Wall clock time and date at job start Tue Mar 31 2020 19:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.58439 * 2 1 4 4 C 1.53191 * 109.58976 * 120.28310 * 2 1 3 5 5 C 1.53041 * 109.31254 * 174.56464 * 4 2 1 6 6 C 1.53036 * 109.53965 * 298.63797 * 5 4 2 7 7 H 1.09004 * 109.50093 * 301.41194 * 6 5 4 8 8 N 1.46500 * 109.49913 * 181.31441 * 6 5 4 9 9 C 1.34780 * 120.00236 * 154.99532 * 8 6 5 10 10 O 1.21667 * 119.99654 * 0.02562 * 9 8 6 11 11 C 1.46921 * 120.00068 * 180.02562 * 9 8 6 12 12 C 1.41693 * 126.56392 * 359.69144 * 11 9 8 13 13 N 1.30562 * 108.19714 * 179.83177 * 12 11 9 14 14 N 1.39356 * 109.05601 * 0.37185 * 13 12 11 15 15 C 1.35154 * 108.46844 * 359.82278 * 14 13 12 16 16 O 1.35459 * 123.87418 * 179.85662 * 15 14 13 17 17 C 1.43538 * 115.05382 * 344.47518 * 16 15 14 18 18 C 1.53252 * 109.18067 * 46.91136 * 17 16 15 19 19 C 1.46803 * 127.97375 * 179.88200 * 14 13 12 20 20 C 1.53194 * 109.31549 * 61.36447 * 6 5 4 21 21 N 1.46926 * 109.58537 * 239.72184 * 2 1 3 22 22 C 1.36935 * 120.63603 * 6.46146 * 21 2 1 23 23 H 1.08002 * 119.99660 * 330.34114 * 22 21 2 24 24 C 1.38810 * 120.00726 * 150.33821 * 22 21 2 25 25 N 1.31624 * 119.99291 * 344.65073 * 24 22 21 26 26 Si 1.86796 * 120.00435 * 164.64705 * 24 22 21 27 27 H 1.48498 * 109.46975 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.47091 * 119.99903 * 26 24 22 29 29 H 1.48491 * 109.47212 * 240.00025 * 26 24 22 30 30 H 1.08993 * 109.47152 * 299.99270 * 1 2 3 31 31 H 1.08996 * 109.47418 * 59.99956 * 1 2 3 32 32 H 1.09007 * 109.46915 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.49969 * 294.51928 * 4 2 1 34 34 H 1.09001 * 109.49441 * 54.61989 * 4 2 1 35 35 H 1.09001 * 109.45767 * 58.65870 * 5 4 2 36 36 H 1.08998 * 109.45857 * 178.61761 * 5 4 2 37 37 H 0.96998 * 120.00464 * 335.00627 * 8 6 5 38 38 H 1.08000 * 125.89905 * 359.96358 * 12 11 9 39 39 H 1.08999 * 109.51670 * 166.81996 * 17 16 15 40 40 H 1.08995 * 109.52121 * 286.99999 * 17 16 15 41 41 H 1.09008 * 109.50924 * 55.82172 * 18 17 16 42 42 H 1.08999 * 109.50732 * 175.90490 * 18 17 16 43 43 H 1.08998 * 109.75415 * 43.27025 * 19 14 13 44 44 H 1.08996 * 109.79961 * 282.53684 * 19 14 13 45 45 H 1.09000 * 109.58713 * 65.15122 * 20 6 5 46 46 H 1.08999 * 109.58856 * 185.43562 * 20 6 5 47 47 H 0.97004 * 119.99680 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7278 1.2463 5 6 3.5679 -0.8433 1.1728 6 6 3.9604 -1.6607 -0.0600 7 1 3.5038 -2.6488 -0.0020 8 7 5.4181 -1.7973 -0.1124 9 6 5.9745 -2.8392 -0.7614 10 8 5.2661 -3.6662 -1.3043 11 6 7.4363 -2.9765 -0.8134 12 6 8.3876 -2.0975 -0.2389 13 7 9.5802 -2.5615 -0.4981 14 7 9.4606 -3.7326 -1.2439 15 6 8.1469 -3.9847 -1.4373 16 8 7.6764 -5.0504 -2.1286 17 6 8.6472 -5.7218 -2.9454 18 6 9.9233 -5.9481 -2.1275 19 6 10.5357 -4.5896 -1.7585 20 6 3.4685 -0.9434 -1.3212 21 7 2.0225 -0.6979 -1.1954 22 6 1.1534 -1.1128 -2.1689 23 1 0.1395 -1.3794 -1.9096 24 6 1.5755 -1.1906 -3.4890 25 7 2.6877 -0.5928 -3.8605 26 14 0.5651 -2.1436 -4.7381 27 1 -0.6318 -2.7174 -4.0723 28 1 0.1349 -1.2303 -5.8272 29 1 1.3885 -3.2400 -5.3079 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7639 -0.1655 2.1371 34 1 1.6051 -1.7246 1.2920 35 1 4.0045 0.1529 1.1021 36 1 3.9382 -1.3390 2.0701 37 1 5.9829 -1.1379 0.3202 38 1 8.1647 -1.2001 0.3191 39 1 8.2478 -6.6825 -3.2703 40 1 8.8770 -5.1084 -3.8165 41 1 9.6800 -6.4970 -1.2176 42 1 10.6375 -6.5216 -2.7184 43 1 11.2979 -4.7251 -0.9912 44 1 10.9802 -4.1333 -2.6429 45 1 3.9919 0.0066 -1.4289 46 1 3.6599 -1.5671 -2.1944 47 1 2.9825 -0.6468 -4.7831 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071648385.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:15 Heat of formation + Delta-G solvation = 1.339666 kcal Electronic energy + Delta-G solvation = -29771.611212 eV Core-core repulsion = 25762.934232 eV Total energy + Delta-G solvation = -4008.676980 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.96135 -40.63636 -39.66808 -38.99402 -35.89072 -35.65729 -34.60008 -32.50814 -31.85146 -31.69229 -30.54490 -27.75614 -27.35661 -26.72701 -24.79012 -23.94433 -23.43498 -22.19532 -21.29780 -20.93398 -20.73403 -19.32302 -18.29483 -18.00692 -17.58304 -17.18352 -16.80332 -16.30236 -16.07350 -15.85524 -15.85235 -15.48860 -15.37922 -15.18090 -14.93622 -14.73619 -14.42538 -14.34715 -14.01591 -13.45069 -13.44779 -13.04778 -12.74505 -12.71741 -12.68671 -12.61289 -12.52205 -12.24042 -12.19769 -12.07789 -11.94140 -11.83909 -11.60339 -11.34211 -11.08956 -10.78000 -10.52487 -10.30948 -10.01960 -9.50172 -8.58136 -7.82639 -5.28780 0.44701 1.06364 1.10722 1.39854 1.44605 1.52610 1.98964 2.33864 2.53252 2.54119 3.13362 3.34250 3.46221 3.64570 3.74317 3.87672 3.96266 3.99762 4.09160 4.15374 4.22295 4.28304 4.35111 4.45241 4.48164 4.53381 4.59288 4.69438 4.76217 4.85069 4.87283 4.94439 5.04667 5.06168 5.12031 5.23767 5.35663 5.37606 5.43623 5.57790 5.59690 5.66103 5.73629 5.87432 6.14465 6.41150 6.44758 6.80563 7.18411 7.50128 7.93157 8.43289 9.22657 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013508 B = 0.003515 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.358569 B = 7964.584434 C = 9452.520558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.153 3.847 3 H 0.023 0.977 4 C -0.118 4.118 5 C -0.106 4.106 6 C 0.135 3.865 7 H 0.047 0.953 8 N -0.703 5.703 9 C 0.587 3.413 10 O -0.595 6.595 11 C -0.336 4.336 12 C 0.115 3.885 13 N -0.296 5.296 14 N -0.393 5.393 15 C 0.327 3.673 16 O -0.298 6.298 17 C 0.025 3.975 18 C -0.162 4.162 19 C 0.115 3.885 20 C 0.181 3.819 21 N -0.604 5.604 22 C -0.248 4.248 23 H 0.075 0.925 24 C -0.055 4.055 25 N -0.934 5.934 26 Si 0.955 3.045 27 H -0.261 1.261 28 H -0.287 1.287 29 H -0.303 1.303 30 H 0.079 0.921 31 H 0.037 0.963 32 H 0.044 0.956 33 H 0.097 0.903 34 H 0.050 0.950 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.412 0.588 38 H 0.232 0.768 39 H 0.141 0.859 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.156 0.844 43 H 0.126 0.874 44 H 0.110 0.890 45 H -0.001 1.001 46 H 0.036 0.964 47 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.207 -6.565 10.011 21.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.048 3.952 3 H 0.041 0.959 4 C -0.157 4.157 5 C -0.144 4.144 6 C 0.029 3.971 7 H 0.065 0.935 8 N -0.355 5.355 9 C 0.376 3.624 10 O -0.477 6.477 11 C -0.351 4.351 12 C -0.073 4.073 13 N -0.117 5.117 14 N -0.187 5.187 15 C 0.152 3.848 16 O -0.203 6.203 17 C -0.049 4.049 18 C -0.200 4.200 19 C -0.004 4.004 20 C 0.054 3.946 21 N -0.328 5.328 22 C -0.379 4.379 23 H 0.092 0.908 24 C -0.250 4.250 25 N -0.581 5.581 26 Si 0.784 3.216 27 H -0.185 1.185 28 H -0.214 1.214 29 H -0.230 1.230 30 H 0.098 0.902 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.116 0.884 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.248 0.752 38 H 0.248 0.752 39 H 0.159 0.841 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.174 0.826 43 H 0.144 0.856 44 H 0.128 0.872 45 H 0.017 0.983 46 H 0.055 0.945 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 18.846 -7.199 9.527 22.311 hybrid contribution -0.981 -0.399 -1.497 1.834 sum 17.866 -7.597 8.029 21.009 Atomic orbital electron populations 1.21736 0.94824 1.01063 1.01055 1.20815 0.94244 0.93456 0.86704 0.95914 1.21956 0.94668 1.00795 0.98322 1.21648 0.96988 1.00067 0.95734 1.21455 0.79150 0.98898 0.97627 0.93518 1.45538 1.07378 1.26736 1.55811 1.17423 0.86638 0.80964 0.77340 1.90800 1.64467 1.44580 1.47859 1.19228 0.93417 1.01767 1.20647 1.24462 0.87273 0.98926 0.96637 1.76972 1.22152 0.97409 1.15176 1.49344 1.04221 1.21534 1.43621 1.19906 0.85001 0.88091 0.91811 1.86748 1.37789 1.38489 1.57250 1.23713 0.89195 0.99478 0.92474 1.22682 0.98132 0.96327 1.02890 1.22523 0.87720 0.88195 1.01936 1.20785 0.83665 0.95195 0.94927 1.44391 1.02491 1.65758 1.20206 1.19509 0.95455 1.36283 0.86628 0.90787 1.25808 0.99097 1.01014 0.99032 1.70180 1.25821 1.45926 1.16130 0.85376 0.78594 0.78092 0.79563 1.18529 1.21361 1.23027 0.90187 0.94363 0.93687 0.88437 0.93117 0.90509 0.89551 0.75157 0.75211 0.84138 0.90158 0.89599 0.82596 0.85554 0.87205 0.98269 0.94515 0.94809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.80 7.95 71.98 0.57 -4.22 16 2 C 0.15 6.27 3.49 44.97 0.16 6.42 16 3 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 4 C -0.12 -3.80 5.37 30.67 0.16 -3.64 16 5 C -0.11 -3.27 5.35 30.62 0.16 -3.11 16 6 C 0.14 5.61 2.61 45.07 0.12 5.73 16 7 H 0.05 2.27 7.58 -2.38 -0.02 2.26 16 8 N -0.70 -25.10 5.07 -445.90 -2.26 -27.36 16 9 C 0.59 24.53 7.76 86.52 0.67 25.20 16 10 O -0.60 -31.73 16.19 -2.00 -0.03 -31.77 16 11 C -0.34 -11.34 6.14 -20.15 -0.12 -11.46 16 12 C 0.12 2.87 11.51 85.73 0.99 3.85 16 13 N -0.30 -7.38 12.54 -55.94 -0.70 -8.08 16 14 N -0.39 -9.32 4.04 -456.66 -1.85 -11.16 16 15 C 0.33 10.30 7.50 84.18 0.63 10.93 16 16 O -0.30 -9.51 10.18 -85.33 -0.87 -10.37 16 17 C 0.03 0.43 7.02 72.07 0.51 0.94 16 18 C -0.16 -1.47 6.17 30.85 0.19 -1.28 16 19 C 0.11 1.38 7.41 86.50 0.64 2.02 16 20 C 0.18 9.55 4.87 86.31 0.42 9.97 16 21 N -0.60 -31.82 3.00 -674.50 -2.02 -33.84 16 22 C -0.25 -14.42 8.58 84.03 0.72 -13.70 16 23 H 0.07 4.14 6.23 -2.91 -0.02 4.12 16 24 C -0.05 -3.31 4.95 84.86 0.42 -2.89 16 25 N -0.93 -60.17 11.23 21.65 0.24 -59.93 16 26 Si 0.95 49.13 29.58 68.60 2.03 51.16 16 27 H -0.26 -12.58 7.11 99.48 0.71 -11.88 16 28 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16 29 H -0.30 -16.09 7.11 99.48 0.71 -15.39 16 30 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.04 1.56 7.65 -2.39 -0.02 1.54 16 32 H 0.04 1.72 7.42 -2.38 -0.02 1.70 16 33 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.41 10.69 7.56 -92.71 -0.70 9.99 16 38 H 0.23 3.58 7.51 -2.91 -0.02 3.55 16 39 H 0.14 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 42 H 0.16 0.06 8.14 -2.39 -0.02 0.04 16 43 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 46 H 0.04 2.34 6.16 -2.39 -0.01 2.33 16 47 H 0.24 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -91.21 374.07 1.07 -90.14 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 0.29 Total: 16.44 kcal Atomic # 6 Polarization: 18.53 SS G_CDS: 6.24 Total: 24.77 kcal Atomic # 7 Polarization: -133.79 SS G_CDS: -6.59 Total: -140.37 kcal Atomic # 8 Polarization: -41.24 SS G_CDS: -0.90 Total: -42.14 kcal Atomic # 14 Polarization: 49.13 SS G_CDS: 2.03 Total: 51.16 kcal Total: -91.21 1.07 -90.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071648385.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.483 kcal (2) G-P(sol) polarization free energy of solvation -91.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds