Wall clock time and date at job start Tue Mar 31 2020 19:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.59022 * 2 1 4 4 C 1.53196 * 109.58921 * 120.42754 * 2 1 3 5 5 C 1.53036 * 109.31466 * 174.42090 * 4 2 1 6 6 C 1.53043 * 109.53839 * 298.63117 * 5 4 2 7 7 H 1.08996 * 109.49826 * 301.41738 * 6 5 4 8 8 N 1.46496 * 109.52385 * 181.33190 * 6 5 4 9 9 C 1.34777 * 119.99627 * 155.14531 * 8 6 5 10 10 O 1.21624 * 120.00478 * 0.02562 * 9 8 6 11 11 C 1.47329 * 119.99818 * 179.97438 * 9 8 6 12 12 C 1.36682 * 126.19723 * 179.97438 * 11 9 8 13 13 N 1.34497 * 106.73212 * 179.97438 * 12 11 9 14 14 C 1.36618 * 107.93842 * 0.08762 * 13 12 11 15 15 N 1.29482 * 108.89865 * 359.62310 * 14 13 12 16 16 C 1.51104 * 122.83760 * 179.86296 * 14 13 12 17 17 O 1.43442 * 107.76043 * 345.50719 * 16 14 13 18 18 C 1.43016 * 114.08538 * 49.73990 * 17 16 14 19 19 C 1.46654 * 128.71779 * 180.16536 * 13 12 11 20 20 C 1.53192 * 109.30834 * 61.36649 * 6 5 4 21 21 N 1.46927 * 108.77872 * 305.36149 * 20 6 5 22 22 C 1.36928 * 120.63300 * 233.58728 * 21 20 6 23 23 H 1.08004 * 120.00160 * 150.86664 * 22 21 20 24 24 C 1.38809 * 120.00407 * 330.86657 * 22 21 20 25 25 N 1.31620 * 119.99787 * 343.81676 * 24 22 21 26 26 Si 1.86793 * 120.00361 * 163.81680 * 24 22 21 27 27 H 1.48504 * 109.47031 * 94.31122 * 26 24 22 28 28 H 1.48496 * 109.47382 * 214.30849 * 26 24 22 29 29 H 1.48497 * 109.47172 * 334.31467 * 26 24 22 30 30 H 1.08992 * 109.47000 * 180.28836 * 1 2 3 31 31 H 1.09005 * 109.46405 * 300.28702 * 1 2 3 32 32 H 1.08996 * 109.47169 * 60.28312 * 1 2 3 33 33 H 1.09006 * 109.49395 * 294.37242 * 4 2 1 34 34 H 1.09004 * 109.49358 * 54.46504 * 4 2 1 35 35 H 1.09001 * 109.45882 * 178.61418 * 5 4 2 36 36 H 1.08997 * 109.46530 * 58.65247 * 5 4 2 37 37 H 0.96996 * 120.00218 * 335.15445 * 8 6 5 38 38 H 1.08001 * 126.63621 * 359.93759 * 12 11 9 39 39 H 1.09005 * 109.79734 * 225.94420 * 16 14 13 40 40 H 1.08992 * 109.85056 * 105.10702 * 16 14 13 41 41 H 1.09001 * 109.43331 * 169.46967 * 18 17 16 42 42 H 1.08993 * 109.43544 * 49.61139 * 18 17 16 43 43 H 1.09000 * 109.73790 * 283.21429 * 19 13 12 44 44 H 1.08997 * 109.73574 * 43.86971 * 19 13 12 45 45 H 1.08998 * 109.58505 * 185.57517 * 20 6 5 46 46 H 1.09005 * 109.58822 * 65.15615 * 20 6 5 47 47 H 0.96998 * 120.00378 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7310 1.2445 5 6 3.5675 -0.8495 1.1691 6 6 3.9569 -1.6658 -0.0656 7 1 3.4983 -2.6529 -0.0085 8 7 5.4141 -1.8060 -0.1201 9 6 5.9669 -2.8467 -0.7743 10 8 5.2560 -3.6691 -1.3197 11 6 7.4324 -2.9874 -0.8297 12 6 8.1242 -3.9874 -1.4539 13 7 9.4308 -3.7333 -1.2607 14 6 9.5321 -2.5880 -0.5228 15 7 8.3419 -2.1430 -0.2737 16 6 10.8586 -1.9952 -0.1081 17 8 11.8680 -2.9928 -0.3163 18 6 11.8312 -3.5989 -1.6112 19 6 10.5926 -4.4973 -1.7268 20 6 3.4650 -0.9454 -1.3249 21 7 2.0225 -0.6982 -1.1954 22 6 1.1537 -1.1100 -2.1703 23 1 0.1365 -1.3667 -1.9139 24 6 1.5803 -1.1977 -3.4883 25 7 2.6906 -0.5977 -3.8619 26 14 0.5788 -2.1672 -4.7317 27 1 -0.3434 -1.2496 -5.4480 28 1 1.4926 -2.8123 -5.7085 29 1 -0.2092 -3.2103 -4.0274 30 1 -0.3633 -1.0276 0.0052 31 1 -0.3632 0.5183 0.8875 32 1 -0.3633 0.5094 -0.8925 33 1 1.7661 -0.1694 2.1366 34 1 1.6029 -1.7269 1.2892 35 1 3.9378 -1.3474 2.0652 36 1 4.0062 0.1459 1.0994 37 1 5.9811 -1.1500 0.3146 38 1 7.7032 -4.8208 -1.9966 39 1 10.8257 -1.7175 0.9455 40 1 11.0771 -1.1164 -0.7147 41 1 12.7294 -4.1992 -1.7563 42 1 11.7880 -2.8218 -2.3743 43 1 10.7222 -5.3846 -1.1072 44 1 10.4464 -4.7921 -2.7660 45 1 3.6518 -1.5691 -2.1991 46 1 3.9904 0.0037 -1.4317 47 1 2.9890 -0.6592 -4.7828 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071609305.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:51 Heat of formation + Delta-G solvation = -18.627158 kcal Electronic energy + Delta-G solvation = -29343.345924 eV Core-core repulsion = 25333.803118 eV Total energy + Delta-G solvation = -4009.542806 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.57422 -40.77623 -39.39019 -38.94065 -36.00205 -35.32164 -34.63582 -32.43898 -31.80735 -31.48618 -30.79376 -27.99383 -27.33338 -26.55952 -24.78242 -24.29394 -23.78342 -22.09741 -21.36136 -20.84838 -20.60455 -19.09941 -18.33266 -17.70780 -17.65319 -17.28248 -16.88083 -16.70503 -16.12153 -15.94712 -15.76610 -15.49510 -15.42466 -15.04942 -14.99582 -14.90910 -14.48212 -14.40820 -14.11571 -13.75655 -13.47874 -13.08580 -12.88031 -12.76378 -12.69351 -12.53627 -12.29228 -12.26840 -12.12485 -12.00309 -11.68345 -11.59612 -11.45258 -11.19137 -11.14319 -11.01175 -10.77812 -10.53088 -10.11224 -9.59645 -8.62477 -7.84407 -5.30480 0.46230 1.21292 1.40411 1.41528 1.44811 1.53263 2.23206 2.47192 2.51842 2.64646 2.93906 3.31939 3.36192 3.60932 3.67414 3.86356 3.98097 3.99872 4.08821 4.12683 4.25312 4.30460 4.35561 4.39362 4.52832 4.60424 4.64126 4.70266 4.71281 4.81398 4.85441 4.89497 5.00948 5.06511 5.18232 5.25998 5.30340 5.33938 5.47795 5.55524 5.61672 5.69170 5.71125 5.79518 5.94670 6.40686 6.49534 6.77850 7.15321 7.29145 7.90010 8.40593 9.21226 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015492 B = 0.002983 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.936953 B = 9385.230337 C =10631.968493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.152 3.848 3 H 0.020 0.980 4 C -0.116 4.116 5 C -0.108 4.108 6 C 0.132 3.868 7 H 0.054 0.946 8 N -0.697 5.697 9 C 0.593 3.407 10 O -0.586 6.586 11 C -0.095 4.095 12 C 0.053 3.947 13 N -0.451 5.451 14 C 0.165 3.835 15 N -0.468 5.468 16 C 0.155 3.845 17 O -0.380 6.380 18 C 0.044 3.956 19 C 0.059 3.941 20 C 0.184 3.816 21 N -0.602 5.602 22 C -0.251 4.251 23 H 0.077 0.923 24 C -0.056 4.056 25 N -0.935 5.935 26 Si 0.959 3.041 27 H -0.280 1.280 28 H -0.300 1.300 29 H -0.269 1.269 30 H 0.047 0.953 31 H 0.079 0.921 32 H 0.038 0.962 33 H 0.097 0.903 34 H 0.054 0.946 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.411 0.589 38 H 0.203 0.797 39 H 0.140 0.860 40 H 0.105 0.895 41 H 0.155 0.845 42 H 0.074 0.926 43 H 0.112 0.888 44 H 0.127 0.873 45 H 0.042 0.958 46 H -0.007 1.007 47 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.843 -4.987 9.772 23.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.047 3.953 3 H 0.038 0.962 4 C -0.155 4.155 5 C -0.146 4.146 6 C 0.026 3.974 7 H 0.073 0.927 8 N -0.347 5.347 9 C 0.381 3.619 10 O -0.467 6.467 11 C -0.223 4.223 12 C -0.088 4.088 13 N -0.133 5.133 14 C -0.100 4.100 15 N -0.189 5.189 16 C 0.077 3.923 17 O -0.297 6.297 18 C -0.032 4.032 19 C -0.061 4.061 20 C 0.056 3.944 21 N -0.327 5.327 22 C -0.381 4.381 23 H 0.094 0.906 24 C -0.251 4.251 25 N -0.582 5.582 26 Si 0.788 3.212 27 H -0.206 1.206 28 H -0.227 1.227 29 H -0.194 1.194 30 H 0.066 0.934 31 H 0.098 0.902 32 H 0.057 0.943 33 H 0.116 0.884 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.088 0.912 37 H 0.248 0.752 38 H 0.219 0.781 39 H 0.158 0.842 40 H 0.123 0.877 41 H 0.172 0.828 42 H 0.092 0.908 43 H 0.130 0.870 44 H 0.145 0.855 45 H 0.060 0.940 46 H 0.011 0.989 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 20.421 -4.975 9.783 23.184 hybrid contribution -0.505 -0.816 -1.850 2.084 sum 19.917 -5.791 7.933 22.207 Atomic orbital electron populations 1.21727 0.94490 1.01239 1.01115 1.20828 0.94478 0.93320 0.86698 0.96186 1.21947 0.94127 1.01017 0.98424 1.21645 0.97383 0.99800 0.95734 1.21573 0.78745 0.99271 0.97857 0.92741 1.45722 1.07707 1.26780 1.54476 1.17319 0.85888 0.81110 0.77603 1.90785 1.63313 1.44634 1.47931 1.20537 0.92782 0.98633 1.10315 1.22605 0.83041 1.01323 1.01848 1.45468 1.06547 1.21551 1.39695 1.24952 0.97486 0.88671 0.98893 1.70088 0.98691 1.27686 1.22400 1.21494 0.76029 0.89863 1.04893 1.88153 1.51706 1.55374 1.34455 1.23275 0.97947 0.96939 0.85057 1.23301 0.82464 0.96344 1.03992 1.20706 0.83841 0.94995 0.94815 1.44331 1.02396 1.65746 1.20187 1.19503 0.95261 1.36678 0.86668 0.90558 1.25840 0.99145 1.01052 0.99039 1.70196 1.26004 1.45671 1.16329 0.85374 0.77871 0.78939 0.79052 1.20604 1.22694 1.19366 0.93414 0.90191 0.94262 0.88450 0.92684 0.89903 0.91197 0.75238 0.78060 0.84211 0.87743 0.82756 0.90814 0.87005 0.85485 0.93981 0.98908 0.94728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.78 7.94 71.98 0.57 -4.21 16 2 C 0.15 6.36 3.50 44.97 0.16 6.52 16 3 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 4 C -0.12 -3.87 5.37 30.67 0.16 -3.71 16 5 C -0.11 -3.60 5.36 30.62 0.16 -3.44 16 6 C 0.13 5.71 2.60 45.07 0.12 5.83 16 7 H 0.05 2.67 7.58 -2.39 -0.02 2.65 16 8 N -0.70 -27.66 5.08 -445.52 -2.26 -29.93 16 9 C 0.59 25.32 7.78 86.64 0.67 25.99 16 10 O -0.59 -29.71 16.55 -4.11 -0.07 -29.78 16 11 C -0.09 -3.29 6.99 40.53 0.28 -3.01 16 12 C 0.05 1.47 11.38 83.92 0.95 2.42 16 13 N -0.45 -9.20 3.12 -512.39 -1.60 -10.79 16 14 C 0.17 3.77 7.79 138.04 1.08 4.85 16 15 N -0.47 -14.23 10.99 -175.88 -1.93 -16.17 16 16 C 0.16 2.14 7.29 71.36 0.52 2.66 16 17 O -0.38 -4.65 10.78 -148.98 -1.61 -6.25 16 18 C 0.04 0.29 6.81 72.13 0.49 0.78 16 19 C 0.06 0.54 7.28 86.50 0.63 1.17 16 20 C 0.18 9.89 4.87 86.36 0.42 10.31 16 21 N -0.60 -32.04 2.99 -675.21 -2.02 -34.06 16 22 C -0.25 -14.52 8.59 84.03 0.72 -13.80 16 23 H 0.08 4.22 6.22 -2.91 -0.02 4.21 16 24 C -0.06 -3.37 4.93 84.86 0.42 -2.96 16 25 N -0.94 -60.14 11.22 21.65 0.24 -59.90 16 26 Si 0.96 48.65 29.58 68.60 2.03 50.67 16 27 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16 28 H -0.30 -15.54 7.11 99.48 0.71 -14.83 16 29 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 30 H 0.05 1.81 7.45 -2.39 -0.02 1.80 16 31 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 32 H 0.04 1.61 7.62 -2.39 -0.02 1.59 16 33 H 0.10 2.50 8.14 -2.38 -0.02 2.48 16 34 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 35 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.41 14.21 8.31 -92.71 -0.77 13.44 16 38 H 0.20 4.90 8.06 -2.91 -0.02 4.88 16 39 H 0.14 1.58 8.14 -2.38 -0.02 1.56 16 40 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.15 -0.01 8.14 -2.39 -0.02 -0.03 16 42 H 0.07 0.44 8.09 -2.39 -0.02 0.42 16 43 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.04 2.69 6.11 -2.39 -0.01 2.67 16 46 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 47 H 0.24 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -85.44 375.55 0.37 -85.07 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: 0.22 Total: 21.73 kcal Atomic # 6 Polarization: 22.04 SS G_CDS: 7.36 Total: 29.40 kcal Atomic # 7 Polarization: -143.28 SS G_CDS: -7.57 Total: -150.85 kcal Atomic # 8 Polarization: -34.36 SS G_CDS: -1.67 Total: -36.03 kcal Atomic # 14 Polarization: 48.65 SS G_CDS: 2.03 Total: 50.67 kcal Total: -85.44 0.37 -85.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071609305.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.442 kcal (2) G-P(sol) polarization free energy of solvation -85.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds