Wall clock time and date at job start Tue Mar 31 2020 19:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.69945 * 2 1 4 4 C 1.53191 * 109.58872 * 239.63986 * 2 1 3 5 5 C 1.53043 * 109.31113 * 185.58029 * 4 2 1 6 6 C 1.53035 * 109.52636 * 61.37137 * 5 4 2 7 7 H 1.08991 * 109.49887 * 58.57856 * 6 5 4 8 8 N 1.46504 * 109.49506 * 178.67903 * 6 5 4 9 9 C 1.34774 * 119.99854 * 205.00324 * 8 6 5 10 10 O 1.21628 * 120.00147 * 359.97438 * 9 8 6 11 11 C 1.47324 * 120.00065 * 179.97438 * 9 8 6 12 12 C 1.36684 * 126.19545 * 179.71183 * 11 9 8 13 13 N 1.34504 * 106.72980 * 179.80329 * 12 11 9 14 14 C 1.36619 * 107.93373 * 0.50017 * 13 12 11 15 15 N 1.29479 * 108.90258 * 359.63391 * 14 13 12 16 16 C 1.51100 * 122.83617 * 179.59421 * 14 13 12 17 17 O 1.43439 * 107.76384 * 345.48082 * 16 14 13 18 18 C 1.43021 * 114.08676 * 49.74739 * 17 16 14 19 19 C 1.46652 * 128.72017 * 180.27185 * 13 12 11 20 20 C 1.53194 * 109.31292 * 298.60959 * 6 5 4 21 21 N 1.46922 * 109.58343 * 120.34841 * 2 1 3 22 22 C 1.36938 * 120.63458 * 353.37721 * 21 2 1 23 23 H 1.08002 * 119.99890 * 29.05483 * 22 21 2 24 24 C 1.38809 * 120.00242 * 209.05491 * 22 21 2 25 25 N 1.31618 * 120.00290 * 15.05364 * 24 22 21 26 26 Si 1.86802 * 120.00128 * 195.04849 * 24 22 21 27 27 H 1.48501 * 109.46973 * 89.99972 * 26 24 22 28 28 H 1.48494 * 109.47222 * 210.00108 * 26 24 22 29 29 H 1.48497 * 109.47200 * 330.00246 * 26 24 22 30 30 H 1.09001 * 109.47514 * 180.35742 * 1 2 3 31 31 H 1.09002 * 109.47676 * 300.36264 * 1 2 3 32 32 H 1.09003 * 109.46778 * 60.35704 * 1 2 3 33 33 H 1.08997 * 109.49343 * 65.63125 * 4 2 1 34 34 H 1.08997 * 109.52139 * 305.54403 * 4 2 1 35 35 H 1.09001 * 109.45895 * 181.38703 * 5 4 2 36 36 H 1.09001 * 109.45747 * 301.36007 * 5 4 2 37 37 H 0.96996 * 120.00224 * 24.99152 * 8 6 5 38 38 H 1.07994 * 126.63770 * 359.96090 * 12 11 9 39 39 H 1.08997 * 109.80291 * 105.04553 * 16 14 13 40 40 H 1.09004 * 109.80489 * 225.85616 * 16 14 13 41 41 H 1.09007 * 109.42671 * 49.62798 * 18 17 16 42 42 H 1.08997 * 109.43612 * 169.47936 * 18 17 16 43 43 H 1.08993 * 109.73781 * 44.27006 * 19 13 12 44 44 H 1.08998 * 109.73422 * 283.56677 * 19 13 12 45 45 H 1.08994 * 109.60259 * 294.87384 * 20 6 5 46 46 H 1.08999 * 109.70281 * 174.50657 * 20 6 5 47 47 H 0.96998 * 120.00359 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7295 -1.2453 5 6 3.5676 -0.8481 -1.1699 6 6 3.9565 -1.6659 0.0637 7 1 3.4978 -2.6528 0.0054 8 7 5.4139 -1.8057 0.1180 9 6 5.9670 -2.8486 0.7682 10 8 5.2563 -3.6735 1.3103 11 6 7.4325 -2.9896 0.8223 12 6 8.1247 -3.9886 1.4477 13 7 9.4311 -3.7378 1.2485 14 6 9.5320 -2.5884 0.5169 15 7 8.3416 -2.1462 0.2641 16 6 10.8584 -1.9911 0.1082 17 8 11.8819 -2.6214 0.8909 18 6 11.8149 -4.0501 0.8977 19 6 10.5930 -4.5070 1.7057 20 6 3.4650 -0.9467 1.3239 21 7 2.0224 -0.6994 1.1945 22 6 1.1536 -1.1125 2.1691 23 1 0.1360 -1.3674 1.9125 24 6 1.5809 -1.2037 3.4866 25 7 2.7035 -0.6245 3.8561 26 14 0.5624 -2.1483 4.7356 27 1 0.9975 -3.5680 4.7570 28 1 0.7526 -1.5519 6.0821 29 1 -0.8726 -2.0761 4.3604 30 1 -0.3634 -1.0276 0.0064 31 1 -0.3634 0.5194 0.8867 32 1 -0.3633 0.5083 -0.8932 33 1 1.7661 -0.1669 -2.1367 34 1 1.6031 -1.7254 -1.2917 35 1 3.9379 -1.3450 -2.0666 36 1 4.0061 0.1473 -1.0989 37 1 5.9807 -1.1478 -0.3141 38 1 7.7041 -4.8200 1.9938 39 1 11.0364 -2.1771 -0.9510 40 1 10.8547 -0.9179 0.2990 41 1 11.7293 -4.4139 -0.1263 42 1 12.7206 -4.4535 1.3505 43 1 10.4188 -5.5701 1.5403 44 1 10.7628 -4.3217 2.7663 45 1 3.9902 0.0022 1.4318 46 1 3.6519 -1.5694 2.1988 47 1 3.0019 -0.6879 4.7768 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071609306.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:55 Heat of formation + Delta-G solvation = 8.220824 kcal Electronic energy + Delta-G solvation = -29340.760511 eV Core-core repulsion = 25332.381921 eV Total energy + Delta-G solvation = -4008.378590 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.61105 -39.25292 -38.51824 -37.35295 -34.56261 -34.19069 -32.70730 -31.10654 -30.41927 -30.04792 -29.69209 -26.71990 -25.76323 -24.88827 -24.12224 -22.91857 -22.09485 -20.48583 -19.98987 -19.62951 -19.15935 -18.10799 -16.97281 -16.61014 -16.32021 -16.14672 -15.52177 -15.38703 -14.99224 -14.87487 -14.32448 -14.01105 -13.99118 -13.68138 -13.67155 -13.34342 -13.26361 -12.98609 -12.62361 -12.26619 -12.22460 -11.82826 -11.74196 -11.35281 -11.03114 -10.79254 -10.74120 -10.65378 -10.41582 -10.34007 -10.30566 -10.16510 -9.91789 -9.87168 -9.71093 -9.34774 -9.33969 -8.61357 -8.34113 -8.27381 -6.51347 -5.64054 -3.08881 1.59908 2.21674 2.32007 3.13385 3.48323 3.54776 3.55541 3.58940 3.86415 3.92780 3.94272 4.31200 4.42349 4.59825 4.62110 4.81615 4.87496 5.03811 5.12609 5.17832 5.44131 5.46373 5.48697 5.62000 5.68831 5.81666 5.84832 6.07877 6.22531 6.23708 6.36413 6.37865 6.44966 6.48623 6.54853 6.63164 6.72678 6.75906 6.87611 7.11937 7.13830 7.22108 7.45109 7.64447 7.87985 7.95437 8.19091 8.60052 8.82800 9.34288 9.98833 10.54356 11.43645 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015566 B = 0.002970 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.363110 B = 9424.572672 C =10630.285646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.125 4.125 5 C -0.116 4.116 6 C 0.117 3.883 7 H 0.081 0.919 8 N -0.704 5.704 9 C 0.599 3.401 10 O -0.538 6.538 11 C -0.052 4.052 12 C 0.043 3.957 13 N -0.456 5.456 14 C 0.159 3.841 15 N -0.441 5.441 16 C 0.153 3.847 17 O -0.371 6.371 18 C 0.048 3.952 19 C 0.068 3.932 20 C 0.168 3.832 21 N -0.584 5.584 22 C -0.251 4.251 23 H 0.070 0.930 24 C 0.005 3.995 25 N -0.900 5.900 26 Si 0.900 3.100 27 H -0.287 1.287 28 H -0.293 1.293 29 H -0.279 1.279 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.037 0.963 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.050 0.950 36 H 0.059 0.941 37 H 0.400 0.600 38 H 0.191 0.809 39 H 0.086 0.914 40 H 0.129 0.871 41 H 0.067 0.933 42 H 0.121 0.879 43 H 0.104 0.896 44 H 0.098 0.902 45 H 0.017 0.983 46 H 0.095 0.905 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.165 -5.851 -9.903 22.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.165 4.165 5 C -0.154 4.154 6 C 0.012 3.988 7 H 0.099 0.901 8 N -0.354 5.354 9 C 0.383 3.617 10 O -0.415 6.415 11 C -0.182 4.182 12 C -0.095 4.095 13 N -0.140 5.140 14 C -0.105 4.105 15 N -0.162 5.162 16 C 0.075 3.925 17 O -0.288 6.288 18 C -0.029 4.029 19 C -0.054 4.054 20 C 0.041 3.959 21 N -0.307 5.307 22 C -0.381 4.381 23 H 0.088 0.912 24 C -0.194 4.194 25 N -0.544 5.544 26 Si 0.730 3.270 27 H -0.214 1.214 28 H -0.219 1.219 29 H -0.205 1.205 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.234 0.766 38 H 0.208 0.792 39 H 0.103 0.897 40 H 0.147 0.853 41 H 0.086 0.914 42 H 0.139 0.861 43 H 0.122 0.878 44 H 0.116 0.884 45 H 0.035 0.965 46 H 0.113 0.887 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 18.717 -5.695 -9.629 21.806 hybrid contribution -0.150 -1.110 0.981 1.489 sum 18.567 -6.805 -8.648 21.583 Atomic orbital electron populations 1.21799 0.96053 1.01393 1.00095 1.20489 0.92987 0.93591 0.87125 0.95761 1.22043 0.94387 1.01251 0.98850 1.21674 0.97238 0.99747 0.96762 1.21981 0.77764 1.00803 0.98230 0.90059 1.45840 1.08385 1.26334 1.54805 1.16779 0.84293 0.81838 0.78744 1.90836 1.61713 1.42933 1.45987 1.20915 0.94258 0.96253 1.06729 1.22451 0.81831 1.02302 1.02959 1.45153 1.06412 1.21318 1.41143 1.24135 0.96988 0.88661 1.00686 1.70192 0.97767 1.26826 1.21370 1.21262 0.77785 0.98235 0.95238 1.88164 1.50365 1.18548 1.71718 1.22982 0.97602 0.82016 1.00340 1.22812 0.84120 0.97103 1.01361 1.21097 0.83361 0.96983 0.94444 1.44037 1.02696 1.64768 1.19231 1.19153 0.94698 1.38083 0.86143 0.91207 1.25074 0.97734 0.99544 0.97019 1.70005 1.23322 1.44355 1.16747 0.86325 0.79710 0.80076 0.80867 1.21385 1.21903 1.20484 0.92795 0.92063 0.94392 0.92744 0.92111 0.93094 0.92239 0.76622 0.79159 0.89657 0.85350 0.91442 0.86130 0.87793 0.88404 0.96522 0.88659 0.93806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 7.94 37.16 0.30 -2.34 16 2 C 0.16 3.52 3.50 -67.60 -0.24 3.28 16 3 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 4 C -0.13 -2.25 5.37 -26.61 -0.14 -2.40 16 5 C -0.12 -2.04 5.35 -26.69 -0.14 -2.18 16 6 C 0.12 2.48 2.60 -67.81 -0.18 2.30 16 7 H 0.08 1.91 7.58 -51.93 -0.39 1.51 16 8 N -0.70 -13.45 5.08 -54.80 -0.28 -13.73 16 9 C 0.60 12.10 7.78 -12.57 -0.10 12.00 16 10 O -0.54 -12.78 16.54 5.25 0.09 -12.69 16 11 C -0.05 -0.88 6.99 -82.89 -0.58 -1.46 16 12 C 0.04 0.59 11.38 -16.94 -0.19 0.40 16 13 N -0.46 -5.01 3.12 -113.31 -0.35 -5.36 16 14 C 0.16 1.92 7.79 -154.60 -1.20 0.71 16 15 N -0.44 -6.71 10.99 -6.95 -0.08 -6.78 16 16 C 0.15 1.24 7.29 36.20 0.26 1.50 16 17 O -0.37 -2.90 10.78 -35.23 -0.38 -3.28 16 18 C 0.05 0.23 6.81 37.39 0.25 0.49 16 19 C 0.07 0.42 7.28 -3.72 -0.03 0.39 16 20 C 0.17 4.30 4.87 -3.71 -0.02 4.29 16 21 N -0.58 -15.12 2.99 -164.78 -0.49 -15.61 16 22 C -0.25 -7.08 8.61 -15.06 -0.13 -7.21 16 23 H 0.07 1.91 6.20 -52.49 -0.33 1.58 16 24 C 0.01 0.15 4.96 -17.43 -0.09 0.06 16 25 N -0.90 -27.53 11.14 55.49 0.62 -26.92 16 26 Si 0.90 22.92 29.58 -169.99 -5.03 17.89 16 27 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 28 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 29 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 30 H 0.05 1.06 7.40 -51.93 -0.38 0.68 16 31 H 0.06 1.28 7.66 -51.93 -0.40 0.88 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.40 6.77 8.31 -40.82 -0.34 6.43 16 38 H 0.19 2.29 8.06 -52.49 -0.42 1.87 16 39 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.13 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.07 0.28 8.09 -51.92 -0.42 -0.14 16 42 H 0.12 0.26 8.14 -51.93 -0.42 -0.17 16 43 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.10 2.86 6.06 -51.93 -0.31 2.55 16 47 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 375.44 15.07 5.66 5.66 Total: -1.00 -36.41 375.44 -9.67 -46.09 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -7.21 Total: 4.92 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: -2.22 Total: 9.83 kcal Atomic # 7 Polarization: -67.82 SS G_CDS: -0.58 Total: -68.40 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.29 Total: -15.98 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.03 Total: 17.89 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.41 -9.67 -46.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071609306.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.306 kcal (2) G-P(sol) polarization free energy of solvation -36.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds