Wall clock time and date at job start Tue Mar 31 2020 19:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.58499 * 2 1 4 4 C 1.53191 * 109.58468 * 120.28244 * 2 1 3 5 5 C 1.53045 * 109.31190 * 174.42235 * 4 2 1 6 6 C 1.53035 * 109.53978 * 298.63884 * 5 4 2 7 7 H 1.09000 * 109.49914 * 181.34704 * 6 5 4 8 8 N 1.46501 * 109.49676 * 301.41346 * 6 5 4 9 9 C 1.34774 * 119.99917 * 204.94001 * 8 6 5 10 10 O 1.21680 * 120.00359 * 4.90421 * 9 8 6 11 11 C 1.46811 * 120.00092 * 184.91660 * 9 8 6 12 12 C 1.36356 * 125.84467 * 354.89723 * 11 9 8 13 13 C 1.41307 * 107.00817 * 179.97438 * 12 11 9 14 14 C 1.47391 * 126.46451 * 179.97438 * 13 12 11 15 15 N 1.34772 * 120.00567 * 179.72507 * 14 13 12 16 16 O 1.21613 * 119.99688 * 359.97438 * 14 13 12 17 17 C 1.38209 * 107.07506 * 0.22587 * 13 12 11 18 18 N 1.34259 * 108.39694 * 359.62958 * 17 13 12 19 19 C 1.46498 * 125.39417 * 180.18204 * 18 17 13 20 20 C 1.53192 * 109.34130 * 61.37815 * 6 5 4 21 21 N 1.46921 * 109.58626 * 239.57478 * 2 1 3 22 22 C 1.36932 * 120.63394 * 6.62468 * 21 2 1 23 23 H 1.07993 * 120.00028 * 328.79856 * 22 21 2 24 24 C 1.38818 * 120.00112 * 148.79583 * 22 21 2 25 25 N 1.31618 * 119.99753 * 343.61641 * 24 22 21 26 26 Si 1.86794 * 120.00060 * 163.61583 * 24 22 21 27 27 H 1.48501 * 109.47260 * 94.98563 * 26 24 22 28 28 H 1.48499 * 109.47229 * 214.98319 * 26 24 22 29 29 H 1.48500 * 109.47236 * 334.98379 * 26 24 22 30 30 H 1.08994 * 109.47113 * 299.71614 * 1 2 3 31 31 H 1.09004 * 109.46871 * 59.71642 * 1 2 3 32 32 H 1.08998 * 109.47090 * 179.71628 * 1 2 3 33 33 H 1.08997 * 109.49993 * 54.47605 * 4 2 1 34 34 H 1.08994 * 109.52689 * 294.39036 * 4 2 1 35 35 H 1.09000 * 109.46288 * 178.61232 * 5 4 2 36 36 H 1.09000 * 109.45589 * 58.65712 * 5 4 2 37 37 H 0.97003 * 120.00059 * 24.93401 * 8 6 5 38 38 H 1.07994 * 126.49754 * 0.02562 * 12 11 9 39 39 H 0.97006 * 119.99454 * 0.02562 * 15 14 13 40 40 H 0.96994 * 120.00410 * 179.97438 * 15 14 13 41 41 H 1.08004 * 125.80055 * 179.76833 * 17 13 12 42 42 H 1.09002 * 109.47266 * 266.62548 * 19 18 17 43 43 H 1.09001 * 109.47303 * 26.63117 * 19 18 17 44 44 H 1.09006 * 109.47293 * 146.63033 * 19 18 17 45 45 H 1.09000 * 109.58683 * 65.13751 * 20 6 5 46 46 H 1.09004 * 109.58935 * 185.56560 * 20 6 5 47 47 H 0.96999 * 120.00012 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7278 1.2464 5 6 3.5675 -0.8465 1.1713 6 6 3.9570 -1.6657 -0.0613 7 1 5.0412 -1.7701 -0.1011 8 7 3.3406 -2.9923 0.0185 9 6 3.8965 -4.0339 -0.6315 10 8 4.9573 -3.8935 -1.2107 11 6 3.2219 -5.3378 -0.6410 12 6 2.0867 -5.6546 0.0448 13 6 1.7891 -7.0043 -0.2496 14 6 0.6493 -7.7827 0.2673 15 7 0.4862 -9.0676 -0.1054 16 8 -0.1467 -7.2643 1.0266 17 6 2.7715 -7.4584 -1.1090 18 7 3.6271 -6.4509 -1.3447 19 6 4.8073 -6.5247 -2.2096 20 6 3.4657 -0.9488 -1.3229 21 7 2.0225 -0.7010 -1.1936 22 6 1.1538 -1.1154 -2.1676 23 1 0.1463 -1.4030 -1.9057 24 6 1.5681 -1.1656 -3.4915 25 7 2.6564 -0.5267 -3.8652 26 14 0.5809 -2.1400 -4.7427 27 1 -0.3638 -1.2330 -5.4427 28 1 1.5032 -2.7531 -5.7319 29 1 -0.1815 -3.2084 -4.0482 30 1 -0.3633 0.5094 0.8925 31 1 -0.3633 0.5183 -0.8875 32 1 -0.3633 -1.0276 -0.0051 33 1 1.6030 -1.7237 1.2935 34 1 1.7660 -0.1647 2.1373 35 1 3.9378 -1.3422 2.0686 36 1 4.0061 0.1488 1.0992 37 1 2.5324 -3.1211 0.5393 38 1 1.5217 -4.9982 0.6898 39 1 1.1194 -9.4801 -0.7137 40 1 -0.2637 -9.5800 0.2350 41 1 2.8383 -8.4538 -1.5227 42 1 5.6813 -6.7806 -1.6106 43 1 4.6524 -7.2889 -2.9713 44 1 4.9664 -5.5595 -2.6904 45 1 3.9910 0.0000 -1.4320 46 1 3.6529 -1.5749 -2.1953 47 1 2.9457 -0.5615 -4.7904 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071648682.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:31 Heat of formation + Delta-G solvation = -33.961148 kcal Electronic energy + Delta-G solvation = -30389.353116 eV Core-core repulsion = 26379.145378 eV Total energy + Delta-G solvation = -4010.207738 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.66775 -40.73456 -39.85508 -38.91435 -35.84984 -34.66932 -34.57246 -33.86108 -32.37277 -31.77543 -30.20999 -27.88709 -27.78689 -26.74232 -24.46640 -23.92414 -23.54987 -22.08601 -21.13290 -20.54736 -20.28261 -19.31486 -18.26115 -17.96051 -17.18489 -16.99033 -16.82864 -16.67801 -16.36510 -15.85646 -15.62106 -15.51536 -15.29436 -15.11184 -14.79196 -14.64091 -14.42004 -14.38758 -13.99117 -13.68930 -13.45782 -13.24882 -13.15575 -12.97410 -12.88768 -12.63719 -12.55251 -12.43833 -12.14203 -12.09066 -11.58523 -11.23521 -11.19441 -11.08031 -10.96406 -10.60596 -10.53233 -10.02802 -9.89776 -9.34265 -8.54372 -7.83283 -5.28328 0.47325 0.78572 1.37372 1.39634 1.48572 1.58006 2.24353 2.43562 2.49264 2.62572 2.80517 3.32053 3.63272 3.74658 3.78337 3.91734 4.03684 4.10334 4.18172 4.21028 4.30757 4.38423 4.48413 4.64268 4.70357 4.73448 4.75077 4.81802 4.95657 4.97526 5.03755 5.08998 5.11758 5.26281 5.31840 5.43613 5.55853 5.59659 5.66480 5.67949 5.72743 5.75030 5.99399 6.12490 6.44953 6.59830 6.62397 7.19135 7.26095 7.47244 7.92524 8.44332 9.21976 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009705 B = 0.004597 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2884.464193 B = 6089.236074 C = 6407.010477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.155 3.845 3 H 0.017 0.983 4 C -0.122 4.122 5 C -0.110 4.110 6 C 0.130 3.870 7 H 0.072 0.928 8 N -0.682 5.682 9 C 0.580 3.420 10 O -0.588 6.588 11 C -0.076 4.076 12 C -0.085 4.085 13 C -0.264 4.264 14 C 0.595 3.405 15 N -0.829 5.829 16 O -0.601 6.601 17 C 0.097 3.903 18 N -0.400 5.400 19 C 0.063 3.937 20 C 0.176 3.824 21 N -0.594 5.594 22 C -0.235 4.235 23 H 0.068 0.932 24 C -0.049 4.049 25 N -0.933 5.933 26 Si 0.945 3.055 27 H -0.285 1.285 28 H -0.299 1.299 29 H -0.273 1.273 30 H 0.075 0.925 31 H 0.035 0.965 32 H 0.047 0.953 33 H 0.057 0.943 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.405 0.595 38 H 0.144 0.856 39 H 0.417 0.583 40 H 0.411 0.589 41 H 0.236 0.764 42 H 0.093 0.907 43 H 0.128 0.872 44 H 0.068 0.932 45 H 0.002 0.998 46 H 0.041 0.959 47 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.027 -16.849 8.892 19.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.050 3.950 3 H 0.035 0.965 4 C -0.160 4.160 5 C -0.148 4.148 6 C 0.024 3.976 7 H 0.090 0.910 8 N -0.332 5.332 9 C 0.368 3.632 10 O -0.471 6.471 11 C -0.187 4.187 12 C -0.111 4.111 13 C -0.273 4.273 14 C 0.382 3.618 15 N -0.393 5.393 16 O -0.483 6.483 17 C -0.046 4.046 18 N -0.070 5.070 19 C -0.077 4.077 20 C 0.049 3.951 21 N -0.317 5.317 22 C -0.366 4.366 23 H 0.086 0.914 24 C -0.244 4.244 25 N -0.580 5.580 26 Si 0.775 3.225 27 H -0.212 1.212 28 H -0.226 1.226 29 H -0.198 1.198 30 H 0.094 0.906 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.242 0.758 38 H 0.161 0.839 39 H 0.249 0.751 40 H 0.243 0.757 41 H 0.252 0.748 42 H 0.112 0.888 43 H 0.146 0.854 44 H 0.087 0.913 45 H 0.020 0.980 46 H 0.060 0.940 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 2.747 -16.178 8.569 18.512 hybrid contribution -0.631 -0.276 -1.299 1.471 sum 2.116 -16.453 7.270 18.112 Atomic orbital electron populations 1.21722 0.94988 1.01122 1.00774 1.20747 0.93973 0.93274 0.86989 0.96525 1.21972 0.94953 1.00877 0.98246 1.21667 0.97082 1.00068 0.95988 1.21557 0.96583 0.81714 0.97757 0.90993 1.45484 1.29600 1.07670 1.50413 1.17279 0.83964 0.83527 0.78421 1.90719 1.23997 1.85507 1.46886 1.19673 1.01397 0.90181 1.07416 1.21187 0.94240 0.96103 0.99546 1.19571 1.01368 0.95881 1.10513 1.17462 0.83126 0.82280 0.78899 1.43390 1.33031 1.11519 1.51381 1.90790 1.46887 1.71655 1.38943 1.23139 0.88861 0.94819 0.97760 1.43818 1.21578 1.08313 1.33303 1.22497 0.85240 1.05399 0.94552 1.20816 0.84233 0.95292 0.94715 1.44233 1.02232 1.65393 1.19888 1.19308 0.95820 1.35264 0.86231 0.91433 1.25686 0.99092 1.00826 0.98793 1.70163 1.27232 1.44672 1.15928 0.85582 0.78087 0.79207 0.79663 1.21205 1.22608 1.19821 0.90637 0.94606 0.93426 0.92401 0.89135 0.89691 0.90382 0.75822 0.83871 0.75149 0.75666 0.74768 0.88807 0.85361 0.91315 0.97990 0.94034 0.94760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.63 7.96 71.98 0.57 -4.05 16 2 C 0.16 6.06 3.50 44.98 0.16 6.22 16 3 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 4 C -0.12 -3.64 5.21 30.67 0.16 -3.48 16 5 C -0.11 -3.27 5.59 30.62 0.17 -3.10 16 6 C 0.13 4.98 2.85 45.07 0.13 5.11 16 7 H 0.07 2.84 7.51 -2.39 -0.02 2.83 16 8 N -0.68 -25.23 4.90 -446.01 -2.18 -27.41 16 9 C 0.58 22.71 7.74 86.49 0.67 23.38 16 10 O -0.59 -25.96 14.36 -4.29 -0.06 -26.02 16 11 C -0.08 -2.51 6.82 40.01 0.27 -2.24 16 12 C -0.08 -2.68 10.10 22.59 0.23 -2.45 16 13 C -0.26 -6.74 6.13 -20.12 -0.12 -6.86 16 14 C 0.59 14.99 8.09 86.65 0.70 15.69 16 15 N -0.83 -10.70 8.86 -175.91 -1.56 -12.26 16 16 O -0.60 -21.20 17.76 -4.07 -0.07 -21.27 16 17 C 0.10 1.75 10.87 84.32 0.92 2.67 16 18 N -0.40 -10.05 3.12 -533.96 -1.67 -11.71 16 19 C 0.06 1.29 10.37 127.77 1.32 2.61 16 20 C 0.18 8.69 4.88 86.35 0.42 9.11 16 21 N -0.59 -28.87 2.89 -675.04 -1.95 -30.82 16 22 C -0.24 -12.82 8.53 84.04 0.72 -12.10 16 23 H 0.07 3.62 6.28 -2.91 -0.02 3.60 16 24 C -0.05 -2.81 4.90 84.86 0.42 -2.39 16 25 N -0.93 -57.29 11.40 21.65 0.25 -57.04 16 26 Si 0.95 46.96 29.58 68.60 2.03 48.99 16 27 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 28 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 29 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16 30 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.03 1.44 7.68 -2.39 -0.02 1.42 16 32 H 0.05 1.75 7.39 -2.39 -0.02 1.73 16 33 H 0.06 1.74 6.40 -2.39 -0.02 1.73 16 34 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.40 13.72 5.62 -92.71 -0.52 13.20 16 38 H 0.14 4.59 7.39 -2.91 -0.02 4.57 16 39 H 0.42 1.98 7.74 -92.70 -0.72 1.26 16 40 H 0.41 4.33 8.93 -92.71 -0.83 3.50 16 41 H 0.24 1.11 7.44 -2.91 -0.02 1.09 16 42 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.13 1.42 8.12 -2.39 -0.02 1.41 16 44 H 0.07 2.01 6.59 -2.38 -0.02 1.99 16 45 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 46 H 0.04 2.43 6.29 -2.39 -0.02 2.42 16 47 H 0.24 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -84.33 376.40 0.48 -83.85 By element: Atomic # 1 Polarization: 26.62 SS G_CDS: -1.03 Total: 25.59 kcal Atomic # 6 Polarization: 21.38 SS G_CDS: 6.73 Total: 28.11 kcal Atomic # 7 Polarization: -132.13 SS G_CDS: -7.12 Total: -139.24 kcal Atomic # 8 Polarization: -47.16 SS G_CDS: -0.13 Total: -47.30 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -84.33 0.48 -83.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071648682.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.890 kcal (2) G-P(sol) polarization free energy of solvation -84.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds