Wall clock time and date at job start Tue Mar 31 2020 19:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.70089 * 2 1 4 4 C 1.53194 * 109.58607 * 239.64750 * 2 1 3 5 5 C 1.53045 * 109.31159 * 185.57366 * 4 2 1 6 6 C 1.53041 * 109.53454 * 61.36464 * 5 4 2 7 7 H 1.09001 * 109.52361 * 178.66358 * 6 5 4 8 8 N 1.46499 * 109.49653 * 58.59060 * 6 5 4 9 9 C 1.34772 * 120.00291 * 155.16314 * 8 6 5 10 10 O 1.21671 * 119.99819 * 359.97438 * 9 8 6 11 11 C 1.46923 * 120.00271 * 179.72359 * 9 8 6 12 12 C 1.41698 * 126.55990 * 0.29190 * 11 9 8 13 13 N 1.30565 * 108.19232 * 179.97438 * 12 11 9 14 14 N 1.39356 * 109.06207 * 359.96481 * 13 12 11 15 15 C 1.35153 * 108.46201 * 359.81411 * 14 13 12 16 16 O 1.35463 * 123.86677 * 179.40811 * 15 14 13 17 17 C 1.43542 * 115.11878 * 345.07762 * 16 15 14 18 18 C 1.53248 * 109.17747 * 46.65749 * 17 16 15 19 19 C 1.46795 * 127.97471 * 180.13443 * 14 13 12 20 20 C 1.53192 * 109.31598 * 298.63423 * 6 5 4 21 21 N 1.46922 * 108.77227 * 54.63572 * 20 6 5 22 22 C 1.36944 * 120.62654 * 126.37327 * 21 20 6 23 23 H 1.07997 * 119.99418 * 209.02102 * 22 21 20 24 24 C 1.38806 * 120.00360 * 29.01886 * 22 21 20 25 25 N 1.31617 * 119.99933 * 15.02882 * 24 22 21 26 26 Si 1.86801 * 120.00043 * 195.02956 * 24 22 21 27 27 H 1.48497 * 109.47158 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47112 * 120.00210 * 26 24 22 29 29 H 1.48499 * 109.46749 * 240.00078 * 26 24 22 30 30 H 1.08998 * 109.46739 * 299.64251 * 1 2 3 31 31 H 1.08998 * 109.46955 * 59.64422 * 1 2 3 32 32 H 1.09003 * 109.46517 * 179.64579 * 1 2 3 33 33 H 1.08995 * 109.49971 * 305.52798 * 4 2 1 34 34 H 1.09000 * 109.49674 * 65.59766 * 4 2 1 35 35 H 1.09005 * 109.46087 * 301.34763 * 5 4 2 36 36 H 1.08998 * 109.46157 * 181.38570 * 5 4 2 37 37 H 0.97002 * 119.99940 * 335.15510 * 8 6 5 38 38 H 1.07997 * 125.90466 * 359.97438 * 12 11 9 39 39 H 1.09004 * 109.51766 * 286.74699 * 17 16 15 40 40 H 1.09002 * 109.51898 * 166.56869 * 17 16 15 41 41 H 1.09002 * 109.50847 * 175.94656 * 18 17 16 42 42 H 1.08996 * 109.54683 * 55.83366 * 18 17 16 43 43 H 1.08997 * 109.75874 * 282.57567 * 19 14 13 44 44 H 1.09002 * 109.75490 * 43.32641 * 19 14 13 45 45 H 1.08999 * 109.58429 * 174.42050 * 20 6 5 46 46 H 1.08993 * 109.58274 * 294.84772 * 20 6 5 47 47 H 0.96999 * 120.00369 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7293 -1.2455 5 6 3.5676 -0.8478 -1.1702 6 6 3.9570 -1.6656 0.0634 7 1 5.0412 -1.7700 0.1038 8 7 3.3407 -2.9923 -0.0150 9 6 3.8954 -4.0327 0.6380 10 8 4.9083 -3.8701 1.2922 11 6 3.2739 -5.3620 0.5643 12 6 2.1013 -5.7069 -0.1524 13 7 1.8723 -6.9795 0.0288 14 7 2.8644 -7.5076 0.8527 15 6 3.7247 -6.5166 1.1760 16 8 4.8039 -6.6853 1.9771 17 6 4.8114 -7.9003 2.7415 18 6 4.4472 -9.0736 1.8255 19 6 3.0096 -8.8923 1.3180 20 6 3.4651 -0.9469 1.3237 21 7 2.0227 -0.6996 1.1944 22 6 1.1538 -1.1136 2.1685 23 1 0.1362 -1.3682 1.9117 24 6 1.5810 -1.2061 3.4860 25 7 2.7039 -0.6278 3.8558 26 14 0.5621 -2.1515 4.7341 27 1 -0.6466 -2.7028 4.0706 28 1 1.3715 -3.2640 5.2930 29 1 0.1512 -1.2386 5.8309 30 1 -0.3633 0.5083 0.8932 31 1 -0.3633 0.5193 -0.8868 32 1 -0.3632 -1.0277 -0.0064 33 1 1.6031 -1.7252 -1.2914 34 1 1.7656 -0.1670 -2.1369 35 1 4.0062 0.1476 -1.0993 36 1 3.9379 -1.3446 -2.0670 37 1 2.5334 -3.1220 -0.5368 38 1 1.5007 -5.0336 -0.7459 39 1 4.0817 -7.8276 3.5480 40 1 5.8046 -8.0604 3.1611 41 1 4.5213 -10.0073 2.3830 42 1 5.1317 -9.1006 0.9777 43 1 2.3060 -9.0846 2.1279 44 1 2.8204 -9.5798 0.4936 45 1 3.6519 -1.5718 2.1970 46 1 3.9904 0.0020 1.4316 47 1 3.0027 -0.6927 4.7764 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071648383.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:10 Heat of formation + Delta-G solvation = 33.249328 kcal Electronic energy + Delta-G solvation = -30653.516630 eV Core-core repulsion = 26646.223357 eV Total energy + Delta-G solvation = -4007.293273 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.82614 -39.14213 -38.51415 -37.21502 -34.77066 -33.88905 -32.60591 -31.22448 -30.56271 -29.80716 -29.18204 -26.55370 -26.07331 -24.90034 -23.74584 -22.33582 -22.04400 -20.69605 -20.09766 -19.78313 -18.54726 -18.22654 -16.88733 -16.50295 -16.13762 -15.48584 -15.40047 -15.03578 -14.95075 -14.59728 -14.43275 -14.02247 -13.77254 -13.61840 -13.33233 -13.31183 -13.00270 -12.73334 -12.53543 -12.36233 -12.00138 -11.73945 -11.69163 -11.39835 -11.09840 -11.07216 -10.85359 -10.78094 -10.71970 -10.63041 -10.27864 -10.22138 -9.85955 -9.40709 -9.33220 -9.22960 -9.08099 -8.34807 -8.33231 -8.02773 -6.48192 -5.63746 -3.07329 1.69959 2.08160 2.37805 2.96550 3.44230 3.51380 3.52814 3.81050 4.04832 4.07387 4.22193 4.47295 4.55049 4.59477 4.85816 4.90581 5.01587 5.15543 5.28777 5.37625 5.42792 5.47559 5.52065 5.56002 5.62813 5.71852 5.79737 6.05903 6.13738 6.22945 6.26749 6.43081 6.44569 6.50178 6.55803 6.66865 6.73348 6.84770 7.05516 7.15111 7.23623 7.26117 7.57460 7.59627 7.85794 7.95633 8.40415 8.61055 9.13677 9.35096 10.00053 10.55717 11.44025 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011761 B = 0.004567 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.174144 B = 6129.576753 C = 7040.478420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.166 3.834 3 H 0.024 0.976 4 C -0.130 4.130 5 C -0.118 4.118 6 C 0.122 3.878 7 H 0.074 0.926 8 N -0.698 5.698 9 C 0.595 3.405 10 O -0.548 6.548 11 C -0.291 4.291 12 C 0.106 3.894 13 N -0.291 5.291 14 N -0.403 5.403 15 C 0.331 3.669 16 O -0.261 6.261 17 C 0.042 3.958 18 C -0.176 4.176 19 C 0.129 3.871 20 C 0.162 3.838 21 N -0.582 5.582 22 C -0.245 4.245 23 H 0.068 0.932 24 C 0.006 3.994 25 N -0.899 5.899 26 Si 0.893 3.107 27 H -0.279 1.279 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.060 0.940 31 H 0.036 0.964 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.069 0.931 36 H 0.051 0.949 37 H 0.391 0.609 38 H 0.195 0.805 39 H 0.075 0.925 40 H 0.122 0.878 41 H 0.111 0.889 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.103 0.897 45 H 0.098 0.902 46 H 0.023 0.977 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.745 -14.885 -8.789 17.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.059 3.941 3 H 0.041 0.959 4 C -0.169 4.169 5 C -0.156 4.156 6 C 0.016 3.984 7 H 0.092 0.908 8 N -0.348 5.348 9 C 0.382 3.618 10 O -0.426 6.426 11 C -0.306 4.306 12 C -0.082 4.082 13 N -0.113 5.113 14 N -0.197 5.197 15 C 0.159 3.841 16 O -0.165 6.165 17 C -0.033 4.033 18 C -0.215 4.215 19 C 0.009 3.991 20 C 0.035 3.965 21 N -0.306 5.306 22 C -0.374 4.374 23 H 0.085 0.915 24 C -0.193 4.193 25 N -0.543 5.543 26 Si 0.724 3.276 27 H -0.204 1.204 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.226 0.774 38 H 0.212 0.788 39 H 0.093 0.907 40 H 0.140 0.860 41 H 0.129 0.871 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.121 0.879 45 H 0.116 0.884 46 H 0.041 0.959 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.034 -15.697 -8.276 17.861 hybrid contribution -0.472 -0.186 0.861 1.000 sum 1.562 -15.883 -7.414 17.598 Atomic orbital electron populations 1.21797 0.96217 1.01186 1.00105 1.20452 0.92781 0.93607 0.87276 0.95882 1.22064 0.95259 1.00649 0.98966 1.21689 0.96916 1.00079 0.96949 1.21711 0.96931 0.81841 0.97918 0.90764 1.45530 1.29473 1.08244 1.51572 1.16782 0.83486 0.82462 0.79057 1.90778 1.25501 1.84847 1.41517 1.19311 1.02769 0.93311 1.15217 1.23991 0.94446 0.92627 0.97159 1.77011 1.09869 1.11079 1.13292 1.48918 1.21332 1.08315 1.41149 1.19727 0.84440 0.88746 0.91177 1.86763 1.35903 1.40452 1.53377 1.23231 1.05194 0.81912 0.92980 1.22672 0.96036 1.00922 1.01848 1.21937 0.97477 0.78837 1.00865 1.21199 0.83546 0.96955 0.94803 1.44047 1.02788 1.64744 1.18990 1.19102 0.94573 1.37619 0.86153 0.91468 1.25012 0.97622 0.99721 0.96927 1.69988 1.23156 1.44568 1.16634 0.86363 0.79657 0.79744 0.81884 1.20382 1.21872 1.21898 0.92118 0.94505 0.92938 0.92643 0.92994 0.91272 0.93061 0.77410 0.78808 0.90665 0.85994 0.87109 0.89201 0.89187 0.87911 0.88396 0.95938 0.93853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 7.94 37.16 0.30 -2.18 16 2 C 0.17 3.30 3.50 -67.60 -0.24 3.06 16 3 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 4 C -0.13 -2.10 5.21 -26.61 -0.14 -2.23 16 5 C -0.12 -1.92 5.59 -26.69 -0.15 -2.07 16 6 C 0.12 2.43 2.81 -67.81 -0.19 2.24 16 7 H 0.07 1.54 7.58 -51.93 -0.39 1.14 16 8 N -0.70 -13.30 4.91 -54.92 -0.27 -13.57 16 9 C 0.60 12.59 7.76 -12.75 -0.10 12.49 16 10 O -0.55 -13.64 16.19 2.87 0.05 -13.60 16 11 C -0.29 -5.35 6.14 -105.07 -0.64 -6.00 16 12 C 0.11 1.63 11.51 -16.77 -0.19 1.43 16 13 N -0.29 -4.42 12.54 30.97 0.39 -4.03 16 14 N -0.40 -5.67 4.04 -60.46 -0.24 -5.91 16 15 C 0.33 5.62 7.50 -16.09 -0.12 5.50 16 16 O -0.26 -4.25 10.17 -20.43 -0.21 -4.46 16 17 C 0.04 0.42 7.02 37.29 0.26 0.68 16 18 C -0.18 -1.19 6.16 -26.33 -0.16 -1.35 16 19 C 0.13 1.12 7.41 -3.61 -0.03 1.10 16 20 C 0.16 3.98 4.89 -3.71 -0.02 3.96 16 21 N -0.58 -14.11 2.91 -164.78 -0.48 -14.58 16 22 C -0.24 -6.58 8.60 -15.06 -0.13 -6.71 16 23 H 0.07 1.77 6.21 -52.49 -0.33 1.44 16 24 C 0.01 0.17 4.96 -17.43 -0.09 0.08 16 25 N -0.90 -27.08 11.14 55.49 0.62 -26.47 16 26 Si 0.89 22.68 29.58 -169.99 -5.03 17.65 16 27 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 28 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 29 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 30 H 0.06 1.22 7.62 -51.93 -0.40 0.82 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.96 7.44 -51.93 -0.39 0.57 16 33 H 0.05 0.87 6.40 -51.93 -0.33 0.53 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.39 6.53 5.73 -40.82 -0.23 6.30 16 38 H 0.20 2.33 7.51 -52.49 -0.39 1.93 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.10 2.87 6.06 -51.93 -0.31 2.55 16 46 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 370.35 15.07 5.58 5.58 Total: -1.00 -36.40 370.35 -8.22 -44.61 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -6.98 Total: 4.77 kcal Atomic # 6 Polarization: 11.64 SS G_CDS: -1.64 Total: 10.01 kcal Atomic # 7 Polarization: -64.58 SS G_CDS: 0.01 Total: -64.57 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.16 Total: -18.06 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.03 Total: 17.65 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.40 -8.22 -44.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071648383.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.864 kcal (2) G-P(sol) polarization free energy of solvation -36.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds