Wall clock time and date at job start Tue Mar 31 2020 19:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.58309 * 2 1 4 4 C 1.53190 * 109.58542 * 239.57280 * 2 1 3 5 5 C 1.53045 * 109.30736 * 185.57855 * 4 2 1 6 6 C 1.53038 * 109.53863 * 61.36411 * 5 4 2 7 7 H 1.09007 * 109.52172 * 58.60157 * 6 5 4 8 8 N 1.46503 * 109.49510 * 178.67820 * 6 5 4 9 9 C 1.34779 * 120.00035 * 204.83689 * 8 6 5 10 10 O 1.21677 * 120.00036 * 4.86697 * 9 8 6 11 11 C 1.46812 * 119.99749 * 184.86628 * 9 8 6 12 12 C 1.36349 * 125.85280 * 354.49104 * 11 9 8 13 13 C 1.41302 * 107.01422 * 180.02562 * 12 11 9 14 14 C 1.47387 * 126.46607 * 180.02562 * 13 12 11 15 15 N 1.34769 * 120.00091 * 179.97438 * 14 13 12 16 16 O 1.21609 * 119.99592 * 0.02562 * 14 13 12 17 17 C 1.38212 * 107.07142 * 0.26258 * 13 12 11 18 18 N 1.34263 * 108.39580 * 359.56520 * 17 13 12 19 19 C 1.46506 * 125.39217 * 180.16409 * 18 17 13 20 20 C 1.53190 * 109.31461 * 298.63255 * 6 5 4 21 21 N 1.46927 * 109.58338 * 120.27820 * 2 1 3 22 22 C 1.36940 * 120.63340 * 353.37932 * 21 2 1 23 23 H 1.07995 * 120.00093 * 27.24664 * 22 21 2 24 24 C 1.38811 * 119.99538 * 207.24250 * 22 21 2 25 25 N 1.31610 * 120.00563 * 18.44708 * 24 22 21 26 26 Si 1.86799 * 119.99460 * 198.44807 * 24 22 21 27 27 H 1.48502 * 109.47258 * 95.00008 * 26 24 22 28 28 H 1.48501 * 109.47272 * 214.99541 * 26 24 22 29 29 H 1.48500 * 109.47675 * 334.99664 * 26 24 22 30 30 H 1.09001 * 109.47039 * 299.71467 * 1 2 3 31 31 H 1.08998 * 109.46724 * 59.72010 * 1 2 3 32 32 H 1.09002 * 109.47066 * 179.72022 * 1 2 3 33 33 H 1.08998 * 109.49266 * 305.52638 * 4 2 1 34 34 H 1.08995 * 109.49745 * 65.62930 * 4 2 1 35 35 H 1.08994 * 109.45773 * 301.34009 * 5 4 2 36 36 H 1.08997 * 109.45581 * 181.38344 * 5 4 2 37 37 H 0.97002 * 120.00040 * 24.84251 * 8 6 5 38 38 H 1.08007 * 126.48991 * 0.04066 * 12 11 9 39 39 H 0.97005 * 120.00478 * 359.97438 * 15 14 13 40 40 H 0.97000 * 120.00433 * 180.02562 * 15 14 13 41 41 H 1.07995 * 125.79927 * 179.70688 * 17 13 12 42 42 H 1.08996 * 109.47041 * 272.89938 * 19 18 17 43 43 H 1.09003 * 109.46761 * 32.90026 * 19 18 17 44 44 H 1.09004 * 109.46984 * 152.89739 * 19 18 17 45 45 H 1.09001 * 109.58384 * 174.42371 * 20 6 5 46 46 H 1.09004 * 109.58595 * 294.85125 * 20 6 5 47 47 H 0.96996 * 120.00327 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7309 -1.2445 5 6 3.5676 -0.8494 -1.1690 6 6 3.9569 -1.6655 0.0657 7 1 3.4987 -2.6530 0.0090 8 7 5.4143 -1.8051 0.1199 9 6 5.9678 -2.8453 0.7742 10 8 5.2587 -3.7156 1.2438 11 6 7.4263 -2.9284 0.9203 12 6 8.3349 -2.0833 0.3552 13 6 9.6159 -2.5270 0.7539 14 6 10.9072 -1.9195 0.3855 15 7 12.0575 -2.4526 0.8425 16 8 10.9346 -0.9367 -0.3302 17 6 9.4297 -3.6412 1.5501 18 7 8.1113 -3.8742 1.6514 19 6 7.4985 -4.9652 2.4134 20 6 3.4650 -0.9452 1.3250 21 7 2.0225 -0.6980 1.1954 22 6 1.1537 -1.1099 2.1705 23 1 0.1282 -1.3371 1.9191 24 6 1.5911 -1.2355 3.4818 25 7 2.6957 -0.6330 3.8678 26 14 0.6118 -2.2599 4.6988 27 1 1.1730 -3.6337 4.7539 28 1 0.6911 -1.6386 6.0453 29 1 -0.8071 -2.3217 4.2650 30 1 -0.3633 0.5094 0.8925 31 1 -0.3633 0.5182 -0.8875 32 1 -0.3633 -1.0277 -0.0050 33 1 1.6030 -1.7269 -1.2890 34 1 1.7661 -0.1695 -2.1365 35 1 4.0061 0.1460 -1.0994 36 1 3.9379 -1.3474 -2.0650 37 1 5.9809 -1.1488 -0.3151 38 1 8.1168 -1.2353 -0.2771 39 1 12.0356 -3.2359 1.4143 40 1 12.9074 -2.0526 0.6004 41 1 10.2117 -4.2240 2.0140 42 1 7.4366 -5.8554 1.7875 43 1 8.1062 -5.1805 3.2923 44 1 6.4969 -4.6712 2.7273 45 1 3.6518 -1.5689 2.1992 46 1 3.9903 0.0040 1.4317 47 1 3.0012 -0.7205 4.7842 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071648690.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:43 Heat of formation + Delta-G solvation = -7.628009 kcal Electronic energy + Delta-G solvation = -29395.044372 eV Core-core repulsion = 25385.978525 eV Total energy + Delta-G solvation = -4009.065847 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.71943 -39.32230 -38.79502 -37.46523 -34.55374 -33.83300 -33.06860 -32.71191 -30.99510 -29.90426 -29.17024 -27.00365 -25.99883 -24.98892 -23.31595 -22.56265 -22.09862 -20.53630 -19.83855 -19.65886 -19.11536 -18.22805 -17.10723 -16.43518 -16.04621 -15.83303 -15.67573 -15.55801 -14.98540 -14.53021 -14.16878 -14.09258 -13.80552 -13.76697 -13.72025 -13.37908 -13.23598 -12.78100 -12.61372 -12.40116 -12.32732 -12.29628 -11.85526 -11.46241 -11.11544 -10.89826 -10.72454 -10.52171 -10.38283 -10.24799 -10.20644 -9.95955 -9.84553 -9.79274 -9.48746 -9.44120 -8.97267 -8.65888 -8.41606 -8.36241 -6.63891 -5.74148 -3.15406 1.42621 1.74731 2.49268 3.34978 3.39621 3.42414 3.49064 3.49146 3.60150 3.69106 4.53220 4.55375 4.60603 4.84628 5.04570 5.07328 5.14051 5.34694 5.38147 5.48928 5.55138 5.58212 5.68280 5.69458 5.88406 5.97792 6.13234 6.27911 6.30038 6.39055 6.40640 6.46311 6.50485 6.63101 6.64622 6.67937 6.75021 6.90109 6.93179 7.05505 7.13656 7.22800 7.32258 7.72090 7.84898 7.89667 8.21144 8.47852 8.54314 9.24222 9.89633 10.44212 11.33996 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013501 B = 0.003274 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.451155 B = 8550.739643 C = 9779.628389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.164 3.836 3 H 0.026 0.974 4 C -0.125 4.125 5 C -0.117 4.117 6 C 0.119 3.881 7 H 0.085 0.915 8 N -0.705 5.705 9 C 0.584 3.416 10 O -0.541 6.541 11 C -0.041 4.041 12 C -0.082 4.082 13 C -0.238 4.238 14 C 0.596 3.404 15 N -0.857 5.857 16 O -0.548 6.548 17 C 0.057 3.943 18 N -0.393 5.393 19 C 0.059 3.941 20 C 0.168 3.832 21 N -0.583 5.583 22 C -0.251 4.251 23 H 0.072 0.928 24 C 0.005 3.995 25 N -0.899 5.899 26 Si 0.898 3.102 27 H -0.288 1.288 28 H -0.293 1.293 29 H -0.278 1.278 30 H 0.061 0.939 31 H 0.038 0.962 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.396 0.604 38 H 0.154 0.846 39 H 0.397 0.603 40 H 0.402 0.598 41 H 0.176 0.824 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.113 0.887 45 H 0.093 0.907 46 H 0.018 0.982 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.996 -6.823 -6.499 17.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.044 0.956 4 C -0.165 4.165 5 C -0.156 4.156 6 C 0.014 3.986 7 H 0.103 0.897 8 N -0.355 5.355 9 C 0.371 3.629 10 O -0.420 6.420 11 C -0.153 4.153 12 C -0.108 4.108 13 C -0.248 4.248 14 C 0.384 3.616 15 N -0.421 5.421 16 O -0.426 6.426 17 C -0.085 4.085 18 N -0.064 5.064 19 C -0.082 4.082 20 C 0.040 3.960 21 N -0.307 5.307 22 C -0.381 4.381 23 H 0.090 0.910 24 C -0.194 4.194 25 N -0.543 5.543 26 Si 0.728 3.272 27 H -0.215 1.215 28 H -0.219 1.219 29 H -0.204 1.204 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.230 0.770 38 H 0.171 0.829 39 H 0.225 0.775 40 H 0.232 0.768 41 H 0.193 0.807 42 H 0.099 0.901 43 H 0.103 0.897 44 H 0.132 0.868 45 H 0.111 0.889 46 H 0.037 0.963 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 14.083 -7.064 -6.250 16.950 hybrid contribution 0.436 -0.522 0.821 1.066 sum 14.519 -7.586 -5.429 17.257 Atomic orbital electron populations 1.21810 0.95996 1.01383 1.00250 1.20498 0.93079 0.93626 0.87023 0.95645 1.22039 0.94234 1.01324 0.98912 1.21688 0.97431 0.99783 0.96654 1.22047 0.77019 1.01100 0.98459 0.89737 1.45770 1.08815 1.26305 1.54606 1.16891 0.84844 0.82358 0.78844 1.90804 1.62974 1.39261 1.48919 1.19999 0.93261 0.96318 1.05745 1.21100 0.90240 0.99043 1.00382 1.19452 0.93720 1.01486 1.10147 1.17418 0.83230 0.82422 0.78565 1.43682 1.08555 1.34675 1.55148 1.90815 1.87551 1.26360 1.37841 1.22298 0.85362 0.98947 1.01928 1.43612 1.05493 1.22122 1.35143 1.22470 1.01945 0.88206 0.95577 1.21088 0.83584 0.97024 0.94258 1.44050 1.02618 1.64879 1.19129 1.19185 0.94084 1.38325 0.86494 0.91016 1.25007 0.97944 0.99646 0.96819 1.70040 1.24521 1.42984 1.16768 0.86335 0.79657 0.80464 0.80713 1.21492 1.21919 1.20372 0.92000 0.94298 0.92797 0.92044 0.92581 0.92090 0.92903 0.76995 0.82852 0.77471 0.76766 0.80722 0.90087 0.89734 0.86831 0.88864 0.96345 0.93816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 7.93 37.16 0.29 -2.26 16 2 C 0.16 3.35 3.50 -67.60 -0.24 3.11 16 3 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 4 C -0.13 -2.12 5.37 -26.61 -0.14 -2.26 16 5 C -0.12 -1.90 5.35 -26.69 -0.14 -2.04 16 6 C 0.12 2.29 2.64 -67.81 -0.18 2.11 16 7 H 0.08 1.84 7.52 -51.93 -0.39 1.45 16 8 N -0.71 -11.78 5.06 -54.95 -0.28 -12.06 16 9 C 0.58 10.38 7.74 -12.79 -0.10 10.28 16 10 O -0.54 -11.36 14.23 5.21 0.07 -11.28 16 11 C -0.04 -0.61 6.82 -82.41 -0.56 -1.17 16 12 C -0.08 -1.12 10.10 -39.10 -0.39 -1.52 16 13 C -0.24 -2.84 6.13 -105.02 -0.64 -3.49 16 14 C 0.60 7.11 8.09 -12.54 -0.10 7.01 16 15 N -0.86 -5.87 8.86 30.42 0.27 -5.60 16 16 O -0.55 -8.86 17.75 5.27 0.09 -8.77 16 17 C 0.06 0.53 10.88 -16.50 -0.18 0.35 16 18 N -0.39 -4.76 3.12 -120.12 -0.38 -5.13 16 19 C 0.06 0.60 10.54 59.85 0.63 1.23 16 20 C 0.17 4.02 4.89 -3.71 -0.02 4.00 16 21 N -0.58 -14.41 3.00 -164.77 -0.49 -14.91 16 22 C -0.25 -6.83 8.63 -15.06 -0.13 -6.96 16 23 H 0.07 1.90 6.17 -52.49 -0.32 1.58 16 24 C 0.00 0.13 4.88 -17.43 -0.09 0.04 16 25 N -0.90 -26.46 11.23 55.49 0.62 -25.84 16 26 Si 0.90 22.15 29.59 -169.99 -5.03 17.12 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 28 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 29 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 30 H 0.06 1.25 7.60 -51.93 -0.39 0.86 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.05 1.02 7.46 -51.93 -0.39 0.63 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.40 5.47 7.45 -40.82 -0.30 5.17 16 38 H 0.15 1.95 7.39 -52.48 -0.39 1.56 16 39 H 0.40 1.43 7.74 -40.82 -0.32 1.12 16 40 H 0.40 2.25 8.93 -40.82 -0.36 1.89 16 41 H 0.18 0.79 7.44 -52.49 -0.39 0.40 16 42 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.11 1.56 6.23 -51.93 -0.32 1.24 16 45 H 0.09 2.63 6.04 -51.93 -0.31 2.31 16 46 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 379.21 15.07 5.71 5.71 Total: -1.00 -36.20 379.21 -8.23 -44.42 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -6.84 Total: 7.87 kcal Atomic # 6 Polarization: 10.44 SS G_CDS: -1.99 Total: 8.45 kcal Atomic # 7 Polarization: -63.28 SS G_CDS: -0.25 Total: -63.53 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: 0.17 Total: -20.05 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.12 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.20 -8.23 -44.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071648690.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.797 kcal (2) G-P(sol) polarization free energy of solvation -36.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds