Wall clock time and date at job start Tue Mar 31 2020 19:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.58439 * 2 1 4 4 C 1.53191 * 109.58976 * 120.28310 * 2 1 3 5 5 C 1.53041 * 109.31254 * 174.56464 * 4 2 1 6 6 C 1.53036 * 109.53965 * 298.63797 * 5 4 2 7 7 H 1.09004 * 109.50093 * 301.41194 * 6 5 4 8 8 N 1.46500 * 109.49913 * 181.31441 * 6 5 4 9 9 C 1.34780 * 120.00236 * 154.99532 * 8 6 5 10 10 O 1.21667 * 119.99654 * 0.02562 * 9 8 6 11 11 C 1.46921 * 120.00068 * 180.02562 * 9 8 6 12 12 C 1.41693 * 126.56392 * 359.69144 * 11 9 8 13 13 N 1.30562 * 108.19714 * 179.83177 * 12 11 9 14 14 N 1.39356 * 109.05601 * 0.37185 * 13 12 11 15 15 C 1.35154 * 108.46844 * 359.82278 * 14 13 12 16 16 O 1.35459 * 123.87418 * 179.85662 * 15 14 13 17 17 C 1.43538 * 115.05382 * 344.47518 * 16 15 14 18 18 C 1.53252 * 109.18067 * 46.91136 * 17 16 15 19 19 C 1.46803 * 127.97375 * 179.88200 * 14 13 12 20 20 C 1.53194 * 109.31549 * 61.36447 * 6 5 4 21 21 N 1.46926 * 109.58537 * 239.72184 * 2 1 3 22 22 C 1.36935 * 120.63603 * 6.46146 * 21 2 1 23 23 H 1.08002 * 119.99660 * 330.34114 * 22 21 2 24 24 C 1.38810 * 120.00726 * 150.33821 * 22 21 2 25 25 N 1.31624 * 119.99291 * 344.65073 * 24 22 21 26 26 Si 1.86796 * 120.00435 * 164.64705 * 24 22 21 27 27 H 1.48498 * 109.46975 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.47091 * 119.99903 * 26 24 22 29 29 H 1.48491 * 109.47212 * 240.00025 * 26 24 22 30 30 H 1.08993 * 109.47152 * 299.99270 * 1 2 3 31 31 H 1.08996 * 109.47418 * 59.99956 * 1 2 3 32 32 H 1.09007 * 109.46915 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.49969 * 294.51928 * 4 2 1 34 34 H 1.09001 * 109.49441 * 54.61989 * 4 2 1 35 35 H 1.09001 * 109.45767 * 58.65870 * 5 4 2 36 36 H 1.08998 * 109.45857 * 178.61761 * 5 4 2 37 37 H 0.96998 * 120.00464 * 335.00627 * 8 6 5 38 38 H 1.08000 * 125.89905 * 359.96358 * 12 11 9 39 39 H 1.08999 * 109.51670 * 166.81996 * 17 16 15 40 40 H 1.08995 * 109.52121 * 286.99999 * 17 16 15 41 41 H 1.09008 * 109.50924 * 55.82172 * 18 17 16 42 42 H 1.08999 * 109.50732 * 175.90490 * 18 17 16 43 43 H 1.08998 * 109.75415 * 43.27025 * 19 14 13 44 44 H 1.08996 * 109.79961 * 282.53684 * 19 14 13 45 45 H 1.09000 * 109.58713 * 65.15122 * 20 6 5 46 46 H 1.08999 * 109.58856 * 185.43562 * 20 6 5 47 47 H 0.97004 * 119.99680 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7278 1.2463 5 6 3.5679 -0.8433 1.1728 6 6 3.9604 -1.6607 -0.0600 7 1 3.5038 -2.6488 -0.0020 8 7 5.4181 -1.7973 -0.1124 9 6 5.9745 -2.8392 -0.7614 10 8 5.2661 -3.6662 -1.3043 11 6 7.4363 -2.9765 -0.8134 12 6 8.3876 -2.0975 -0.2389 13 7 9.5802 -2.5615 -0.4981 14 7 9.4606 -3.7326 -1.2439 15 6 8.1469 -3.9847 -1.4373 16 8 7.6764 -5.0504 -2.1286 17 6 8.6472 -5.7218 -2.9454 18 6 9.9233 -5.9481 -2.1275 19 6 10.5357 -4.5896 -1.7585 20 6 3.4685 -0.9434 -1.3212 21 7 2.0225 -0.6979 -1.1954 22 6 1.1534 -1.1128 -2.1689 23 1 0.1395 -1.3794 -1.9096 24 6 1.5755 -1.1906 -3.4890 25 7 2.6877 -0.5928 -3.8605 26 14 0.5651 -2.1436 -4.7381 27 1 -0.6318 -2.7174 -4.0723 28 1 0.1349 -1.2303 -5.8272 29 1 1.3885 -3.2400 -5.3079 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7639 -0.1655 2.1371 34 1 1.6051 -1.7246 1.2920 35 1 4.0045 0.1529 1.1021 36 1 3.9382 -1.3390 2.0701 37 1 5.9829 -1.1379 0.3202 38 1 8.1647 -1.2001 0.3191 39 1 8.2478 -6.6825 -3.2703 40 1 8.8770 -5.1084 -3.8165 41 1 9.6800 -6.4970 -1.2176 42 1 10.6375 -6.5216 -2.7184 43 1 11.2979 -4.7251 -0.9912 44 1 10.9802 -4.1333 -2.6429 45 1 3.9919 0.0066 -1.4289 46 1 3.6599 -1.5671 -2.1944 47 1 2.9825 -0.6468 -4.7831 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071648385.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:16 Heat of formation + Delta-G solvation = 30.566995 kcal Electronic energy + Delta-G solvation = -29770.343820 eV Core-core repulsion = 25762.934232 eV Total energy + Delta-G solvation = -4007.409588 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.95992 -39.13765 -38.58212 -37.31020 -34.88072 -34.15449 -32.68221 -31.29757 -30.64161 -29.80549 -29.30473 -26.65804 -25.92315 -24.92727 -23.69036 -22.45699 -22.07038 -20.73426 -19.93596 -19.77882 -19.21532 -18.19035 -16.89262 -16.57861 -16.29431 -15.64764 -15.42534 -15.13675 -15.05231 -14.73559 -14.56248 -13.95103 -13.72196 -13.65339 -13.45271 -13.30116 -13.24206 -12.74918 -12.59941 -12.24354 -12.07980 -11.79846 -11.71915 -11.49590 -11.33078 -11.01833 -10.88278 -10.78745 -10.63566 -10.37013 -10.28786 -10.14607 -9.85522 -9.60410 -9.37214 -9.31410 -9.16099 -8.48430 -8.32226 -8.20756 -6.48755 -5.63400 -3.07739 1.57133 1.94924 2.21685 2.85576 3.48577 3.56602 3.57797 3.68810 3.90836 3.95157 4.04556 4.38963 4.43905 4.63174 4.74489 4.81068 4.90845 5.08867 5.13959 5.28593 5.39397 5.47089 5.49421 5.51979 5.66208 5.71457 5.81319 5.94625 6.09325 6.23385 6.33707 6.37695 6.45068 6.49731 6.56447 6.65121 6.74191 6.89182 7.11105 7.14203 7.18270 7.23393 7.43466 7.48445 7.89050 7.97246 8.21178 8.61513 8.97276 9.35422 10.00055 10.56318 11.44763 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013508 B = 0.003515 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.358569 B = 7964.584434 C = 9452.520558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.121 3.879 7 H 0.081 0.919 8 N -0.718 5.718 9 C 0.592 3.408 10 O -0.533 6.533 11 C -0.297 4.297 12 C 0.103 3.897 13 N -0.290 5.290 14 N -0.401 5.401 15 C 0.334 3.666 16 O -0.260 6.260 17 C 0.042 3.958 18 C -0.177 4.177 19 C 0.129 3.871 20 C 0.168 3.832 21 N -0.584 5.584 22 C -0.251 4.251 23 H 0.070 0.930 24 C 0.007 3.993 25 N -0.899 5.899 26 Si 0.898 3.102 27 H -0.277 1.277 28 H -0.292 1.292 29 H -0.289 1.289 30 H 0.037 0.963 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.389 0.611 38 H 0.196 0.804 39 H 0.123 0.877 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.112 0.888 43 H 0.103 0.897 44 H 0.091 0.909 45 H 0.017 0.983 46 H 0.093 0.907 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.674 -6.656 7.684 19.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.166 4.166 5 C -0.154 4.154 6 C 0.016 3.984 7 H 0.099 0.901 8 N -0.369 5.369 9 C 0.378 3.622 10 O -0.410 6.410 11 C -0.312 4.312 12 C -0.085 4.085 13 N -0.111 5.111 14 N -0.196 5.196 15 C 0.162 3.838 16 O -0.164 6.164 17 C -0.033 4.033 18 C -0.216 4.216 19 C 0.009 3.991 20 C 0.042 3.958 21 N -0.308 5.308 22 C -0.380 4.380 23 H 0.087 0.913 24 C -0.192 4.192 25 N -0.543 5.543 26 Si 0.728 3.272 27 H -0.202 1.202 28 H -0.219 1.219 29 H -0.216 1.216 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.222 0.778 38 H 0.213 0.787 39 H 0.141 0.859 40 H 0.094 0.906 41 H 0.108 0.892 42 H 0.130 0.870 43 H 0.122 0.878 44 H 0.109 0.891 45 H 0.035 0.965 46 H 0.111 0.889 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 17.278 -7.315 7.148 20.078 hybrid contribution -0.569 -0.331 -0.755 1.001 sum 16.709 -7.646 6.393 19.456 Atomic orbital electron populations 1.21802 0.96125 1.01357 1.00097 1.20478 0.92960 0.93568 0.87147 0.95829 1.22044 0.94461 1.01266 0.98824 1.21677 0.97237 0.99652 0.96848 1.21894 0.77864 1.00757 0.97928 0.90094 1.45769 1.08188 1.26636 1.56300 1.16861 0.85229 0.81571 0.78524 1.90847 1.62720 1.42252 1.45156 1.19306 0.94920 0.99238 1.17714 1.24002 0.88512 0.98662 0.97360 1.77017 1.22186 0.96962 1.14981 1.48943 1.04299 1.21698 1.44662 1.19752 0.83707 0.88214 0.92127 1.86793 1.34670 1.38264 1.56638 1.23248 0.88402 0.99193 0.92484 1.22683 0.99064 0.96783 1.03028 1.21957 0.88460 0.88163 1.00550 1.21117 0.83313 0.96878 0.94533 1.44090 1.02666 1.64852 1.19162 1.19158 0.94998 1.37854 0.86012 0.91284 1.25069 0.97755 0.99387 0.97022 1.70020 1.23967 1.43876 1.16464 0.86288 0.79641 0.79714 0.81536 1.20234 1.21909 1.21576 0.94426 0.92053 0.92830 0.92789 0.92120 0.92307 0.93088 0.77823 0.78686 0.85887 0.90571 0.89154 0.87008 0.87834 0.89100 0.96522 0.88924 0.93897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 7.95 37.16 0.30 -2.34 16 2 C 0.17 3.48 3.49 -67.60 -0.24 3.24 16 3 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.22 5.37 -26.61 -0.14 -2.36 16 5 C -0.12 -1.94 5.35 -26.69 -0.14 -2.08 16 6 C 0.12 2.47 2.61 -67.81 -0.18 2.29 16 7 H 0.08 1.89 7.58 -51.93 -0.39 1.49 16 8 N -0.72 -12.64 5.07 -54.92 -0.28 -12.92 16 9 C 0.59 11.76 7.76 -12.74 -0.10 11.66 16 10 O -0.53 -13.17 16.19 2.87 0.05 -13.12 16 11 C -0.30 -4.90 6.14 -105.07 -0.64 -5.55 16 12 C 0.10 1.34 11.51 -16.77 -0.19 1.15 16 13 N -0.29 -3.85 12.54 30.97 0.39 -3.47 16 14 N -0.40 -5.01 4.04 -60.46 -0.24 -5.25 16 15 C 0.33 5.17 7.50 -16.09 -0.12 5.05 16 16 O -0.26 -3.96 10.18 -20.41 -0.21 -4.17 16 17 C 0.04 0.37 7.02 37.29 0.26 0.63 16 18 C -0.18 -1.02 6.17 -26.33 -0.16 -1.18 16 19 C 0.13 0.95 7.41 -3.61 -0.03 0.92 16 20 C 0.17 4.23 4.87 -3.55 -0.02 4.21 16 21 N -0.58 -14.99 3.00 -164.55 -0.49 -15.49 16 22 C -0.25 -7.05 8.58 -15.06 -0.13 -7.18 16 23 H 0.07 1.89 6.23 -52.49 -0.33 1.57 16 24 C 0.01 0.19 4.95 -17.43 -0.09 0.10 16 25 N -0.90 -27.42 11.23 55.49 0.62 -26.80 16 26 Si 0.90 22.96 29.58 -169.99 -5.03 17.93 16 27 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 28 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 29 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 1.27 7.65 -51.93 -0.40 0.88 16 32 H 0.05 1.05 7.42 -51.92 -0.39 0.67 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.39 5.29 7.56 -40.82 -0.31 4.99 16 38 H 0.20 1.77 7.51 -52.49 -0.39 1.37 16 39 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.09 0.57 8.14 -51.92 -0.42 0.15 16 42 H 0.11 0.26 8.14 -51.93 -0.42 -0.17 16 43 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.09 2.76 6.16 -51.93 -0.32 2.44 16 47 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 374.07 15.07 5.64 5.64 Total: -1.00 -37.82 374.07 -8.33 -46.15 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -7.16 Total: 2.90 kcal Atomic # 6 Polarization: 10.20 SS G_CDS: -1.62 Total: 8.58 kcal Atomic # 7 Polarization: -63.91 SS G_CDS: 0.00 Total: -63.92 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.16 Total: -17.29 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.03 Total: 17.93 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -37.82 -8.33 -46.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071648385.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.721 kcal (2) G-P(sol) polarization free energy of solvation -37.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds