Wall clock time and date at job start Tue Mar 31 2020 19:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.70089 * 2 1 4 4 C 1.53194 * 109.58607 * 239.64750 * 2 1 3 5 5 C 1.53045 * 109.31159 * 185.57366 * 4 2 1 6 6 C 1.53041 * 109.53454 * 61.36464 * 5 4 2 7 7 H 1.09001 * 109.52361 * 178.66358 * 6 5 4 8 8 N 1.46499 * 109.49653 * 58.59060 * 6 5 4 9 9 C 1.34772 * 120.00291 * 155.16314 * 8 6 5 10 10 O 1.21671 * 119.99819 * 359.97438 * 9 8 6 11 11 C 1.46923 * 120.00271 * 179.72359 * 9 8 6 12 12 C 1.41698 * 126.55990 * 0.29190 * 11 9 8 13 13 N 1.30565 * 108.19232 * 179.97438 * 12 11 9 14 14 N 1.39356 * 109.06207 * 359.96481 * 13 12 11 15 15 C 1.35153 * 108.46201 * 359.81411 * 14 13 12 16 16 O 1.35463 * 123.86677 * 179.40811 * 15 14 13 17 17 C 1.43542 * 115.11878 * 345.07762 * 16 15 14 18 18 C 1.53248 * 109.17747 * 46.65749 * 17 16 15 19 19 C 1.46795 * 127.97471 * 180.13443 * 14 13 12 20 20 C 1.53192 * 109.31598 * 298.63423 * 6 5 4 21 21 N 1.46922 * 108.77227 * 54.63572 * 20 6 5 22 22 C 1.36944 * 120.62654 * 126.37327 * 21 20 6 23 23 H 1.07997 * 119.99418 * 209.02102 * 22 21 20 24 24 C 1.38806 * 120.00360 * 29.01886 * 22 21 20 25 25 N 1.31617 * 119.99933 * 15.02882 * 24 22 21 26 26 Si 1.86801 * 120.00043 * 195.02956 * 24 22 21 27 27 H 1.48497 * 109.47158 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47112 * 120.00210 * 26 24 22 29 29 H 1.48499 * 109.46749 * 240.00078 * 26 24 22 30 30 H 1.08998 * 109.46739 * 299.64251 * 1 2 3 31 31 H 1.08998 * 109.46955 * 59.64422 * 1 2 3 32 32 H 1.09003 * 109.46517 * 179.64579 * 1 2 3 33 33 H 1.08995 * 109.49971 * 305.52798 * 4 2 1 34 34 H 1.09000 * 109.49674 * 65.59766 * 4 2 1 35 35 H 1.09005 * 109.46087 * 301.34763 * 5 4 2 36 36 H 1.08998 * 109.46157 * 181.38570 * 5 4 2 37 37 H 0.97002 * 119.99940 * 335.15510 * 8 6 5 38 38 H 1.07997 * 125.90466 * 359.97438 * 12 11 9 39 39 H 1.09004 * 109.51766 * 286.74699 * 17 16 15 40 40 H 1.09002 * 109.51898 * 166.56869 * 17 16 15 41 41 H 1.09002 * 109.50847 * 175.94656 * 18 17 16 42 42 H 1.08996 * 109.54683 * 55.83366 * 18 17 16 43 43 H 1.08997 * 109.75874 * 282.57567 * 19 14 13 44 44 H 1.09002 * 109.75490 * 43.32641 * 19 14 13 45 45 H 1.08999 * 109.58429 * 174.42050 * 20 6 5 46 46 H 1.08993 * 109.58274 * 294.84772 * 20 6 5 47 47 H 0.96999 * 120.00369 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7293 -1.2455 5 6 3.5676 -0.8478 -1.1702 6 6 3.9570 -1.6656 0.0634 7 1 5.0412 -1.7700 0.1038 8 7 3.3407 -2.9923 -0.0150 9 6 3.8954 -4.0327 0.6380 10 8 4.9083 -3.8701 1.2922 11 6 3.2739 -5.3620 0.5643 12 6 2.1013 -5.7069 -0.1524 13 7 1.8723 -6.9795 0.0288 14 7 2.8644 -7.5076 0.8527 15 6 3.7247 -6.5166 1.1760 16 8 4.8039 -6.6853 1.9771 17 6 4.8114 -7.9003 2.7415 18 6 4.4472 -9.0736 1.8255 19 6 3.0096 -8.8923 1.3180 20 6 3.4651 -0.9469 1.3237 21 7 2.0227 -0.6996 1.1944 22 6 1.1538 -1.1136 2.1685 23 1 0.1362 -1.3682 1.9117 24 6 1.5810 -1.2061 3.4860 25 7 2.7039 -0.6278 3.8558 26 14 0.5621 -2.1515 4.7341 27 1 -0.6466 -2.7028 4.0706 28 1 1.3715 -3.2640 5.2930 29 1 0.1512 -1.2386 5.8309 30 1 -0.3633 0.5083 0.8932 31 1 -0.3633 0.5193 -0.8868 32 1 -0.3632 -1.0277 -0.0064 33 1 1.6031 -1.7252 -1.2914 34 1 1.7656 -0.1670 -2.1369 35 1 4.0062 0.1476 -1.0993 36 1 3.9379 -1.3446 -2.0670 37 1 2.5334 -3.1220 -0.5368 38 1 1.5007 -5.0336 -0.7459 39 1 4.0817 -7.8276 3.5480 40 1 5.8046 -8.0604 3.1611 41 1 4.5213 -10.0073 2.3830 42 1 5.1317 -9.1006 0.9777 43 1 2.3060 -9.0846 2.1279 44 1 2.8204 -9.5798 0.4936 45 1 3.6519 -1.5718 2.1970 46 1 3.9904 0.0020 1.4316 47 1 3.0027 -0.6927 4.7764 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071648383.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:09 Heat of formation + Delta-G solvation = 5.865216 kcal Electronic energy + Delta-G solvation = -30654.704094 eV Core-core repulsion = 26646.223357 eV Total energy + Delta-G solvation = -4008.480737 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.93861 -40.70658 -39.65484 -38.87916 -35.68442 -35.62664 -34.43519 -32.49245 -31.80930 -31.67708 -30.46649 -27.82512 -27.35360 -26.71515 -24.88165 -23.82091 -23.49725 -22.15569 -21.55991 -20.77535 -20.24976 -19.41819 -18.25651 -17.94877 -17.53197 -17.07190 -16.70982 -16.27584 -16.02310 -15.86508 -15.83326 -15.49885 -15.41061 -15.15346 -14.86160 -14.55328 -14.45362 -14.27453 -13.91887 -13.57046 -13.43378 -12.97128 -12.83786 -12.70755 -12.60591 -12.57262 -12.48576 -12.35643 -12.19381 -12.06892 -12.01638 -11.82236 -11.50992 -11.14481 -10.98355 -10.76511 -10.48801 -10.29062 -9.89537 -9.44144 -8.52106 -7.77560 -5.22113 0.47348 1.08784 1.12821 1.38165 1.41242 1.49244 2.00195 2.45425 2.51788 2.67666 3.15385 3.38506 3.46603 3.66152 3.69755 3.88695 3.98159 4.05128 4.13057 4.18417 4.22126 4.25833 4.35260 4.47701 4.53123 4.57433 4.60486 4.73825 4.81943 4.84875 4.89999 5.03491 5.06838 5.11725 5.18181 5.18929 5.34096 5.38469 5.42738 5.63534 5.69239 5.76349 5.82516 5.87389 6.16367 6.42780 6.49242 6.88379 7.23278 7.57140 7.98708 8.48867 9.27568 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011761 B = 0.004567 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.174144 B = 6129.576753 C = 7040.478420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.154 3.846 3 H 0.013 0.987 4 C -0.119 4.119 5 C -0.109 4.109 6 C 0.130 3.870 7 H 0.060 0.940 8 N -0.686 5.686 9 C 0.589 3.411 10 O -0.600 6.600 11 C -0.334 4.334 12 C 0.113 3.887 13 N -0.296 5.296 14 N -0.394 5.394 15 C 0.325 3.675 16 O -0.297 6.297 17 C 0.025 3.975 18 C -0.161 4.161 19 C 0.114 3.886 20 C 0.172 3.828 21 N -0.594 5.594 22 C -0.227 4.227 23 H 0.079 0.921 24 C -0.058 4.058 25 N -0.938 5.938 26 Si 0.946 3.054 27 H -0.258 1.258 28 H -0.309 1.309 29 H -0.293 1.293 30 H 0.033 0.967 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.405 0.595 38 H 0.224 0.776 39 H 0.075 0.925 40 H 0.144 0.856 41 H 0.157 0.843 42 H 0.088 0.912 43 H 0.106 0.894 44 H 0.127 0.873 45 H 0.045 0.955 46 H -0.006 1.006 47 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.205 -17.130 -11.500 20.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.048 3.952 3 H 0.030 0.970 4 C -0.158 4.158 5 C -0.147 4.147 6 C 0.024 3.976 7 H 0.078 0.922 8 N -0.336 5.336 9 C 0.378 3.622 10 O -0.483 6.483 11 C -0.349 4.349 12 C -0.075 4.075 13 N -0.118 5.118 14 N -0.188 5.188 15 C 0.151 3.849 16 O -0.201 6.201 17 C -0.049 4.049 18 C -0.199 4.199 19 C -0.005 4.005 20 C 0.045 3.955 21 N -0.318 5.318 22 C -0.358 4.358 23 H 0.096 0.904 24 C -0.252 4.252 25 N -0.586 5.586 26 Si 0.776 3.224 27 H -0.182 1.182 28 H -0.238 1.238 29 H -0.221 1.221 30 H 0.052 0.948 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.243 0.757 38 H 0.240 0.760 39 H 0.093 0.907 40 H 0.162 0.838 41 H 0.174 0.826 42 H 0.107 0.893 43 H 0.124 0.876 44 H 0.145 0.855 45 H 0.064 0.936 46 H 0.012 0.988 47 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 0.017 -17.973 -11.044 21.095 hybrid contribution 0.166 0.467 1.721 1.790 sum 0.182 -17.507 -9.323 19.836 Atomic orbital electron populations 1.21728 0.94590 1.01484 1.00770 1.20787 0.94220 0.93149 0.87001 0.96957 1.21965 0.94531 1.01251 0.98024 1.21659 0.97489 0.99709 0.95859 1.21442 0.96097 0.82448 0.97616 0.92228 1.45386 1.29732 1.07376 1.51128 1.17301 0.82938 0.83869 0.78135 1.90735 1.27916 1.85829 1.43811 1.19310 1.04859 0.92618 1.18079 1.24353 0.93443 0.93015 0.96707 1.76951 1.10299 1.10956 1.13558 1.49337 1.19974 1.09536 1.39999 1.19857 0.84795 0.89363 0.90898 1.86724 1.35927 1.43755 1.53720 1.23713 1.06781 0.81167 0.93213 1.22678 0.94568 1.01174 1.01469 1.22529 0.99170 0.76436 1.02338 1.20842 0.84210 0.95067 0.95359 1.44264 1.02152 1.65419 1.19919 1.19465 0.94998 1.34975 0.86373 0.90377 1.25703 0.98862 1.01647 0.99004 1.70167 1.25240 1.47115 1.16094 0.85495 0.78800 0.78027 0.80069 1.18227 1.23752 1.22070 0.94773 0.90538 0.92770 0.91523 0.89018 0.91002 0.89588 0.75749 0.76007 0.90656 0.83808 0.82561 0.89332 0.87550 0.85477 0.93628 0.98813 0.95081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.32 7.94 71.98 0.57 -3.75 16 2 C 0.15 5.84 3.50 44.98 0.16 6.00 16 3 H 0.01 0.51 8.14 -2.38 -0.02 0.50 16 4 C -0.12 -3.37 5.21 30.67 0.16 -3.21 16 5 C -0.11 -3.28 5.59 30.62 0.17 -3.11 16 6 C 0.13 5.28 2.81 45.07 0.13 5.40 16 7 H 0.06 2.58 7.58 -2.39 -0.02 2.57 16 8 N -0.69 -26.15 4.91 -445.90 -2.19 -28.34 16 9 C 0.59 25.81 7.76 86.52 0.67 26.48 16 10 O -0.60 -31.90 16.19 -2.01 -0.03 -31.93 16 11 C -0.33 -12.40 6.14 -20.15 -0.12 -12.53 16 12 C 0.11 3.31 11.51 85.74 0.99 4.29 16 13 N -0.30 -8.44 12.54 -55.94 -0.70 -9.14 16 14 N -0.39 -10.49 4.04 -456.67 -1.85 -12.33 16 15 C 0.33 11.11 7.50 84.18 0.63 11.74 16 16 O -0.30 -9.94 10.17 -85.37 -0.87 -10.80 16 17 C 0.03 0.47 7.02 72.07 0.51 0.98 16 18 C -0.16 -1.69 6.16 30.85 0.19 -1.50 16 19 C 0.11 1.63 7.41 86.50 0.64 2.28 16 20 C 0.17 8.90 4.89 86.36 0.42 9.33 16 21 N -0.59 -29.07 2.91 -675.24 -1.96 -31.03 16 22 C -0.23 -12.35 8.60 84.03 0.72 -11.63 16 23 H 0.08 4.03 6.21 -2.91 -0.02 4.02 16 24 C -0.06 -3.41 4.96 84.86 0.42 -2.98 16 25 N -0.94 -59.92 11.14 21.65 0.24 -59.68 16 26 Si 0.95 48.04 29.58 68.60 2.03 50.07 16 27 H -0.26 -12.09 7.11 99.48 0.71 -11.39 16 28 H -0.31 -16.43 7.11 99.48 0.71 -15.72 16 29 H -0.29 -14.81 7.11 99.48 0.71 -14.10 16 30 H 0.03 1.31 7.62 -2.39 -0.02 1.29 16 31 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.05 1.80 7.44 -2.39 -0.02 1.78 16 33 H 0.07 1.78 6.40 -2.39 -0.02 1.76 16 34 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 36 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.41 12.83 5.73 -92.71 -0.53 12.29 16 38 H 0.22 4.75 7.51 -2.91 -0.02 4.73 16 39 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 40 H 0.14 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.16 0.26 8.14 -2.39 -0.02 0.24 16 42 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.05 2.85 6.06 -2.39 -0.01 2.84 16 46 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 47 H 0.24 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -87.08 370.35 1.39 -85.69 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: 0.46 Total: 19.71 kcal Atomic # 6 Polarization: 21.53 SS G_CDS: 6.25 Total: 27.79 kcal Atomic # 7 Polarization: -134.07 SS G_CDS: -6.46 Total: -140.53 kcal Atomic # 8 Polarization: -41.83 SS G_CDS: -0.90 Total: -42.74 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 2.03 Total: 50.07 kcal Total: -87.08 1.39 -85.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071648383.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.558 kcal (2) G-P(sol) polarization free energy of solvation -87.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds