Wall clock time and date at job start Tue Mar 31 2020 19:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.58499 * 2 1 4 4 C 1.53191 * 109.58468 * 120.28244 * 2 1 3 5 5 C 1.53045 * 109.31190 * 174.42235 * 4 2 1 6 6 C 1.53035 * 109.53978 * 298.63884 * 5 4 2 7 7 H 1.09000 * 109.49914 * 181.34704 * 6 5 4 8 8 N 1.46501 * 109.49676 * 301.41346 * 6 5 4 9 9 C 1.34774 * 119.99917 * 204.94001 * 8 6 5 10 10 O 1.21680 * 120.00359 * 4.90421 * 9 8 6 11 11 C 1.46811 * 120.00092 * 184.91660 * 9 8 6 12 12 C 1.36356 * 125.84467 * 354.89723 * 11 9 8 13 13 C 1.41307 * 107.00817 * 179.97438 * 12 11 9 14 14 C 1.47391 * 126.46451 * 179.97438 * 13 12 11 15 15 N 1.34772 * 120.00567 * 179.72507 * 14 13 12 16 16 O 1.21613 * 119.99688 * 359.97438 * 14 13 12 17 17 C 1.38209 * 107.07506 * 0.22587 * 13 12 11 18 18 N 1.34259 * 108.39694 * 359.62958 * 17 13 12 19 19 C 1.46498 * 125.39417 * 180.18204 * 18 17 13 20 20 C 1.53192 * 109.34130 * 61.37815 * 6 5 4 21 21 N 1.46921 * 109.58626 * 239.57478 * 2 1 3 22 22 C 1.36932 * 120.63394 * 6.62468 * 21 2 1 23 23 H 1.07993 * 120.00028 * 328.79856 * 22 21 2 24 24 C 1.38818 * 120.00112 * 148.79583 * 22 21 2 25 25 N 1.31618 * 119.99753 * 343.61641 * 24 22 21 26 26 Si 1.86794 * 120.00060 * 163.61583 * 24 22 21 27 27 H 1.48501 * 109.47260 * 94.98563 * 26 24 22 28 28 H 1.48499 * 109.47229 * 214.98319 * 26 24 22 29 29 H 1.48500 * 109.47236 * 334.98379 * 26 24 22 30 30 H 1.08994 * 109.47113 * 299.71614 * 1 2 3 31 31 H 1.09004 * 109.46871 * 59.71642 * 1 2 3 32 32 H 1.08998 * 109.47090 * 179.71628 * 1 2 3 33 33 H 1.08997 * 109.49993 * 54.47605 * 4 2 1 34 34 H 1.08994 * 109.52689 * 294.39036 * 4 2 1 35 35 H 1.09000 * 109.46288 * 178.61232 * 5 4 2 36 36 H 1.09000 * 109.45589 * 58.65712 * 5 4 2 37 37 H 0.97003 * 120.00059 * 24.93401 * 8 6 5 38 38 H 1.07994 * 126.49754 * 0.02562 * 12 11 9 39 39 H 0.97006 * 119.99454 * 0.02562 * 15 14 13 40 40 H 0.96994 * 120.00410 * 179.97438 * 15 14 13 41 41 H 1.08004 * 125.80055 * 179.76833 * 17 13 12 42 42 H 1.09002 * 109.47266 * 266.62548 * 19 18 17 43 43 H 1.09001 * 109.47303 * 26.63117 * 19 18 17 44 44 H 1.09006 * 109.47293 * 146.63033 * 19 18 17 45 45 H 1.09000 * 109.58683 * 65.13751 * 20 6 5 46 46 H 1.09004 * 109.58935 * 185.56560 * 20 6 5 47 47 H 0.96999 * 120.00012 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7278 1.2464 5 6 3.5675 -0.8465 1.1713 6 6 3.9570 -1.6657 -0.0613 7 1 5.0412 -1.7701 -0.1011 8 7 3.3406 -2.9923 0.0185 9 6 3.8965 -4.0339 -0.6315 10 8 4.9573 -3.8935 -1.2107 11 6 3.2219 -5.3378 -0.6410 12 6 2.0867 -5.6546 0.0448 13 6 1.7891 -7.0043 -0.2496 14 6 0.6493 -7.7827 0.2673 15 7 0.4862 -9.0676 -0.1054 16 8 -0.1467 -7.2643 1.0266 17 6 2.7715 -7.4584 -1.1090 18 7 3.6271 -6.4509 -1.3447 19 6 4.8073 -6.5247 -2.2096 20 6 3.4657 -0.9488 -1.3229 21 7 2.0225 -0.7010 -1.1936 22 6 1.1538 -1.1154 -2.1676 23 1 0.1463 -1.4030 -1.9057 24 6 1.5681 -1.1656 -3.4915 25 7 2.6564 -0.5267 -3.8652 26 14 0.5809 -2.1400 -4.7427 27 1 -0.3638 -1.2330 -5.4427 28 1 1.5032 -2.7531 -5.7319 29 1 -0.1815 -3.2084 -4.0482 30 1 -0.3633 0.5094 0.8925 31 1 -0.3633 0.5183 -0.8875 32 1 -0.3633 -1.0276 -0.0051 33 1 1.6030 -1.7237 1.2935 34 1 1.7660 -0.1647 2.1373 35 1 3.9378 -1.3422 2.0686 36 1 4.0061 0.1488 1.0992 37 1 2.5324 -3.1211 0.5393 38 1 1.5217 -4.9982 0.6898 39 1 1.1194 -9.4801 -0.7137 40 1 -0.2637 -9.5800 0.2350 41 1 2.8383 -8.4538 -1.5227 42 1 5.6813 -6.7806 -1.6106 43 1 4.6524 -7.2889 -2.9713 44 1 4.9664 -5.5595 -2.6904 45 1 3.9910 0.0000 -1.4320 46 1 3.6529 -1.5749 -2.1953 47 1 2.9457 -0.5615 -4.7904 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071648682.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:32 Heat of formation + Delta-G solvation = -6.698291 kcal Electronic energy + Delta-G solvation = -30388.170909 eV Core-core repulsion = 26379.145378 eV Total energy + Delta-G solvation = -4009.025532 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.57529 -39.29685 -38.73562 -37.35328 -34.23161 -33.71315 -32.98467 -32.56904 -30.94972 -29.92045 -29.00743 -26.89622 -26.14632 -24.93858 -23.24944 -22.51535 -22.13738 -20.50440 -19.91524 -19.41688 -18.69178 -18.23267 -17.06610 -16.30229 -15.90797 -15.71639 -15.64890 -15.31397 -14.86163 -14.42078 -14.21095 -14.03520 -13.81718 -13.69085 -13.58592 -13.30268 -13.00868 -12.82020 -12.50554 -12.43125 -12.25589 -12.19714 -11.87343 -11.21599 -11.11165 -10.96446 -10.84089 -10.68820 -10.35220 -10.29828 -10.08003 -9.94091 -9.73018 -9.59701 -9.48272 -9.39772 -8.82273 -8.51308 -8.42741 -8.18811 -6.54811 -5.73602 -3.17399 1.56282 1.90714 2.62249 3.38367 3.45975 3.49163 3.49780 3.53020 3.74686 3.90181 4.52966 4.66396 4.69772 5.00951 5.16762 5.20652 5.23743 5.34005 5.38325 5.46486 5.53856 5.61531 5.62923 5.83955 6.02325 6.04098 6.14398 6.18997 6.36926 6.40404 6.47717 6.51552 6.55552 6.65569 6.70004 6.74862 6.82031 6.89989 7.05376 7.10377 7.17414 7.34521 7.36943 7.63825 7.88405 8.05919 8.33512 8.51977 8.69597 9.26028 9.90356 10.47747 11.34698 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009705 B = 0.004597 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2884.464193 B = 6089.236074 C = 6407.010477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.166 3.834 3 H 0.025 0.975 4 C -0.132 4.132 5 C -0.118 4.118 6 C 0.120 3.880 7 H 0.078 0.922 8 N -0.685 5.685 9 C 0.588 3.412 10 O -0.557 6.557 11 C -0.038 4.038 12 C -0.078 4.078 13 C -0.238 4.238 14 C 0.596 3.404 15 N -0.858 5.858 16 O -0.547 6.547 17 C 0.054 3.946 18 N -0.395 5.395 19 C 0.064 3.936 20 C 0.165 3.835 21 N -0.582 5.582 22 C -0.247 4.247 23 H 0.067 0.933 24 C 0.008 3.992 25 N -0.899 5.899 26 Si 0.891 3.109 27 H -0.288 1.288 28 H -0.292 1.292 29 H -0.278 1.278 30 H 0.037 0.963 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.399 0.601 38 H 0.153 0.847 39 H 0.397 0.603 40 H 0.401 0.599 41 H 0.175 0.825 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.107 0.893 45 H 0.028 0.972 46 H 0.089 0.911 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.725 -14.017 7.523 16.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.059 3.941 3 H 0.042 0.958 4 C -0.171 4.171 5 C -0.156 4.156 6 C 0.014 3.986 7 H 0.096 0.904 8 N -0.334 5.334 9 C 0.374 3.626 10 O -0.437 6.437 11 C -0.150 4.150 12 C -0.104 4.104 13 C -0.248 4.248 14 C 0.384 3.616 15 N -0.421 5.421 16 O -0.424 6.424 17 C -0.088 4.088 18 N -0.065 5.065 19 C -0.076 4.076 20 C 0.038 3.962 21 N -0.305 5.305 22 C -0.376 4.376 23 H 0.085 0.915 24 C -0.191 4.191 25 N -0.543 5.543 26 Si 0.721 3.279 27 H -0.215 1.215 28 H -0.218 1.218 29 H -0.203 1.203 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.234 0.766 38 H 0.170 0.830 39 H 0.225 0.775 40 H 0.232 0.768 41 H 0.192 0.808 42 H 0.099 0.901 43 H 0.102 0.898 44 H 0.126 0.874 45 H 0.046 0.954 46 H 0.107 0.893 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.455 -13.304 7.185 15.510 hybrid contribution -0.843 -1.101 -0.887 1.646 sum 2.612 -14.405 6.299 15.938 Atomic orbital electron populations 1.21796 0.96063 1.01388 1.00113 1.20461 0.92962 0.93555 0.87078 0.95771 1.22082 0.95050 1.00843 0.99165 1.21688 0.97139 1.00116 0.96700 1.21839 0.97043 0.81204 0.98484 0.90393 1.45544 1.29402 1.08089 1.50362 1.16813 0.84185 0.82398 0.79201 1.90747 1.22576 1.84758 1.45669 1.19983 1.00328 0.89975 1.04714 1.21088 0.94587 0.94746 0.99943 1.19444 0.99951 0.96483 1.08903 1.17431 0.83787 0.81027 0.79400 1.43675 1.32688 1.13412 1.52351 1.90815 1.45095 1.70183 1.36347 1.22257 0.91870 0.93660 1.00968 1.43565 1.20740 1.08696 1.33545 1.22367 0.85353 1.06107 0.93796 1.21131 0.84082 0.96941 0.94006 1.44035 1.02550 1.64732 1.19175 1.19057 0.95648 1.37200 0.85726 0.91546 1.25057 0.97883 0.99193 0.96996 1.70012 1.25421 1.42546 1.16322 0.86445 0.79441 0.80324 0.81650 1.21514 1.21819 1.20346 0.94426 0.92095 0.92821 0.92570 0.92737 0.92892 0.90985 0.76561 0.82977 0.77530 0.76842 0.80831 0.90146 0.89840 0.87408 0.95442 0.89306 0.93834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 7.96 37.16 0.30 -2.23 16 2 C 0.17 3.29 3.50 -67.60 -0.24 3.05 16 3 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.13 5.21 -26.61 -0.14 -2.27 16 5 C -0.12 -1.86 5.59 -26.69 -0.15 -2.01 16 6 C 0.12 2.25 2.85 -67.81 -0.19 2.06 16 7 H 0.08 1.48 7.51 -51.93 -0.39 1.09 16 8 N -0.68 -12.39 4.90 -54.96 -0.27 -12.66 16 9 C 0.59 11.12 7.74 -12.80 -0.10 11.02 16 10 O -0.56 -11.69 14.36 5.21 0.07 -11.62 16 11 C -0.04 -0.63 6.82 -82.40 -0.56 -1.20 16 12 C -0.08 -1.25 10.10 -39.09 -0.39 -1.64 16 13 C -0.24 -3.28 6.13 -105.02 -0.64 -3.93 16 14 C 0.60 8.13 8.09 -12.54 -0.10 8.03 16 15 N -0.86 -7.10 8.86 30.42 0.27 -6.83 16 16 O -0.55 -9.79 17.76 5.27 0.09 -9.70 16 17 C 0.05 0.60 10.87 -16.50 -0.18 0.42 16 18 N -0.39 -5.35 3.12 -120.12 -0.38 -5.72 16 19 C 0.06 0.72 10.37 59.85 0.62 1.34 16 20 C 0.17 3.87 4.88 -3.67 -0.02 3.85 16 21 N -0.58 -13.78 2.89 -164.72 -0.48 -14.25 16 22 C -0.25 -6.53 8.53 -15.06 -0.13 -6.66 16 23 H 0.07 1.75 6.28 -52.49 -0.33 1.42 16 24 C 0.01 0.21 4.90 -17.43 -0.09 0.13 16 25 N -0.90 -26.23 11.40 55.49 0.63 -25.59 16 26 Si 0.89 22.17 29.58 -169.99 -5.03 17.14 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 28 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 29 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 1.24 7.68 -51.93 -0.40 0.84 16 32 H 0.05 1.02 7.39 -51.93 -0.38 0.63 16 33 H 0.06 0.91 6.40 -51.93 -0.33 0.57 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.40 6.71 5.62 -40.82 -0.23 6.48 16 38 H 0.15 2.37 7.39 -52.49 -0.39 1.98 16 39 H 0.40 1.97 7.74 -40.82 -0.32 1.65 16 40 H 0.40 2.78 8.93 -40.82 -0.36 2.42 16 41 H 0.17 1.03 7.44 -52.48 -0.39 0.64 16 42 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.08 0.63 8.12 -51.93 -0.42 0.21 16 44 H 0.11 1.54 6.59 -51.93 -0.34 1.20 16 45 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.09 2.45 6.29 -51.93 -0.33 2.12 16 47 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 376.40 15.07 5.67 5.67 Total: -1.00 -35.34 376.40 -8.13 -43.47 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -6.71 Total: 10.14 kcal Atomic # 6 Polarization: 11.97 SS G_CDS: -2.01 Total: 9.95 kcal Atomic # 7 Polarization: -64.84 SS G_CDS: -0.22 Total: -65.06 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: 0.17 Total: -21.31 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.03 Total: 17.14 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.34 -8.13 -43.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071648682.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.769 kcal (2) G-P(sol) polarization free energy of solvation -35.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds