Wall clock time and date at job start Tue Mar 31 2020 19:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.69945 * 2 1 4 4 C 1.53191 * 109.58872 * 239.63986 * 2 1 3 5 5 C 1.53043 * 109.31113 * 185.58029 * 4 2 1 6 6 C 1.53035 * 109.52636 * 61.37137 * 5 4 2 7 7 H 1.08991 * 109.49887 * 58.57856 * 6 5 4 8 8 N 1.46504 * 109.49506 * 178.67903 * 6 5 4 9 9 C 1.34774 * 119.99854 * 205.00324 * 8 6 5 10 10 O 1.21628 * 120.00147 * 359.97438 * 9 8 6 11 11 C 1.47324 * 120.00065 * 179.97438 * 9 8 6 12 12 C 1.36684 * 126.19545 * 179.71183 * 11 9 8 13 13 N 1.34504 * 106.72980 * 179.80329 * 12 11 9 14 14 C 1.36619 * 107.93373 * 0.50017 * 13 12 11 15 15 N 1.29479 * 108.90258 * 359.63391 * 14 13 12 16 16 C 1.51100 * 122.83617 * 179.59421 * 14 13 12 17 17 O 1.43439 * 107.76384 * 345.48082 * 16 14 13 18 18 C 1.43021 * 114.08676 * 49.74739 * 17 16 14 19 19 C 1.46652 * 128.72017 * 180.27185 * 13 12 11 20 20 C 1.53194 * 109.31292 * 298.60959 * 6 5 4 21 21 N 1.46922 * 109.58343 * 120.34841 * 2 1 3 22 22 C 1.36938 * 120.63458 * 353.37721 * 21 2 1 23 23 H 1.08002 * 119.99890 * 29.05483 * 22 21 2 24 24 C 1.38809 * 120.00242 * 209.05491 * 22 21 2 25 25 N 1.31618 * 120.00290 * 15.05364 * 24 22 21 26 26 Si 1.86802 * 120.00128 * 195.04849 * 24 22 21 27 27 H 1.48501 * 109.46973 * 89.99972 * 26 24 22 28 28 H 1.48494 * 109.47222 * 210.00108 * 26 24 22 29 29 H 1.48497 * 109.47200 * 330.00246 * 26 24 22 30 30 H 1.09001 * 109.47514 * 180.35742 * 1 2 3 31 31 H 1.09002 * 109.47676 * 300.36264 * 1 2 3 32 32 H 1.09003 * 109.46778 * 60.35704 * 1 2 3 33 33 H 1.08997 * 109.49343 * 65.63125 * 4 2 1 34 34 H 1.08997 * 109.52139 * 305.54403 * 4 2 1 35 35 H 1.09001 * 109.45895 * 181.38703 * 5 4 2 36 36 H 1.09001 * 109.45747 * 301.36007 * 5 4 2 37 37 H 0.96996 * 120.00224 * 24.99152 * 8 6 5 38 38 H 1.07994 * 126.63770 * 359.96090 * 12 11 9 39 39 H 1.08997 * 109.80291 * 105.04553 * 16 14 13 40 40 H 1.09004 * 109.80489 * 225.85616 * 16 14 13 41 41 H 1.09007 * 109.42671 * 49.62798 * 18 17 16 42 42 H 1.08997 * 109.43612 * 169.47936 * 18 17 16 43 43 H 1.08993 * 109.73781 * 44.27006 * 19 13 12 44 44 H 1.08998 * 109.73422 * 283.56677 * 19 13 12 45 45 H 1.08994 * 109.60259 * 294.87384 * 20 6 5 46 46 H 1.08999 * 109.70281 * 174.50657 * 20 6 5 47 47 H 0.96998 * 120.00359 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7295 -1.2453 5 6 3.5676 -0.8481 -1.1699 6 6 3.9565 -1.6659 0.0637 7 1 3.4978 -2.6528 0.0054 8 7 5.4139 -1.8057 0.1180 9 6 5.9670 -2.8486 0.7682 10 8 5.2563 -3.6735 1.3103 11 6 7.4325 -2.9896 0.8223 12 6 8.1247 -3.9886 1.4477 13 7 9.4311 -3.7378 1.2485 14 6 9.5320 -2.5884 0.5169 15 7 8.3416 -2.1462 0.2641 16 6 10.8584 -1.9911 0.1082 17 8 11.8819 -2.6214 0.8909 18 6 11.8149 -4.0501 0.8977 19 6 10.5930 -4.5070 1.7057 20 6 3.4650 -0.9467 1.3239 21 7 2.0224 -0.6994 1.1945 22 6 1.1536 -1.1125 2.1691 23 1 0.1360 -1.3674 1.9125 24 6 1.5809 -1.2037 3.4866 25 7 2.7035 -0.6245 3.8561 26 14 0.5624 -2.1483 4.7356 27 1 0.9975 -3.5680 4.7570 28 1 0.7526 -1.5519 6.0821 29 1 -0.8726 -2.0761 4.3604 30 1 -0.3634 -1.0276 0.0064 31 1 -0.3634 0.5194 0.8867 32 1 -0.3633 0.5083 -0.8932 33 1 1.7661 -0.1669 -2.1367 34 1 1.6031 -1.7254 -1.2917 35 1 3.9379 -1.3450 -2.0666 36 1 4.0061 0.1473 -1.0989 37 1 5.9807 -1.1478 -0.3141 38 1 7.7041 -4.8200 1.9938 39 1 11.0364 -2.1771 -0.9510 40 1 10.8547 -0.9179 0.2990 41 1 11.7293 -4.4139 -0.1263 42 1 12.7206 -4.4535 1.3505 43 1 10.4188 -5.5701 1.5403 44 1 10.7628 -4.3217 2.7663 45 1 3.9902 0.0022 1.4318 46 1 3.6519 -1.5694 2.1988 47 1 3.0019 -0.6879 4.7768 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071609306.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:54 Heat of formation + Delta-G solvation = -18.607809 kcal Electronic energy + Delta-G solvation = -29341.923888 eV Core-core repulsion = 25332.381921 eV Total energy + Delta-G solvation = -4009.541967 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.57312 -40.77489 -39.38976 -38.94058 -36.00195 -35.32109 -34.63973 -32.43868 -31.80098 -31.48406 -30.78985 -27.99314 -27.33645 -26.56104 -24.77757 -24.28990 -23.78113 -22.09825 -21.36154 -20.84916 -20.60197 -19.09877 -18.32871 -17.70928 -17.65768 -17.26493 -16.90096 -16.73305 -16.05617 -15.89964 -15.80831 -15.57362 -15.39150 -15.05819 -14.95378 -14.88271 -14.57470 -14.33276 -14.11786 -13.74395 -13.50473 -13.08140 -12.86918 -12.73617 -12.72251 -12.56818 -12.27989 -12.26450 -12.10218 -11.98377 -11.67687 -11.59549 -11.45174 -11.17928 -11.15189 -11.01029 -10.77892 -10.54092 -10.11136 -9.59605 -8.62772 -7.83743 -5.30965 0.46120 1.21575 1.40445 1.41436 1.45982 1.51916 2.23316 2.46987 2.51744 2.66225 2.94040 3.32233 3.36688 3.61243 3.67496 3.86482 3.98579 4.00068 4.08873 4.12633 4.25481 4.30489 4.35641 4.39383 4.53305 4.60651 4.64602 4.70757 4.71292 4.81601 4.85527 4.89529 5.00944 5.06568 5.18346 5.26103 5.30422 5.34213 5.48405 5.55573 5.61951 5.69922 5.71276 5.80662 5.95341 6.40788 6.49654 6.77940 7.15351 7.29263 7.89988 8.40265 9.21467 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015566 B = 0.002970 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.363110 B = 9424.572672 C =10630.285646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.152 3.848 3 H 0.020 0.980 4 C -0.116 4.116 5 C -0.108 4.108 6 C 0.132 3.868 7 H 0.054 0.946 8 N -0.697 5.697 9 C 0.593 3.407 10 O -0.586 6.586 11 C -0.095 4.095 12 C 0.053 3.947 13 N -0.450 5.450 14 C 0.165 3.835 15 N -0.468 5.468 16 C 0.156 3.844 17 O -0.383 6.383 18 C 0.045 3.955 19 C 0.058 3.942 20 C 0.182 3.818 21 N -0.603 5.603 22 C -0.250 4.250 23 H 0.078 0.922 24 C -0.057 4.057 25 N -0.936 5.936 26 Si 0.960 3.040 27 H -0.295 1.295 28 H -0.295 1.295 29 H -0.259 1.259 30 H 0.047 0.953 31 H 0.038 0.962 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.055 0.945 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.411 0.589 38 H 0.202 0.798 39 H 0.111 0.889 40 H 0.135 0.865 41 H 0.079 0.921 42 H 0.153 0.847 43 H 0.132 0.868 44 H 0.105 0.895 45 H -0.008 1.008 46 H 0.043 0.957 47 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.676 -6.353 -12.149 24.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.047 3.953 3 H 0.038 0.962 4 C -0.155 4.155 5 C -0.145 4.145 6 C 0.026 3.974 7 H 0.073 0.927 8 N -0.347 5.347 9 C 0.381 3.619 10 O -0.467 6.467 11 C -0.223 4.223 12 C -0.088 4.088 13 N -0.132 5.132 14 C -0.100 4.100 15 N -0.189 5.189 16 C 0.077 3.923 17 O -0.300 6.300 18 C -0.031 4.031 19 C -0.062 4.062 20 C 0.055 3.945 21 N -0.327 5.327 22 C -0.380 4.380 23 H 0.096 0.904 24 C -0.252 4.252 25 N -0.583 5.583 26 Si 0.789 3.211 27 H -0.223 1.223 28 H -0.221 1.221 29 H -0.184 1.184 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.098 0.902 33 H 0.116 0.884 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.088 0.912 37 H 0.248 0.752 38 H 0.219 0.781 39 H 0.129 0.871 40 H 0.153 0.847 41 H 0.098 0.902 42 H 0.171 0.829 43 H 0.150 0.850 44 H 0.123 0.877 45 H 0.010 0.990 46 H 0.062 0.938 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 20.250 -6.179 -11.924 24.299 hybrid contribution -0.494 -0.962 1.660 1.981 sum 19.757 -7.141 -10.264 23.381 Atomic orbital electron populations 1.21725 0.94458 1.01249 1.01117 1.20827 0.94476 0.93318 0.86694 0.96195 1.21949 0.94126 1.01040 0.98419 1.21647 0.97391 0.99771 0.95740 1.21573 0.78735 0.99268 0.97854 0.92731 1.45725 1.07713 1.26548 1.54692 1.17320 0.85889 0.81149 0.77564 1.90787 1.63337 1.44600 1.47975 1.20535 0.92782 0.98787 1.10156 1.22603 0.83054 1.01527 1.01651 1.45467 1.06531 1.21232 1.40014 1.24965 0.97479 0.88406 0.99158 1.70087 0.98710 1.27427 1.22640 1.21498 0.75735 0.98445 0.96578 1.88161 1.49727 1.20313 1.71800 1.23286 0.98099 0.80506 1.01214 1.23308 0.82655 0.98194 1.02030 1.20731 0.83830 0.95044 0.94906 1.44337 1.02394 1.65642 1.20312 1.19533 0.95224 1.36562 0.86688 0.90436 1.25861 0.99095 1.01122 0.99115 1.70187 1.25267 1.46445 1.16413 0.85358 0.79311 0.77966 0.78482 1.22264 1.22122 1.18362 0.93397 0.94289 0.90164 0.88435 0.92661 0.89853 0.91233 0.75243 0.78088 0.87109 0.84729 0.90228 0.82925 0.85045 0.87671 0.98998 0.93805 0.94755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.77 7.94 71.98 0.57 -4.20 16 2 C 0.15 6.37 3.50 44.97 0.16 6.53 16 3 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 4 C -0.12 -3.87 5.37 30.67 0.16 -3.71 16 5 C -0.11 -3.60 5.35 30.62 0.16 -3.43 16 6 C 0.13 5.73 2.60 45.07 0.12 5.85 16 7 H 0.05 2.68 7.58 -2.39 -0.02 2.66 16 8 N -0.70 -27.75 5.08 -445.53 -2.26 -30.01 16 9 C 0.59 25.40 7.78 86.63 0.67 26.07 16 10 O -0.59 -29.86 16.54 -4.12 -0.07 -29.93 16 11 C -0.09 -3.30 6.99 40.53 0.28 -3.02 16 12 C 0.05 1.47 11.38 83.92 0.95 2.42 16 13 N -0.45 -9.22 3.12 -512.41 -1.60 -10.82 16 14 C 0.17 3.77 7.79 138.04 1.08 4.85 16 15 N -0.47 -14.26 10.99 -175.89 -1.93 -16.20 16 16 C 0.16 2.15 7.29 71.36 0.52 2.67 16 17 O -0.38 -4.84 10.78 -148.98 -1.61 -6.44 16 18 C 0.05 0.27 6.81 72.13 0.49 0.76 16 19 C 0.06 0.54 7.28 86.50 0.63 1.17 16 20 C 0.18 9.86 4.87 86.36 0.42 10.28 16 21 N -0.60 -32.13 2.99 -675.23 -2.02 -34.15 16 22 C -0.25 -14.48 8.61 84.03 0.72 -13.76 16 23 H 0.08 4.29 6.20 -2.91 -0.02 4.27 16 24 C -0.06 -3.46 4.96 84.86 0.42 -3.04 16 25 N -0.94 -60.57 11.14 21.65 0.24 -60.33 16 26 Si 0.96 48.83 29.58 68.60 2.03 50.86 16 27 H -0.30 -15.26 7.11 99.48 0.71 -14.55 16 28 H -0.29 -14.93 7.11 99.48 0.71 -14.23 16 29 H -0.26 -12.20 7.11 99.48 0.71 -11.49 16 30 H 0.05 1.82 7.40 -2.39 -0.02 1.80 16 31 H 0.04 1.59 7.66 -2.39 -0.02 1.58 16 32 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.41 14.25 8.31 -92.71 -0.77 13.48 16 38 H 0.20 4.93 8.06 -2.91 -0.02 4.90 16 39 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.14 1.69 8.14 -2.38 -0.02 1.67 16 41 H 0.08 0.33 8.09 -2.38 -0.02 0.31 16 42 H 0.15 -0.03 8.14 -2.39 -0.02 -0.05 16 43 H 0.13 0.53 8.14 -2.39 -0.02 0.52 16 44 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 45 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 46 H 0.04 2.82 6.06 -2.39 -0.01 2.81 16 47 H 0.24 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -86.22 375.44 0.37 -85.85 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: 0.22 Total: 21.72 kcal Atomic # 6 Polarization: 22.07 SS G_CDS: 7.37 Total: 29.44 kcal Atomic # 7 Polarization: -143.92 SS G_CDS: -7.57 Total: -151.49 kcal Atomic # 8 Polarization: -34.70 SS G_CDS: -1.67 Total: -36.37 kcal Atomic # 14 Polarization: 48.83 SS G_CDS: 2.03 Total: 50.86 kcal Total: -86.22 0.37 -85.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071609306.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.239 kcal (2) G-P(sol) polarization free energy of solvation -86.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds