.90374 0.89665 0.75567 0.79929 0.86043 0.87410 0.82237 0.90661 0.87195 0.83379 0.95706 0.97833 0.94427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.54 8.06 71.98 0.58 -3.96 16 2 C 0.16 6.00 3.50 44.97 0.16 6.15 16 3 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 4 C -0.12 -3.50 5.37 30.67 0.16 -3.34 16 5 C -0.11 -2.96 5.35 30.62 0.16 -2.80 16 6 C 0.13 4.83 2.65 45.07 0.12 4.95 16 7 H 0.06 2.47 7.51 -2.39 -0.02 2.46 16 8 N -0.71 -22.77 4.96 -446.06 -2.21 -24.98 16 9 C 0.59 22.43 7.75 86.47 0.67 23.10 16 10 O -0.57 -27.19 16.55 -4.30 -0.07 -27.26 16 11 C -0.09 -2.82 6.94 40.23 0.28 -2.54 16 12 C 0.05 1.54 11.68 84.12 0.98 2.52 16 13 N -0.50 -14.68 11.19 -186.47 -2.09 -16.76 16 14 C 0.19 4.52 7.78 138.29 1.08 5.59 16 15 N -0.44 -10.50 3.16 -500.88 -1.58 -12.09 16 16 C 0.04 0.62 5.51 86.54 0.48 1.09 16 17 C 0.05 0.49 6.84 72.14 0.49 0.99 16 18 O -0.37 -4.81 10.78 -148.98 -1.61 -6.42 16 19 C 0.15 2.03 7.29 71.37 0.52 2.55 16 20 C 0.19 9.21 4.78 86.36 0.41 9.62 16 21 N -0.60 -29.91 2.93 -675.22 -1.98 -31.89 16 22 C -0.26 -14.31 8.21 84.03 0.69 -13.62 16 23 H 0.06 3.46 6.60 -2.91 -0.02 3.44 16 24 C -0.04 -2.27 5.11 84.86 0.43 -1.84 16 25 N -0.93 -56.83 11.54 21.65 0.25 -56.58 16 26 Si 0.96 46.81 29.56 68.60 2.03 48.84 16 27 H -0.29 -14.68 7.11 99.48 0.71 -13.97 16 28 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 29 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 30 H 0.04 1.49 7.68 -2.39 -0.02 1.47 16 31 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.04 1.62 7.42 -2.39 -0.02 1.60 16 33 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.41 9.61 5.03 -92.71 -0.47 9.14 16 38 H 0.18 5.78 8.06 -2.91 -0.02 5.75 16 39 H 0.12 1.31 7.94 -2.39 -0.02 1.30 16 40 H 0.11 1.66 6.98 -2.39 -0.02 1.65 16 41 H 0.16 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.08 0.71 8.10 -2.38 -0.02 0.69 16 43 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.15 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.02 1.47 6.72 -2.39 -0.02 1.45 16 46 H 0.00 0.18 8.14 -2.39 -0.02 0.17 16 47 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -81.20 370.57 0.48 -80.71 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 0.52 Total: 17.96 kcal Atomic # 6 Polarization: 21.25 SS G_CDS: 7.22 Total: 28.47 kcal Atomic # 7 Polarization: -134.69 SS G_CDS: -7.61 Total: -142.30 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -1.68 Total: -33.68 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -81.20 0.48 -80.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071584742.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.064 kcal (2) G-P(sol) polarization free energy of solvation -81.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds