Wall clock time and date at job start Tue Mar 31 2020 19:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.59022 * 2 1 4 4 C 1.53196 * 109.58921 * 120.42754 * 2 1 3 5 5 C 1.53036 * 109.31466 * 174.42090 * 4 2 1 6 6 C 1.53043 * 109.53839 * 298.63117 * 5 4 2 7 7 H 1.08996 * 109.49826 * 301.41738 * 6 5 4 8 8 N 1.46496 * 109.52385 * 181.33190 * 6 5 4 9 9 C 1.34777 * 119.99627 * 155.14531 * 8 6 5 10 10 O 1.21624 * 120.00478 * 0.02562 * 9 8 6 11 11 C 1.47329 * 119.99818 * 179.97438 * 9 8 6 12 12 C 1.36682 * 126.19723 * 179.97438 * 11 9 8 13 13 N 1.34497 * 106.73212 * 179.97438 * 12 11 9 14 14 C 1.36618 * 107.93842 * 0.08762 * 13 12 11 15 15 N 1.29482 * 108.89865 * 359.62310 * 14 13 12 16 16 C 1.51104 * 122.83760 * 179.86296 * 14 13 12 17 17 O 1.43442 * 107.76043 * 345.50719 * 16 14 13 18 18 C 1.43016 * 114.08538 * 49.73990 * 17 16 14 19 19 C 1.46654 * 128.71779 * 180.16536 * 13 12 11 20 20 C 1.53192 * 109.30834 * 61.36649 * 6 5 4 21 21 N 1.46927 * 108.77872 * 305.36149 * 20 6 5 22 22 C 1.36928 * 120.63300 * 233.58728 * 21 20 6 23 23 H 1.08004 * 120.00160 * 150.86664 * 22 21 20 24 24 C 1.38809 * 120.00407 * 330.86657 * 22 21 20 25 25 N 1.31620 * 119.99787 * 343.81676 * 24 22 21 26 26 Si 1.86793 * 120.00361 * 163.81680 * 24 22 21 27 27 H 1.48504 * 109.47031 * 94.31122 * 26 24 22 28 28 H 1.48496 * 109.47382 * 214.30849 * 26 24 22 29 29 H 1.48497 * 109.47172 * 334.31467 * 26 24 22 30 30 H 1.08992 * 109.47000 * 180.28836 * 1 2 3 31 31 H 1.09005 * 109.46405 * 300.28702 * 1 2 3 32 32 H 1.08996 * 109.47169 * 60.28312 * 1 2 3 33 33 H 1.09006 * 109.49395 * 294.37242 * 4 2 1 34 34 H 1.09004 * 109.49358 * 54.46504 * 4 2 1 35 35 H 1.09001 * 109.45882 * 178.61418 * 5 4 2 36 36 H 1.08997 * 109.46530 * 58.65247 * 5 4 2 37 37 H 0.96996 * 120.00218 * 335.15445 * 8 6 5 38 38 H 1.08001 * 126.63621 * 359.93759 * 12 11 9 39 39 H 1.09005 * 109.79734 * 225.94420 * 16 14 13 40 40 H 1.08992 * 109.85056 * 105.10702 * 16 14 13 41 41 H 1.09001 * 109.43331 * 169.46967 * 18 17 16 42 42 H 1.08993 * 109.43544 * 49.61139 * 18 17 16 43 43 H 1.09000 * 109.73790 * 283.21429 * 19 13 12 44 44 H 1.08997 * 109.73574 * 43.86971 * 19 13 12 45 45 H 1.08998 * 109.58505 * 185.57517 * 20 6 5 46 46 H 1.09005 * 109.58822 * 65.15615 * 20 6 5 47 47 H 0.96998 * 120.00378 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7310 1.2445 5 6 3.5675 -0.8495 1.1691 6 6 3.9569 -1.6658 -0.0656 7 1 3.4983 -2.6529 -0.0085 8 7 5.4141 -1.8060 -0.1201 9 6 5.9669 -2.8467 -0.7743 10 8 5.2560 -3.6691 -1.3197 11 6 7.4324 -2.9874 -0.8297 12 6 8.1242 -3.9874 -1.4539 13 7 9.4308 -3.7333 -1.2607 14 6 9.5321 -2.5880 -0.5228 15 7 8.3419 -2.1430 -0.2737 16 6 10.8586 -1.9952 -0.1081 17 8 11.8680 -2.9928 -0.3163 18 6 11.8312 -3.5989 -1.6112 19 6 10.5926 -4.4973 -1.7268 20 6 3.4650 -0.9454 -1.3249 21 7 2.0225 -0.6982 -1.1954 22 6 1.1537 -1.1100 -2.1703 23 1 0.1365 -1.3667 -1.9139 24 6 1.5803 -1.1977 -3.4883 25 7 2.6906 -0.5977 -3.8619 26 14 0.5788 -2.1672 -4.7317 27 1 -0.3434 -1.2496 -5.4480 28 1 1.4926 -2.8123 -5.7085 29 1 -0.2092 -3.2103 -4.0274 30 1 -0.3633 -1.0276 0.0052 31 1 -0.3632 0.5183 0.8875 32 1 -0.3633 0.5094 -0.8925 33 1 1.7661 -0.1694 2.1366 34 1 1.6029 -1.7269 1.2892 35 1 3.9378 -1.3474 2.0652 36 1 4.0062 0.1459 1.0994 37 1 5.9811 -1.1500 0.3146 38 1 7.7032 -4.8208 -1.9966 39 1 10.8257 -1.7175 0.9455 40 1 11.0771 -1.1164 -0.7147 41 1 12.7294 -4.1992 -1.7563 42 1 11.7880 -2.8218 -2.3743 43 1 10.7222 -5.3846 -1.1072 44 1 10.4464 -4.7921 -2.7660 45 1 3.6518 -1.5691 -2.1991 46 1 3.9904 0.0037 -1.4317 47 1 2.9890 -0.6592 -4.7828 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071609305.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:52 Heat of formation + Delta-G solvation = 7.971798 kcal Electronic energy + Delta-G solvation = -29342.192506 eV Core-core repulsion = 25333.803118 eV Total energy + Delta-G solvation = -4008.389389 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.61300 -39.25726 -38.51975 -37.35578 -34.56391 -34.19519 -32.70751 -31.10847 -30.42046 -30.04844 -29.70524 -26.72197 -25.76600 -24.88793 -24.12107 -22.92291 -22.10298 -20.48835 -19.99195 -19.63019 -19.16194 -18.10867 -16.98193 -16.61198 -16.32463 -16.12236 -15.57337 -15.32880 -14.99241 -14.92989 -14.27680 -14.04867 -13.94048 -13.76993 -13.67830 -13.29149 -13.20332 -13.08405 -12.60730 -12.28510 -12.22181 -11.81779 -11.74470 -11.35821 -11.03110 -10.82262 -10.74266 -10.62805 -10.42261 -10.34109 -10.31526 -10.17236 -9.91728 -9.88925 -9.71737 -9.35498 -9.33711 -8.61577 -8.34320 -8.28340 -6.51598 -5.65381 -3.09063 1.59729 2.21050 2.32332 3.13030 3.46353 3.54071 3.56713 3.58963 3.86446 3.92456 3.93979 4.31788 4.42749 4.60242 4.62169 4.83088 4.87807 5.04502 5.11507 5.17353 5.43598 5.45993 5.48225 5.61544 5.68468 5.81474 5.84656 6.07678 6.22133 6.23595 6.36197 6.37527 6.44688 6.48610 6.54787 6.62675 6.72488 6.75624 6.87236 7.11463 7.13614 7.21858 7.43997 7.64142 7.85580 7.94633 8.18580 8.58996 8.82233 9.33374 9.98274 10.54066 11.42649 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015492 B = 0.002983 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.936953 B = 9385.230337 C =10631.968493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.164 3.836 3 H 0.025 0.975 4 C -0.125 4.125 5 C -0.116 4.116 6 C 0.117 3.883 7 H 0.081 0.919 8 N -0.704 5.704 9 C 0.599 3.401 10 O -0.538 6.538 11 C -0.052 4.052 12 C 0.043 3.957 13 N -0.457 5.457 14 C 0.159 3.841 15 N -0.441 5.441 16 C 0.153 3.847 17 O -0.372 6.372 18 C 0.047 3.953 19 C 0.069 3.931 20 C 0.169 3.831 21 N -0.584 5.584 22 C -0.251 4.251 23 H 0.070 0.930 24 C 0.005 3.995 25 N -0.899 5.899 26 Si 0.899 3.101 27 H -0.289 1.289 28 H -0.290 1.290 29 H -0.278 1.278 30 H 0.053 0.947 31 H 0.037 0.963 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.400 0.600 38 H 0.191 0.809 39 H 0.128 0.872 40 H 0.087 0.913 41 H 0.121 0.879 42 H 0.068 0.932 43 H 0.097 0.903 44 H 0.104 0.896 45 H 0.093 0.907 46 H 0.017 0.983 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.269 -4.671 7.939 21.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.165 4.165 5 C -0.154 4.154 6 C 0.012 3.988 7 H 0.100 0.900 8 N -0.354 5.354 9 C 0.384 3.616 10 O -0.415 6.415 11 C -0.182 4.182 12 C -0.095 4.095 13 N -0.140 5.140 14 C -0.104 4.104 15 N -0.162 5.162 16 C 0.075 3.925 17 O -0.289 6.289 18 C -0.030 4.030 19 C -0.054 4.054 20 C 0.042 3.958 21 N -0.307 5.307 22 C -0.381 4.381 23 H 0.087 0.913 24 C -0.194 4.194 25 N -0.544 5.544 26 Si 0.729 3.271 27 H -0.216 1.216 28 H -0.217 1.217 29 H -0.204 1.204 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.234 0.766 38 H 0.208 0.792 39 H 0.146 0.854 40 H 0.105 0.895 41 H 0.139 0.861 42 H 0.087 0.913 43 H 0.115 0.885 44 H 0.123 0.877 45 H 0.111 0.889 46 H 0.035 0.965 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 18.823 -4.676 7.903 20.944 hybrid contribution -0.138 -0.912 -1.293 1.588 sum 18.685 -5.588 6.610 20.592 Atomic orbital electron populations 1.21802 0.96066 1.01341 1.00159 1.20493 0.93003 0.93585 0.87131 0.95765 1.22040 0.94375 1.01259 0.98834 1.21672 0.97244 0.99744 0.96759 1.21980 0.77771 1.00824 0.98214 0.90045 1.45839 1.08385 1.26564 1.54583 1.16779 0.84300 0.81796 0.78769 1.90833 1.61703 1.42980 1.45963 1.20915 0.94248 0.96110 1.06886 1.22449 0.81836 1.02110 1.03150 1.45153 1.06413 1.21660 1.40802 1.24135 0.97003 0.88896 1.00414 1.70195 0.97753 1.27029 1.21186 1.21263 0.78028 0.89458 1.03798 1.88151 1.52391 1.55386 1.32945 1.22986 0.97319 0.96628 0.86070 1.22810 0.84056 0.96086 1.02404 1.21068 0.83410 0.96900 0.94389 1.44035 1.02678 1.64872 1.19128 1.19130 0.94754 1.38088 0.86096 0.91262 1.25063 0.97812 0.99484 0.96993 1.70023 1.24075 1.43661 1.16598 0.86333 0.79293 0.80068 0.81390 1.21632 1.21670 1.20380 0.92820 0.94387 0.92024 0.92726 0.92090 0.93066 0.92240 0.76614 0.79161 0.85428 0.89538 0.86122 0.91321 0.88490 0.87736 0.88878 0.96500 0.93852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 7.94 37.16 0.30 -2.35 16 2 C 0.16 3.51 3.50 -67.59 -0.24 3.27 16 3 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 4 C -0.13 -2.25 5.37 -26.61 -0.14 -2.39 16 5 C -0.12 -2.04 5.36 -26.69 -0.14 -2.18 16 6 C 0.12 2.47 2.60 -67.81 -0.18 2.29 16 7 H 0.08 1.91 7.58 -51.93 -0.39 1.51 16 8 N -0.70 -13.42 5.08 -54.80 -0.28 -13.70 16 9 C 0.60 12.08 7.78 -12.56 -0.10 11.98 16 10 O -0.54 -12.74 16.55 5.26 0.09 -12.65 16 11 C -0.05 -0.88 6.99 -82.88 -0.58 -1.46 16 12 C 0.04 0.59 11.38 -16.95 -0.19 0.40 16 13 N -0.46 -5.00 3.12 -113.31 -0.35 -5.35 16 14 C 0.16 1.92 7.79 -154.60 -1.20 0.71 16 15 N -0.44 -6.70 10.99 -6.94 -0.08 -6.78 16 16 C 0.15 1.23 7.29 36.20 0.26 1.50 16 17 O -0.37 -2.85 10.78 -35.23 -0.38 -3.23 16 18 C 0.05 0.24 6.81 37.39 0.25 0.49 16 19 C 0.07 0.42 7.28 -3.72 -0.03 0.39 16 20 C 0.17 4.32 4.87 -3.71 -0.02 4.30 16 21 N -0.58 -15.08 2.99 -164.77 -0.49 -15.57 16 22 C -0.25 -7.07 8.59 -15.06 -0.13 -7.19 16 23 H 0.07 1.89 6.22 -52.48 -0.33 1.56 16 24 C 0.01 0.15 4.93 -17.43 -0.09 0.07 16 25 N -0.90 -27.41 11.22 55.49 0.62 -26.79 16 26 Si 0.90 22.85 29.58 -169.99 -5.03 17.82 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 28 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 29 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 30 H 0.05 1.06 7.45 -51.93 -0.39 0.67 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.06 1.28 7.62 -51.93 -0.40 0.89 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.40 6.76 8.31 -40.82 -0.34 6.42 16 38 H 0.19 2.28 8.06 -52.49 -0.42 1.86 16 39 H 0.13 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.12 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 43 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.09 2.78 6.11 -51.93 -0.32 2.46 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 375.55 15.07 5.66 5.66 Total: -1.00 -36.26 375.55 -9.67 -45.93 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -7.21 Total: 4.84 kcal Atomic # 6 Polarization: 12.04 SS G_CDS: -2.22 Total: 9.82 kcal Atomic # 7 Polarization: -67.62 SS G_CDS: -0.58 Total: -68.19 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.29 Total: -15.89 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.03 Total: 17.82 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.26 -9.67 -45.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071609305.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.900 kcal (2) G-P(sol) polarization free energy of solvation -36.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds