Wall clock time and date at job start Tue Mar 31 2020 19:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.58269 * 2 1 4 4 C 1.53199 * 109.58989 * 239.57710 * 2 1 3 5 5 C 1.53038 * 109.31312 * 185.57400 * 4 2 1 6 6 C 1.53040 * 109.54009 * 61.36588 * 5 4 2 7 7 H 1.08995 * 109.52607 * 58.59837 * 6 5 4 8 8 N 1.46499 * 109.49694 * 178.68285 * 6 5 4 9 9 C 1.34775 * 119.99805 * 204.83499 * 8 6 5 10 10 O 1.21670 * 120.00009 * 0.02562 * 9 8 6 11 11 C 1.46917 * 120.00067 * 180.02562 * 9 8 6 12 12 C 1.41699 * 126.56317 * 359.97201 * 11 9 8 13 13 N 1.30560 * 108.19493 * 180.27904 * 12 11 9 14 14 N 1.39359 * 109.06169 * 359.54215 * 13 12 11 15 15 C 1.35153 * 108.46101 * 0.51938 * 14 13 12 16 16 O 1.35457 * 123.87038 * 179.61621 * 15 14 13 17 17 C 1.43537 * 115.05212 * 344.46642 * 16 15 14 18 18 C 1.53250 * 109.18181 * 46.92112 * 17 16 15 19 19 C 1.46789 * 127.97858 * 180.32122 * 14 13 12 20 20 C 1.53194 * 109.30798 * 298.63459 * 6 5 4 21 21 N 1.46919 * 109.59071 * 120.28306 * 2 1 3 22 22 C 1.36939 * 120.63033 * 353.37708 * 21 2 1 23 23 H 1.08001 * 119.99822 * 29.53492 * 22 21 2 24 24 C 1.38811 * 119.99909 * 209.53457 * 22 21 2 25 25 N 1.31618 * 120.00395 * 15.61663 * 24 22 21 26 26 Si 1.86803 * 119.99823 * 195.61354 * 24 22 21 27 27 H 1.48503 * 109.47078 * 94.72146 * 26 24 22 28 28 H 1.48492 * 109.47132 * 214.72170 * 26 24 22 29 29 H 1.48497 * 109.47013 * 334.72695 * 26 24 22 30 30 H 1.09002 * 109.47337 * 299.71145 * 1 2 3 31 31 H 1.08997 * 109.47366 * 59.72102 * 1 2 3 32 32 H 1.09007 * 109.46942 * 179.71429 * 1 2 3 33 33 H 1.08995 * 109.49116 * 305.52720 * 4 2 1 34 34 H 1.09002 * 109.49554 * 65.61675 * 4 2 1 35 35 H 1.08997 * 109.45821 * 301.34022 * 5 4 2 36 36 H 1.08999 * 109.45834 * 181.38639 * 5 4 2 37 37 H 0.96992 * 120.00232 * 24.83965 * 8 6 5 38 38 H 1.07996 * 125.90220 * 0.02562 * 12 11 9 39 39 H 1.09005 * 109.51859 * 166.83001 * 17 16 15 40 40 H 1.08993 * 109.52268 * 287.00532 * 17 16 15 41 41 H 1.09001 * 109.51046 * 55.81587 * 18 17 16 42 42 H 1.08999 * 109.50779 * 175.95116 * 18 17 16 43 43 H 1.09004 * 109.76013 * 43.56389 * 19 14 13 44 44 H 1.09000 * 109.80600 * 282.83359 * 19 14 13 45 45 H 1.08999 * 109.58508 * 174.42252 * 20 6 5 46 46 H 1.08997 * 109.58807 * 294.84413 * 20 6 5 47 47 H 0.97003 * 120.00189 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7309 -1.2446 5 6 3.5675 -0.8492 -1.1691 6 6 3.9570 -1.6655 0.0654 7 1 3.4990 -2.6529 0.0087 8 7 5.4144 -1.8049 0.1196 9 6 5.9679 -2.8451 0.7738 10 8 5.2573 -3.6686 1.3190 11 6 7.4294 -2.9846 0.8286 12 6 8.3830 -2.1132 0.2462 13 7 9.5743 -2.5782 0.5093 14 7 9.4519 -3.7414 1.2669 15 6 8.1374 -3.9917 1.4574 16 8 7.6640 -5.0557 2.1491 17 6 8.6184 -6.1020 2.3831 18 6 9.9269 -5.4859 2.8900 19 6 10.5248 -4.5941 1.7927 20 6 3.4651 -0.9452 1.3248 21 7 2.0226 -0.6980 1.1953 22 6 1.1538 -1.1100 2.1703 23 1 0.1383 -1.3726 1.9129 24 6 1.5784 -1.1901 3.4895 25 7 2.6909 -0.5925 3.8603 26 14 0.5706 -2.1460 4.7386 27 1 1.1015 -3.5285 4.8492 28 1 0.6561 -1.4756 6.0608 29 1 -0.8468 -2.1940 4.2985 30 1 -0.3634 0.5093 0.8926 31 1 -0.3634 0.5181 -0.8874 32 1 -0.3633 -1.0277 -0.0051 33 1 1.6030 -1.7268 -1.2892 34 1 1.7659 -0.1694 -2.1367 35 1 4.0060 0.1462 -1.0996 36 1 3.9379 -1.3471 -2.0653 37 1 5.9809 -1.1486 -0.3153 38 1 8.1624 -1.2211 -0.3210 39 1 8.2269 -6.7916 3.1309 40 1 8.8051 -6.6393 1.4533 41 1 9.7268 -4.8860 3.7778 42 1 10.6312 -6.2800 3.1376 43 1 11.3163 -3.9734 2.2129 44 1 10.9288 -5.2147 0.9929 45 1 3.6519 -1.5689 2.1989 46 1 3.9903 0.0039 1.4316 47 1 2.9873 -0.6482 4.7822 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071648386.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:19 Heat of formation + Delta-G solvation = 30.798954 kcal Electronic energy + Delta-G solvation = -29776.082420 eV Core-core repulsion = 25768.682890 eV Total energy + Delta-G solvation = -4007.399529 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.96035 -39.13887 -38.58508 -37.31768 -34.87896 -34.15233 -32.68863 -31.29689 -30.64128 -29.80729 -29.30680 -26.65998 -25.91830 -24.92393 -23.68921 -22.45442 -22.06603 -20.73791 -19.93762 -19.77693 -19.21227 -18.18921 -16.89764 -16.59378 -16.25427 -15.65997 -15.46134 -15.13905 -14.97618 -14.77445 -14.57028 -13.91079 -13.76821 -13.65738 -13.46498 -13.27184 -13.20024 -12.81545 -12.55187 -12.24494 -12.06967 -11.80104 -11.72087 -11.49875 -11.33050 -11.01581 -10.87935 -10.77535 -10.63524 -10.36997 -10.28993 -10.15001 -9.85476 -9.60095 -9.37218 -9.31036 -9.15807 -8.48391 -8.30887 -8.20310 -6.48911 -5.62721 -3.07278 1.57696 1.94888 2.21988 2.84613 3.49960 3.56599 3.57826 3.69358 3.88237 4.00004 4.03515 4.39180 4.43920 4.63737 4.74004 4.78123 4.91249 5.09060 5.14168 5.29841 5.39979 5.47329 5.49621 5.52375 5.66374 5.71708 5.81490 5.94849 6.09583 6.23494 6.33838 6.37667 6.45135 6.49816 6.56732 6.65579 6.74329 6.89462 7.11089 7.14456 7.18658 7.23509 7.43649 7.49228 7.89790 7.97820 8.21575 8.62314 8.97647 9.36347 10.00866 10.56387 11.45150 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013425 B = 0.003524 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.130195 B = 7944.074034 C = 9418.434946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.121 3.879 7 H 0.081 0.919 8 N -0.719 5.719 9 C 0.592 3.408 10 O -0.533 6.533 11 C -0.297 4.297 12 C 0.103 3.897 13 N -0.290 5.290 14 N -0.401 5.401 15 C 0.334 3.666 16 O -0.259 6.259 17 C 0.043 3.957 18 C -0.178 4.178 19 C 0.130 3.870 20 C 0.169 3.831 21 N -0.584 5.584 22 C -0.252 4.252 23 H 0.070 0.930 24 C 0.007 3.993 25 N -0.899 5.899 26 Si 0.898 3.102 27 H -0.287 1.287 28 H -0.293 1.293 29 H -0.279 1.279 30 H 0.061 0.939 31 H 0.037 0.963 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.389 0.611 38 H 0.196 0.804 39 H 0.123 0.877 40 H 0.074 0.926 41 H 0.092 0.908 42 H 0.112 0.888 43 H 0.104 0.896 44 H 0.090 0.910 45 H 0.093 0.907 46 H 0.016 0.984 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.621 -6.984 -8.121 19.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.059 3.941 3 H 0.042 0.958 4 C -0.166 4.166 5 C -0.154 4.154 6 C 0.015 3.985 7 H 0.099 0.901 8 N -0.369 5.369 9 C 0.378 3.622 10 O -0.410 6.410 11 C -0.312 4.312 12 C -0.085 4.085 13 N -0.111 5.111 14 N -0.196 5.196 15 C 0.162 3.838 16 O -0.163 6.163 17 C -0.033 4.033 18 C -0.217 4.217 19 C 0.009 3.991 20 C 0.042 3.958 21 N -0.308 5.308 22 C -0.382 4.382 23 H 0.087 0.913 24 C -0.192 4.192 25 N -0.543 5.543 26 Si 0.728 3.272 27 H -0.214 1.214 28 H -0.219 1.219 29 H -0.204 1.204 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.222 0.778 38 H 0.213 0.787 39 H 0.141 0.859 40 H 0.093 0.907 41 H 0.110 0.890 42 H 0.130 0.870 43 H 0.122 0.878 44 H 0.108 0.892 45 H 0.112 0.888 46 H 0.034 0.966 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 17.223 -7.592 -7.510 20.265 hybrid contribution -0.570 -0.364 0.709 0.980 sum 16.654 -7.955 -6.801 19.669 Atomic orbital electron populations 1.21803 0.96121 1.01329 1.00128 1.20481 0.92966 0.93551 0.87152 0.95813 1.22042 0.94469 1.01251 0.98807 1.21676 0.97241 0.99655 0.96837 1.21907 0.77872 1.00741 0.97942 0.90114 1.45768 1.08210 1.26869 1.56044 1.16859 0.85240 0.81541 0.78553 1.90849 1.62566 1.42395 1.45159 1.19313 0.94906 1.01255 1.15694 1.24003 0.88519 0.98660 0.97357 1.77016 1.22210 0.97234 1.14681 1.48941 1.04236 1.21987 1.44446 1.19753 0.83652 0.89289 0.91112 1.86811 1.35683 1.25384 1.68414 1.23238 0.88562 0.88761 1.02706 1.22690 0.98765 1.01076 0.99149 1.21951 0.88669 0.91807 0.96653 1.21082 0.83321 0.96846 0.94581 1.44036 1.02737 1.64859 1.19119 1.19145 0.94932 1.38065 0.86036 0.91280 1.25063 0.97769 0.99351 0.97011 1.70010 1.23953 1.43716 1.16625 0.86336 0.79705 0.80127 0.80987 1.21397 1.21938 1.20419 0.92031 0.94428 0.92849 0.92116 0.92801 0.92312 0.93102 0.77833 0.78688 0.85892 0.90745 0.88980 0.87010 0.87798 0.89195 0.88843 0.96557 0.93836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 7.95 37.15 0.30 -2.34 16 2 C 0.17 3.48 3.50 -67.60 -0.24 3.24 16 3 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 4 C -0.13 -2.21 5.37 -26.61 -0.14 -2.35 16 5 C -0.12 -1.94 5.35 -26.69 -0.14 -2.08 16 6 C 0.12 2.47 2.60 -67.81 -0.18 2.29 16 7 H 0.08 1.88 7.58 -51.93 -0.39 1.49 16 8 N -0.72 -12.66 5.07 -54.92 -0.28 -12.94 16 9 C 0.59 11.78 7.76 -12.75 -0.10 11.68 16 10 O -0.53 -13.19 16.19 2.87 0.05 -13.14 16 11 C -0.30 -4.91 6.14 -105.07 -0.64 -5.55 16 12 C 0.10 1.34 11.51 -16.77 -0.19 1.15 16 13 N -0.29 -3.86 12.54 30.97 0.39 -3.47 16 14 N -0.40 -5.01 4.04 -60.47 -0.24 -5.26 16 15 C 0.33 5.18 7.50 -16.09 -0.12 5.06 16 16 O -0.26 -3.95 10.18 -20.41 -0.21 -4.16 16 17 C 0.04 0.37 7.01 37.29 0.26 0.63 16 18 C -0.18 -1.07 6.17 -26.33 -0.16 -1.23 16 19 C 0.13 0.95 7.41 -3.62 -0.03 0.93 16 20 C 0.17 4.25 4.86 -3.71 -0.02 4.23 16 21 N -0.58 -15.01 2.99 -164.78 -0.49 -15.50 16 22 C -0.25 -7.11 8.58 -15.06 -0.13 -7.24 16 23 H 0.07 1.90 6.23 -52.49 -0.33 1.57 16 24 C 0.01 0.21 4.94 -17.43 -0.09 0.12 16 25 N -0.90 -27.49 11.22 55.49 0.62 -26.87 16 26 Si 0.90 23.03 29.58 -169.99 -5.03 18.00 16 27 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 28 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 29 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 30 H 0.06 1.28 7.62 -51.93 -0.40 0.89 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.05 1.05 7.44 -51.92 -0.39 0.66 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.39 5.30 7.56 -40.82 -0.31 4.99 16 38 H 0.20 1.77 7.51 -52.49 -0.39 1.37 16 39 H 0.12 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.09 2.80 6.13 -51.93 -0.32 2.48 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 373.99 15.07 5.64 5.64 Total: -1.00 -37.90 373.99 -8.33 -46.24 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -7.15 Total: 2.94 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: -1.62 Total: 8.53 kcal Atomic # 7 Polarization: -64.03 SS G_CDS: 0.00 Total: -64.03 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.16 Total: -17.30 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.03 Total: 18.00 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -37.90 -8.33 -46.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071648386.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.038 kcal (2) G-P(sol) polarization free energy of solvation -37.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds