Wall clock time and date at job start Tue Mar 31 2020 19:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.59085 * 2 1 4 4 C 1.53193 * 109.58433 * 120.28086 * 2 1 3 5 5 C 1.53041 * 109.31300 * 174.56357 * 4 2 1 6 6 C 1.53044 * 109.53884 * 298.63377 * 5 4 2 7 7 H 1.08998 * 109.49761 * 181.31591 * 6 5 4 8 8 N 1.46497 * 109.49704 * 301.41588 * 6 5 4 9 9 C 1.34771 * 119.99896 * 204.99787 * 8 6 5 10 10 O 1.21623 * 119.99880 * 0.02562 * 9 8 6 11 11 C 1.47332 * 120.00424 * 179.97438 * 9 8 6 12 12 C 1.36675 * 126.20241 * 180.02562 * 11 9 8 13 13 N 1.34494 * 106.73342 * 179.97438 * 12 11 9 14 14 C 1.36614 * 107.93846 * 0.06239 * 13 12 11 15 15 N 1.29487 * 108.89868 * 359.64344 * 14 13 12 16 16 C 1.51103 * 122.83929 * 179.87970 * 14 13 12 17 17 O 1.43445 * 107.75696 * 345.47483 * 16 14 13 18 18 C 1.43010 * 114.08750 * 49.75315 * 17 16 14 19 19 C 1.46648 * 128.71555 * 180.14038 * 13 12 11 20 20 C 1.53191 * 109.30755 * 61.36274 * 6 5 4 21 21 N 1.46917 * 109.70402 * 239.63746 * 2 1 3 22 22 C 1.36945 * 120.63269 * 6.51524 * 21 2 1 23 23 H 1.07999 * 119.99653 * 330.19743 * 22 21 2 24 24 C 1.38810 * 120.00178 * 150.19385 * 22 21 2 25 25 N 1.31620 * 119.99942 * 344.48884 * 24 22 21 26 26 Si 1.86795 * 119.99872 * 164.48482 * 24 22 21 27 27 H 1.48497 * 109.47152 * 60.00445 * 26 24 22 28 28 H 1.48507 * 109.47028 * 180.02562 * 26 24 22 29 29 H 1.48494 * 109.47373 * 300.00024 * 26 24 22 30 30 H 1.09000 * 109.47021 * 300.00230 * 1 2 3 31 31 H 1.08996 * 109.46860 * 60.00275 * 1 2 3 32 32 H 1.08996 * 109.46920 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.50293 * 294.51312 * 4 2 1 34 34 H 1.08997 * 109.49933 * 54.61186 * 4 2 1 35 35 H 1.09001 * 109.45644 * 58.65504 * 5 4 2 36 36 H 1.09001 * 109.46009 * 178.61472 * 5 4 2 37 37 H 0.96997 * 120.00285 * 24.99505 * 8 6 5 38 38 H 1.08006 * 126.63016 * 359.94869 * 12 11 9 39 39 H 1.08997 * 109.80294 * 105.04241 * 16 14 13 40 40 H 1.09000 * 109.79733 * 225.85527 * 16 14 13 41 41 H 1.09001 * 109.43361 * 49.62253 * 18 17 16 42 42 H 1.08994 * 109.43705 * 169.47828 * 18 17 16 43 43 H 1.08997 * 109.74084 * 283.22112 * 19 13 12 44 44 H 1.09004 * 109.74074 * 43.92468 * 19 13 12 45 45 H 1.09006 * 109.58889 * 65.15964 * 20 6 5 46 46 H 1.09004 * 109.58178 * 185.43292 * 20 6 5 47 47 H 0.97005 * 119.99905 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7278 1.2464 5 6 3.5678 -0.8434 1.1730 6 6 3.9604 -1.6610 -0.0597 7 1 5.0449 -1.7627 -0.0986 8 7 3.3465 -2.9888 0.0184 9 6 3.9059 -4.0290 -0.6308 10 8 4.9205 -3.8654 -1.2811 11 6 3.2889 -5.3646 -0.5518 12 6 3.7464 -6.5022 -1.1557 13 7 2.8924 -7.4869 -0.8242 14 6 1.9220 -6.9511 -0.0256 15 7 2.1642 -5.6900 0.1402 16 6 0.7831 -7.7674 0.5399 17 8 0.7394 -9.0108 -0.1741 18 6 2.0017 -9.6769 -0.2640 19 6 2.9299 -8.9016 -1.2086 20 6 3.4685 -0.9437 -1.3209 21 7 2.0254 -0.6991 -1.1934 22 6 1.1585 -1.1154 -2.1684 23 1 0.1447 -1.3842 -1.9107 24 6 1.5827 -1.1917 -3.4879 25 7 2.6925 -0.5888 -3.8583 26 14 0.5784 -2.1500 -4.7379 27 1 -0.7832 -1.5650 -4.8321 28 1 1.2412 -2.0786 -6.0649 29 1 0.4792 -3.5686 -4.3104 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.7639 -0.1654 2.1372 34 1 1.6049 -1.7245 1.2923 35 1 4.0045 0.1528 1.1022 36 1 3.9380 -1.3391 2.0704 37 1 2.5375 -3.1194 0.5374 38 1 4.6238 -6.5927 -1.7789 39 1 0.9545 -7.9559 1.5997 40 1 -0.1567 -7.2314 0.4074 41 1 2.4548 -9.7306 0.7259 42 1 1.8529 -10.6856 -0.6491 43 1 2.5851 -9.0130 -2.2365 44 1 3.9478 -9.2809 -1.1179 45 1 3.9921 0.0062 -1.4287 46 1 3.6599 -1.5675 -2.1940 47 1 2.9888 -0.6418 -4.7805 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071609304.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:48 Heat of formation + Delta-G solvation = -15.390461 kcal Electronic energy + Delta-G solvation = -30316.417697 eV Core-core repulsion = 26307.015244 eV Total energy + Delta-G solvation = -4009.402452 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.53835 -40.82191 -39.37566 -38.84652 -35.76619 -35.29946 -34.47657 -32.40399 -31.77321 -31.46282 -30.76608 -28.00608 -27.32060 -26.63999 -24.80011 -24.25885 -23.82777 -22.10157 -21.41594 -20.72528 -20.26048 -19.17483 -18.21528 -17.75971 -17.61272 -17.10944 -16.87530 -16.60253 -16.02917 -15.90995 -15.82451 -15.60055 -15.43794 -15.03061 -14.91798 -14.67731 -14.53081 -14.34515 -14.00807 -13.72632 -13.63850 -12.99159 -12.89416 -12.83212 -12.62343 -12.58106 -12.42370 -12.26126 -12.13790 -12.09432 -11.57682 -11.56047 -11.23800 -11.17329 -11.06417 -11.00261 -10.75336 -10.51899 -9.97596 -9.53666 -8.55080 -7.81858 -5.26445 0.50917 1.26348 1.35680 1.40070 1.44084 1.44489 2.35861 2.48579 2.58017 2.67909 2.98666 3.33281 3.38001 3.63495 3.65052 3.90415 3.98544 4.05629 4.11249 4.13215 4.19860 4.29547 4.36400 4.50413 4.52779 4.63916 4.65352 4.70353 4.74875 4.82927 4.88273 4.96853 5.04369 5.10079 5.10899 5.26818 5.31308 5.35089 5.56652 5.62436 5.69186 5.71122 5.74451 5.78366 5.97256 6.45201 6.56253 6.84979 7.19472 7.37520 7.93920 8.44649 9.23274 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011308 B = 0.004206 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.505104 B = 6656.167348 C = 7385.940454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.155 3.845 3 H 0.018 0.982 4 C -0.120 4.120 5 C -0.109 4.109 6 C 0.125 3.875 7 H 0.068 0.932 8 N -0.679 5.679 9 C 0.592 3.408 10 O -0.592 6.592 11 C -0.094 4.094 12 C 0.049 3.951 13 N -0.451 5.451 14 C 0.162 3.838 15 N -0.468 5.468 16 C 0.156 3.844 17 O -0.384 6.384 18 C 0.046 3.954 19 C 0.058 3.942 20 C 0.174 3.826 21 N -0.595 5.595 22 C -0.235 4.235 23 H 0.070 0.930 24 C -0.053 4.053 25 N -0.935 5.935 26 Si 0.949 3.051 27 H -0.268 1.268 28 H -0.298 1.298 29 H -0.293 1.293 30 H 0.077 0.923 31 H 0.035 0.965 32 H 0.046 0.954 33 H 0.092 0.908 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.407 0.593 38 H 0.203 0.797 39 H 0.113 0.887 40 H 0.131 0.869 41 H 0.081 0.919 42 H 0.154 0.846 43 H 0.102 0.898 44 H 0.134 0.866 45 H 0.001 0.999 46 H 0.044 0.956 47 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.367 -19.007 13.846 23.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.050 3.950 3 H 0.036 0.964 4 C -0.159 4.159 5 C -0.147 4.147 6 C 0.019 3.981 7 H 0.086 0.914 8 N -0.327 5.327 9 C 0.380 3.620 10 O -0.474 6.474 11 C -0.222 4.222 12 C -0.092 4.092 13 N -0.133 5.133 14 C -0.103 4.103 15 N -0.189 5.189 16 C 0.078 3.922 17 O -0.301 6.301 18 C -0.031 4.031 19 C -0.062 4.062 20 C 0.047 3.953 21 N -0.318 5.318 22 C -0.365 4.365 23 H 0.087 0.913 24 C -0.247 4.247 25 N -0.582 5.582 26 Si 0.779 3.221 27 H -0.194 1.194 28 H -0.224 1.224 29 H -0.221 1.221 30 H 0.096 0.904 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.110 0.890 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.244 0.756 38 H 0.220 0.780 39 H 0.131 0.869 40 H 0.148 0.852 41 H 0.099 0.901 42 H 0.171 0.829 43 H 0.120 0.880 44 H 0.152 0.848 45 H 0.019 0.981 46 H 0.063 0.937 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -1.249 -18.510 13.592 22.999 hybrid contribution 0.391 -0.349 -1.837 1.910 sum -0.858 -18.859 11.756 22.239 Atomic orbital electron populations 1.21710 0.94785 1.01090 1.00877 1.20759 0.94125 0.93265 0.86850 0.96400 1.21958 0.94843 1.00764 0.98306 1.21659 0.97230 0.99976 0.95841 1.21581 0.96428 0.82238 0.97895 0.91404 1.45575 1.29295 1.07556 1.50297 1.17238 0.82902 0.83523 0.78376 1.90715 1.27162 1.85558 1.44007 1.20666 0.98684 0.94696 1.08140 1.22587 0.97886 0.87032 1.01742 1.45446 1.19844 1.10715 1.37340 1.24947 0.96342 0.90424 0.98624 1.70103 1.14216 1.12421 1.22159 1.21468 0.93488 0.81225 0.96009 1.88155 1.31275 1.33872 1.76795 1.23288 0.82844 0.97269 0.99668 1.23298 1.05364 0.75205 1.02320 1.20824 0.84199 0.95296 0.94967 1.44217 1.02219 1.65468 1.19932 1.19306 0.95295 1.35474 0.86457 0.91284 1.25685 0.99035 1.01196 0.98829 1.70149 1.25864 1.45931 1.16228 0.85606 0.78999 0.78777 0.78740 1.19368 1.22420 1.22052 0.90406 0.94543 0.93502 0.88960 0.92647 0.90325 0.89910 0.75585 0.77998 0.86946 0.85164 0.90083 0.82897 0.88019 0.84839 0.98068 0.93750 0.94796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.66 7.95 71.98 0.57 -4.09 16 2 C 0.16 6.30 3.49 44.98 0.16 6.45 16 3 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 4 C -0.12 -3.81 5.21 30.67 0.16 -3.65 16 5 C -0.11 -3.51 5.59 30.62 0.17 -3.34 16 6 C 0.12 5.23 2.81 45.07 0.13 5.36 16 7 H 0.07 2.93 7.58 -2.39 -0.02 2.91 16 8 N -0.68 -28.33 4.91 -445.52 -2.19 -30.52 16 9 C 0.59 26.47 7.78 86.64 0.67 27.14 16 10 O -0.59 -29.93 16.54 -4.10 -0.07 -30.00 16 11 C -0.09 -3.57 6.99 40.53 0.28 -3.29 16 12 C 0.05 1.48 11.38 83.92 0.95 2.43 16 13 N -0.45 -10.55 3.12 -512.40 -1.60 -12.15 16 14 C 0.16 4.26 7.79 138.04 1.08 5.34 16 15 N -0.47 -16.12 10.99 -175.88 -1.93 -18.06 16 16 C 0.16 2.67 7.29 71.36 0.52 3.19 16 17 O -0.38 -5.94 10.78 -148.98 -1.61 -7.54 16 18 C 0.05 0.37 6.81 72.13 0.49 0.87 16 19 C 0.06 0.68 7.28 86.50 0.63 1.31 16 20 C 0.17 9.15 4.88 86.36 0.42 9.57 16 21 N -0.59 -30.41 2.90 -675.22 -1.96 -32.37 16 22 C -0.23 -13.30 8.58 84.03 0.72 -12.58 16 23 H 0.07 3.81 6.25 -2.91 -0.02 3.79 16 24 C -0.05 -3.15 4.94 84.86 0.42 -2.73 16 25 N -0.93 -59.68 11.23 21.65 0.24 -59.44 16 26 Si 0.95 48.97 29.58 68.60 2.03 51.00 16 27 H -0.27 -13.01 7.11 99.48 0.71 -12.31 16 28 H -0.30 -15.52 7.11 99.48 0.71 -14.81 16 29 H -0.29 -15.26 7.11 99.48 0.71 -14.56 16 30 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.04 1.48 7.66 -2.39 -0.02 1.46 16 32 H 0.05 1.75 7.42 -2.39 -0.02 1.74 16 33 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.05 1.82 6.40 -2.39 -0.02 1.80 16 35 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.41 16.07 6.48 -92.71 -0.60 15.47 16 38 H 0.20 5.35 8.06 -2.91 -0.02 5.32 16 39 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.13 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.08 0.48 8.09 -2.39 -0.02 0.46 16 42 H 0.15 0.26 8.14 -2.39 -0.02 0.24 16 43 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.13 0.77 8.14 -2.38 -0.02 0.75 16 45 H 0.00 0.08 8.14 -2.38 -0.02 0.06 16 46 H 0.04 2.78 6.15 -2.38 -0.01 2.76 16 47 H 0.24 15.31 8.31 -92.70 -0.77 14.54 16 Total: -1.00 -83.77 372.11 0.69 -83.08 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: 0.39 Total: 24.02 kcal Atomic # 6 Polarization: 24.60 SS G_CDS: 7.38 Total: 31.97 kcal Atomic # 7 Polarization: -145.10 SS G_CDS: -7.44 Total: -152.54 kcal Atomic # 8 Polarization: -35.87 SS G_CDS: -1.67 Total: -37.54 kcal Atomic # 14 Polarization: 48.97 SS G_CDS: 2.03 Total: 51.00 kcal Total: -83.77 0.69 -83.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071609304.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.693 kcal (2) G-P(sol) polarization free energy of solvation -83.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds