Wall clock time and date at job start Tue Mar 31 2020 19:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.59085 * 2 1 4 4 C 1.53193 * 109.58433 * 120.28086 * 2 1 3 5 5 C 1.53041 * 109.31300 * 174.56357 * 4 2 1 6 6 C 1.53044 * 109.53884 * 298.63377 * 5 4 2 7 7 H 1.08998 * 109.49761 * 181.31591 * 6 5 4 8 8 N 1.46497 * 109.49704 * 301.41588 * 6 5 4 9 9 C 1.34771 * 119.99896 * 204.99787 * 8 6 5 10 10 O 1.21623 * 119.99880 * 0.02562 * 9 8 6 11 11 C 1.47332 * 120.00424 * 179.97438 * 9 8 6 12 12 C 1.36675 * 126.20241 * 180.02562 * 11 9 8 13 13 N 1.34494 * 106.73342 * 179.97438 * 12 11 9 14 14 C 1.36614 * 107.93846 * 0.06239 * 13 12 11 15 15 N 1.29487 * 108.89868 * 359.64344 * 14 13 12 16 16 C 1.51103 * 122.83929 * 179.87970 * 14 13 12 17 17 O 1.43445 * 107.75696 * 345.47483 * 16 14 13 18 18 C 1.43010 * 114.08750 * 49.75315 * 17 16 14 19 19 C 1.46648 * 128.71555 * 180.14038 * 13 12 11 20 20 C 1.53191 * 109.30755 * 61.36274 * 6 5 4 21 21 N 1.46917 * 109.70402 * 239.63746 * 2 1 3 22 22 C 1.36945 * 120.63269 * 6.51524 * 21 2 1 23 23 H 1.07999 * 119.99653 * 330.19743 * 22 21 2 24 24 C 1.38810 * 120.00178 * 150.19385 * 22 21 2 25 25 N 1.31620 * 119.99942 * 344.48884 * 24 22 21 26 26 Si 1.86795 * 119.99872 * 164.48482 * 24 22 21 27 27 H 1.48497 * 109.47152 * 60.00445 * 26 24 22 28 28 H 1.48507 * 109.47028 * 180.02562 * 26 24 22 29 29 H 1.48494 * 109.47373 * 300.00024 * 26 24 22 30 30 H 1.09000 * 109.47021 * 300.00230 * 1 2 3 31 31 H 1.08996 * 109.46860 * 60.00275 * 1 2 3 32 32 H 1.08996 * 109.46920 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.50293 * 294.51312 * 4 2 1 34 34 H 1.08997 * 109.49933 * 54.61186 * 4 2 1 35 35 H 1.09001 * 109.45644 * 58.65504 * 5 4 2 36 36 H 1.09001 * 109.46009 * 178.61472 * 5 4 2 37 37 H 0.96997 * 120.00285 * 24.99505 * 8 6 5 38 38 H 1.08006 * 126.63016 * 359.94869 * 12 11 9 39 39 H 1.08997 * 109.80294 * 105.04241 * 16 14 13 40 40 H 1.09000 * 109.79733 * 225.85527 * 16 14 13 41 41 H 1.09001 * 109.43361 * 49.62253 * 18 17 16 42 42 H 1.08994 * 109.43705 * 169.47828 * 18 17 16 43 43 H 1.08997 * 109.74084 * 283.22112 * 19 13 12 44 44 H 1.09004 * 109.74074 * 43.92468 * 19 13 12 45 45 H 1.09006 * 109.58889 * 65.15964 * 20 6 5 46 46 H 1.09004 * 109.58178 * 185.43292 * 20 6 5 47 47 H 0.97005 * 119.99905 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7278 1.2464 5 6 3.5678 -0.8434 1.1730 6 6 3.9604 -1.6610 -0.0597 7 1 5.0449 -1.7627 -0.0986 8 7 3.3465 -2.9888 0.0184 9 6 3.9059 -4.0290 -0.6308 10 8 4.9205 -3.8654 -1.2811 11 6 3.2889 -5.3646 -0.5518 12 6 3.7464 -6.5022 -1.1557 13 7 2.8924 -7.4869 -0.8242 14 6 1.9220 -6.9511 -0.0256 15 7 2.1642 -5.6900 0.1402 16 6 0.7831 -7.7674 0.5399 17 8 0.7394 -9.0108 -0.1741 18 6 2.0017 -9.6769 -0.2640 19 6 2.9299 -8.9016 -1.2086 20 6 3.4685 -0.9437 -1.3209 21 7 2.0254 -0.6991 -1.1934 22 6 1.1585 -1.1154 -2.1684 23 1 0.1447 -1.3842 -1.9107 24 6 1.5827 -1.1917 -3.4879 25 7 2.6925 -0.5888 -3.8583 26 14 0.5784 -2.1500 -4.7379 27 1 -0.7832 -1.5650 -4.8321 28 1 1.2412 -2.0786 -6.0649 29 1 0.4792 -3.5686 -4.3104 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.7639 -0.1654 2.1372 34 1 1.6049 -1.7245 1.2923 35 1 4.0045 0.1528 1.1022 36 1 3.9380 -1.3391 2.0704 37 1 2.5375 -3.1194 0.5374 38 1 4.6238 -6.5927 -1.7789 39 1 0.9545 -7.9559 1.5997 40 1 -0.1567 -7.2314 0.4074 41 1 2.4548 -9.7306 0.7259 42 1 1.8529 -10.6856 -0.6491 43 1 2.5851 -9.0130 -2.2365 44 1 3.9478 -9.2809 -1.1179 45 1 3.9921 0.0062 -1.4287 46 1 3.6599 -1.5675 -2.1940 47 1 2.9888 -0.6418 -4.7805 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071609304.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:49 Heat of formation + Delta-G solvation = 10.407775 kcal Electronic energy + Delta-G solvation = -30315.299001 eV Core-core repulsion = 26307.015244 eV Total energy + Delta-G solvation = -4008.283757 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.46862 -39.23942 -38.46846 -37.24677 -34.42469 -33.91744 -32.59308 -31.02358 -30.31951 -29.93373 -29.71465 -26.58993 -25.89407 -24.85409 -24.04173 -22.95775 -22.04631 -20.44702 -19.97241 -19.74471 -18.53233 -18.11240 -16.85989 -16.65442 -16.14058 -16.02221 -15.36563 -15.30127 -14.86626 -14.72385 -14.27256 -14.00925 -13.91252 -13.70472 -13.64448 -13.26852 -13.11050 -12.84448 -12.63362 -12.37402 -12.12743 -11.76647 -11.69816 -11.10465 -11.05579 -10.85793 -10.75974 -10.62248 -10.60350 -10.28380 -10.23200 -10.19418 -9.85397 -9.76742 -9.49778 -9.35256 -9.28268 -8.47292 -8.33132 -8.11207 -6.46786 -5.63680 -3.06964 1.73735 2.34399 2.48352 3.24063 3.45645 3.51483 3.53518 3.73222 4.00195 4.05001 4.15397 4.40870 4.52631 4.60621 4.70870 4.91739 4.96613 5.13633 5.26941 5.31901 5.43323 5.48211 5.54590 5.63363 5.66031 5.72943 5.98621 6.14017 6.24424 6.26302 6.34367 6.44815 6.46266 6.52951 6.58167 6.66498 6.74207 6.82267 6.90074 7.04765 7.16662 7.26599 7.52456 7.77697 7.83725 7.95497 8.37872 8.61374 8.98985 9.35522 10.00169 10.56559 11.44486 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011308 B = 0.004206 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.505104 B = 6656.167348 C = 7385.940454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.167 3.833 3 H 0.024 0.976 4 C -0.131 4.131 5 C -0.118 4.118 6 C 0.117 3.883 7 H 0.075 0.925 8 N -0.683 5.683 9 C 0.601 3.399 10 O -0.554 6.554 11 C -0.047 4.047 12 C 0.039 3.961 13 N -0.457 5.457 14 C 0.158 3.842 15 N -0.437 5.437 16 C 0.153 3.847 17 O -0.371 6.371 18 C 0.048 3.952 19 C 0.069 3.931 20 C 0.164 3.836 21 N -0.582 5.582 22 C -0.244 4.244 23 H 0.066 0.934 24 C 0.006 3.994 25 N -0.900 5.900 26 Si 0.895 3.105 27 H -0.284 1.284 28 H -0.292 1.292 29 H -0.287 1.287 30 H 0.036 0.964 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.050 0.950 37 H 0.403 0.597 38 H 0.190 0.810 39 H 0.085 0.915 40 H 0.129 0.871 41 H 0.067 0.933 42 H 0.120 0.880 43 H 0.096 0.904 44 H 0.103 0.897 45 H 0.025 0.975 46 H 0.094 0.906 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.065 -16.650 11.365 20.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.060 3.940 3 H 0.041 0.959 4 C -0.171 4.171 5 C -0.156 4.156 6 C 0.011 3.989 7 H 0.093 0.907 8 N -0.332 5.332 9 C 0.386 3.614 10 O -0.433 6.433 11 C -0.176 4.176 12 C -0.100 4.100 13 N -0.141 5.141 14 C -0.106 4.106 15 N -0.157 5.157 16 C 0.075 3.925 17 O -0.288 6.288 18 C -0.029 4.029 19 C -0.054 4.054 20 C 0.037 3.963 21 N -0.305 5.305 22 C -0.374 4.374 23 H 0.083 0.917 24 C -0.192 4.192 25 N -0.545 5.545 26 Si 0.725 3.275 27 H -0.210 1.210 28 H -0.218 1.218 29 H -0.214 1.214 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.239 0.761 38 H 0.207 0.793 39 H 0.103 0.897 40 H 0.146 0.854 41 H 0.085 0.915 42 H 0.138 0.862 43 H 0.115 0.885 44 H 0.121 0.879 45 H 0.043 0.957 46 H 0.113 0.887 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.229 -16.130 11.068 19.563 hybrid contribution -0.038 -0.992 -1.097 1.480 sum 0.191 -17.122 9.970 19.814 Atomic orbital electron populations 1.21789 0.96183 1.01272 1.00041 1.20443 0.92842 0.93531 0.87179 0.95868 1.22076 0.95169 1.00882 0.98961 1.21680 0.97065 1.00004 0.96815 1.21799 0.96929 0.81869 0.98259 0.90693 1.45621 1.29251 1.07871 1.50471 1.16716 0.83254 0.82170 0.79239 1.90761 1.25429 1.84653 1.42417 1.20901 0.96717 0.95118 1.04889 1.22392 0.97558 0.87133 1.02873 1.45125 1.21222 1.09195 1.38573 1.24121 0.95797 0.90960 0.99693 1.70213 1.14202 1.10307 1.20989 1.21257 0.95062 0.81368 0.94790 1.88162 1.29468 1.34445 1.76738 1.22964 0.84354 0.96557 0.99022 1.22788 1.02857 0.78116 1.01600 1.21155 0.83769 0.96946 0.94452 1.44004 1.02652 1.64760 1.19061 1.19015 0.95010 1.37396 0.85989 0.91669 1.25018 0.97786 0.99519 0.96918 1.69984 1.24033 1.43783 1.16669 0.86488 0.79577 0.80423 0.80979 1.21012 1.21773 1.21361 0.94480 0.92133 0.92897 0.92959 0.92425 0.91178 0.93080 0.76107 0.79328 0.89714 0.85355 0.91502 0.86239 0.88534 0.87896 0.95725 0.88743 0.93775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 7.95 37.16 0.30 -2.30 16 2 C 0.17 3.47 3.49 -67.60 -0.24 3.23 16 3 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.28 5.21 -26.61 -0.14 -2.41 16 5 C -0.12 -2.01 5.59 -26.69 -0.15 -2.15 16 6 C 0.12 2.41 2.81 -67.81 -0.19 2.22 16 7 H 0.08 1.55 7.58 -51.93 -0.39 1.16 16 8 N -0.68 -13.96 4.91 -54.80 -0.27 -14.23 16 9 C 0.60 12.89 7.78 -12.56 -0.10 12.79 16 10 O -0.55 -13.23 16.54 5.26 0.09 -13.14 16 11 C -0.05 -0.88 6.99 -82.89 -0.58 -1.46 16 12 C 0.04 0.59 11.38 -16.95 -0.19 0.40 16 13 N -0.46 -5.75 3.12 -113.31 -0.35 -6.11 16 14 C 0.16 2.20 7.79 -154.60 -1.20 0.99 16 15 N -0.44 -7.57 10.99 -6.94 -0.08 -7.64 16 16 C 0.15 1.51 7.29 36.20 0.26 1.77 16 17 O -0.37 -3.47 10.78 -35.23 -0.38 -3.85 16 18 C 0.05 0.29 6.81 37.39 0.25 0.55 16 19 C 0.07 0.51 7.28 -3.73 -0.03 0.48 16 20 C 0.16 4.09 4.88 -3.71 -0.02 4.07 16 21 N -0.58 -14.56 2.90 -164.77 -0.48 -15.04 16 22 C -0.24 -6.77 8.58 -15.06 -0.13 -6.90 16 23 H 0.07 1.78 6.25 -52.49 -0.33 1.45 16 24 C 0.01 0.18 4.94 -17.43 -0.09 0.10 16 25 N -0.90 -27.31 11.23 55.49 0.62 -26.68 16 26 Si 0.89 23.08 29.58 -169.99 -5.03 18.05 16 27 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 28 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 29 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 1.26 7.66 -51.93 -0.40 0.86 16 32 H 0.05 1.03 7.42 -51.93 -0.39 0.65 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 1.02 6.40 -51.93 -0.33 0.69 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.40 7.93 6.48 -40.82 -0.26 7.67 16 38 H 0.19 2.50 8.06 -52.48 -0.42 2.08 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.13 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 42 H 0.12 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.09 2.78 6.15 -51.93 -0.32 2.46 16 47 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 372.11 15.07 5.61 5.61 Total: -1.00 -35.78 372.11 -9.55 -45.33 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -7.05 Total: 6.32 kcal Atomic # 6 Polarization: 13.62 SS G_CDS: -2.23 Total: 11.39 kcal Atomic # 7 Polarization: -69.14 SS G_CDS: -0.55 Total: -69.70 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.29 Total: -16.99 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.03 Total: 18.05 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.78 -9.55 -45.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071609304.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.738 kcal (2) G-P(sol) polarization free energy of solvation -35.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds