Wall clock time and date at job start Tue Mar 31 2020 19:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.58309 * 2 1 4 4 C 1.53190 * 109.58542 * 239.57280 * 2 1 3 5 5 C 1.53045 * 109.30736 * 185.57855 * 4 2 1 6 6 C 1.53038 * 109.53863 * 61.36411 * 5 4 2 7 7 H 1.09007 * 109.52172 * 58.60157 * 6 5 4 8 8 N 1.46503 * 109.49510 * 178.67820 * 6 5 4 9 9 C 1.34779 * 120.00035 * 204.83689 * 8 6 5 10 10 O 1.21677 * 120.00036 * 4.86697 * 9 8 6 11 11 C 1.46812 * 119.99749 * 184.86628 * 9 8 6 12 12 C 1.36349 * 125.85280 * 354.49104 * 11 9 8 13 13 C 1.41302 * 107.01422 * 180.02562 * 12 11 9 14 14 C 1.47387 * 126.46607 * 180.02562 * 13 12 11 15 15 N 1.34769 * 120.00091 * 179.97438 * 14 13 12 16 16 O 1.21609 * 119.99592 * 0.02562 * 14 13 12 17 17 C 1.38212 * 107.07142 * 0.26258 * 13 12 11 18 18 N 1.34263 * 108.39580 * 359.56520 * 17 13 12 19 19 C 1.46506 * 125.39217 * 180.16409 * 18 17 13 20 20 C 1.53190 * 109.31461 * 298.63255 * 6 5 4 21 21 N 1.46927 * 109.58338 * 120.27820 * 2 1 3 22 22 C 1.36940 * 120.63340 * 353.37932 * 21 2 1 23 23 H 1.07995 * 120.00093 * 27.24664 * 22 21 2 24 24 C 1.38811 * 119.99538 * 207.24250 * 22 21 2 25 25 N 1.31610 * 120.00563 * 18.44708 * 24 22 21 26 26 Si 1.86799 * 119.99460 * 198.44807 * 24 22 21 27 27 H 1.48502 * 109.47258 * 95.00008 * 26 24 22 28 28 H 1.48501 * 109.47272 * 214.99541 * 26 24 22 29 29 H 1.48500 * 109.47675 * 334.99664 * 26 24 22 30 30 H 1.09001 * 109.47039 * 299.71467 * 1 2 3 31 31 H 1.08998 * 109.46724 * 59.72010 * 1 2 3 32 32 H 1.09002 * 109.47066 * 179.72022 * 1 2 3 33 33 H 1.08998 * 109.49266 * 305.52638 * 4 2 1 34 34 H 1.08995 * 109.49745 * 65.62930 * 4 2 1 35 35 H 1.08994 * 109.45773 * 301.34009 * 5 4 2 36 36 H 1.08997 * 109.45581 * 181.38344 * 5 4 2 37 37 H 0.97002 * 120.00040 * 24.84251 * 8 6 5 38 38 H 1.08007 * 126.48991 * 0.04066 * 12 11 9 39 39 H 0.97005 * 120.00478 * 359.97438 * 15 14 13 40 40 H 0.97000 * 120.00433 * 180.02562 * 15 14 13 41 41 H 1.07995 * 125.79927 * 179.70688 * 17 13 12 42 42 H 1.08996 * 109.47041 * 272.89938 * 19 18 17 43 43 H 1.09003 * 109.46761 * 32.90026 * 19 18 17 44 44 H 1.09004 * 109.46984 * 152.89739 * 19 18 17 45 45 H 1.09001 * 109.58384 * 174.42371 * 20 6 5 46 46 H 1.09004 * 109.58595 * 294.85125 * 20 6 5 47 47 H 0.96996 * 120.00327 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7309 -1.2445 5 6 3.5676 -0.8494 -1.1690 6 6 3.9569 -1.6655 0.0657 7 1 3.4987 -2.6530 0.0090 8 7 5.4143 -1.8051 0.1199 9 6 5.9678 -2.8453 0.7742 10 8 5.2587 -3.7156 1.2438 11 6 7.4263 -2.9284 0.9203 12 6 8.3349 -2.0833 0.3552 13 6 9.6159 -2.5270 0.7539 14 6 10.9072 -1.9195 0.3855 15 7 12.0575 -2.4526 0.8425 16 8 10.9346 -0.9367 -0.3302 17 6 9.4297 -3.6412 1.5501 18 7 8.1113 -3.8742 1.6514 19 6 7.4985 -4.9652 2.4134 20 6 3.4650 -0.9452 1.3250 21 7 2.0225 -0.6980 1.1954 22 6 1.1537 -1.1099 2.1705 23 1 0.1282 -1.3371 1.9191 24 6 1.5911 -1.2355 3.4818 25 7 2.6957 -0.6330 3.8678 26 14 0.6118 -2.2599 4.6988 27 1 1.1730 -3.6337 4.7539 28 1 0.6911 -1.6386 6.0453 29 1 -0.8071 -2.3217 4.2650 30 1 -0.3633 0.5094 0.8925 31 1 -0.3633 0.5182 -0.8875 32 1 -0.3633 -1.0277 -0.0050 33 1 1.6030 -1.7269 -1.2890 34 1 1.7661 -0.1695 -2.1365 35 1 4.0061 0.1460 -1.0994 36 1 3.9379 -1.3474 -2.0650 37 1 5.9809 -1.1488 -0.3151 38 1 8.1168 -1.2353 -0.2771 39 1 12.0356 -3.2359 1.4143 40 1 12.9074 -2.0526 0.6004 41 1 10.2117 -4.2240 2.0140 42 1 7.4366 -5.8554 1.7875 43 1 8.1062 -5.1805 3.2923 44 1 6.4969 -4.6712 2.7273 45 1 3.6518 -1.5689 2.1992 46 1 3.9903 0.0040 1.4317 47 1 3.0012 -0.7205 4.7842 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071648690.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:42 Heat of formation + Delta-G solvation = -36.150805 kcal Electronic energy + Delta-G solvation = -29396.281214 eV Core-core repulsion = 25385.978525 eV Total energy + Delta-G solvation = -4010.302689 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.70491 -40.67856 -39.84637 -39.04603 -36.10985 -34.73055 -34.65677 -33.89468 -32.41267 -31.77036 -30.31218 -27.87499 -27.70972 -26.74726 -24.46882 -23.99376 -23.41578 -22.02927 -21.21632 -20.87586 -20.34246 -19.24392 -18.35101 -17.98414 -17.32402 -17.04082 -16.83038 -16.74445 -16.45312 -15.84874 -15.59227 -15.46203 -15.29577 -15.15107 -14.99784 -14.64911 -14.52477 -14.41295 -14.12159 -13.53497 -13.46612 -13.28566 -13.17144 -13.08469 -12.75494 -12.73852 -12.58137 -12.25849 -12.11672 -11.98407 -11.66990 -11.42982 -11.20529 -11.16059 -10.97143 -10.60539 -10.54081 -10.17212 -9.92814 -9.39048 -8.66247 -7.85973 -5.29087 0.42349 0.76982 1.40706 1.44623 1.51485 1.53248 2.17705 2.30984 2.50823 2.59271 2.78667 3.29481 3.59052 3.74638 3.77503 3.90918 3.96976 4.08474 4.18944 4.24596 4.28799 4.36665 4.38313 4.59156 4.68580 4.70194 4.74307 4.79882 4.88202 4.96625 5.00249 5.06675 5.17765 5.28603 5.30563 5.37714 5.48548 5.53887 5.60451 5.66198 5.70318 5.77470 5.98891 6.09505 6.38926 6.54071 6.59940 7.13313 7.20288 7.46819 7.89179 8.38463 9.19655 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013501 B = 0.003274 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.451155 B = 8550.739643 C = 9779.628389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.152 3.848 3 H 0.021 0.979 4 C -0.116 4.116 5 C -0.110 4.110 6 C 0.135 3.865 7 H 0.057 0.943 8 N -0.699 5.699 9 C 0.579 3.421 10 O -0.583 6.583 11 C -0.078 4.078 12 C -0.081 4.081 13 C -0.262 4.262 14 C 0.596 3.404 15 N -0.830 5.830 16 O -0.601 6.601 17 C 0.100 3.900 18 N -0.400 5.400 19 C 0.058 3.942 20 C 0.181 3.819 21 N -0.602 5.602 22 C -0.250 4.250 23 H 0.077 0.923 24 C -0.055 4.055 25 N -0.934 5.934 26 Si 0.956 3.044 27 H -0.296 1.296 28 H -0.295 1.295 29 H -0.262 1.262 30 H 0.038 0.962 31 H 0.079 0.921 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.411 0.589 38 H 0.153 0.847 39 H 0.417 0.583 40 H 0.411 0.589 41 H 0.235 0.765 42 H 0.094 0.906 43 H 0.127 0.873 44 H 0.070 0.930 45 H 0.044 0.956 46 H -0.005 1.005 47 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.653 -7.929 -7.782 20.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.047 3.953 3 H 0.039 0.961 4 C -0.156 4.156 5 C -0.148 4.148 6 C 0.029 3.971 7 H 0.075 0.925 8 N -0.350 5.350 9 C 0.367 3.633 10 O -0.465 6.465 11 C -0.189 4.189 12 C -0.107 4.107 13 C -0.272 4.272 14 C 0.383 3.617 15 N -0.394 5.394 16 O -0.483 6.483 17 C -0.043 4.043 18 N -0.070 5.070 19 C -0.082 4.082 20 C 0.053 3.947 21 N -0.326 5.326 22 C -0.380 4.380 23 H 0.095 0.905 24 C -0.250 4.250 25 N -0.580 5.580 26 Si 0.785 3.215 27 H -0.223 1.223 28 H -0.222 1.222 29 H -0.186 1.186 30 H 0.057 0.943 31 H 0.097 0.903 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.114 0.886 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.247 0.753 38 H 0.170 0.830 39 H 0.248 0.752 40 H 0.243 0.757 41 H 0.251 0.749 42 H 0.113 0.887 43 H 0.145 0.855 44 H 0.089 0.911 45 H 0.062 0.938 46 H 0.013 0.987 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 15.757 -8.184 -7.555 19.296 hybrid contribution 0.011 -0.186 1.218 1.233 sum 15.768 -8.371 -6.336 18.943 Atomic orbital electron populations 1.21739 0.94632 1.01233 1.01080 1.20821 0.94388 0.93373 0.86731 0.96135 1.21942 0.94283 1.00997 0.98340 1.21669 0.97307 0.99963 0.95847 1.21562 0.78326 0.99427 0.97791 0.92451 1.45613 1.07965 1.26712 1.54693 1.17409 0.86327 0.81741 0.77797 1.90776 1.64370 1.40814 1.50581 1.19576 0.91592 0.98887 1.08844 1.21258 0.91233 0.98538 0.99679 1.19561 0.93171 1.02842 1.11588 1.17442 0.84210 0.81866 0.78165 1.43418 1.07495 1.34574 1.53897 1.90793 1.88263 1.28760 1.40464 1.23158 0.85138 0.97234 0.98801 1.43830 1.06337 1.21935 1.34860 1.22545 1.00614 0.87779 0.97230 1.20756 0.83775 0.95246 0.94883 1.44350 1.02497 1.65729 1.20071 1.19533 0.94603 1.36789 0.87055 0.90493 1.25737 0.99234 1.01284 0.98701 1.70200 1.26369 1.44960 1.16496 0.85403 0.79183 0.78333 0.78583 1.22325 1.22154 1.18618 0.94320 0.90266 0.93397 0.92668 0.88566 0.91005 0.89665 0.75258 0.82973 0.75156 0.75658 0.74850 0.88740 0.85507 0.91087 0.93760 0.98654 0.94699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.68 7.93 71.98 0.57 -4.11 16 2 C 0.15 6.11 3.50 44.98 0.16 6.27 16 3 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 4 C -0.12 -3.68 5.37 30.67 0.16 -3.51 16 5 C -0.11 -3.39 5.35 30.62 0.16 -3.22 16 6 C 0.13 5.39 2.64 45.07 0.12 5.50 16 7 H 0.06 2.62 7.52 -2.38 -0.02 2.60 16 8 N -0.70 -24.35 5.06 -446.00 -2.26 -26.61 16 9 C 0.58 21.69 7.74 86.49 0.67 22.36 16 10 O -0.58 -26.27 14.23 -4.28 -0.06 -26.33 16 11 C -0.08 -2.34 6.82 40.01 0.27 -2.07 16 12 C -0.08 -2.20 10.10 22.58 0.23 -1.98 16 13 C -0.26 -5.75 6.13 -20.12 -0.12 -5.87 16 14 C 0.60 13.06 8.09 86.65 0.70 13.76 16 15 N -0.83 -8.54 8.86 -175.92 -1.56 -10.09 16 16 O -0.60 -19.17 17.75 -4.06 -0.07 -19.24 16 17 C 0.10 1.52 10.88 84.32 0.92 2.44 16 18 N -0.40 -9.06 3.12 -533.96 -1.67 -10.73 16 19 C 0.06 1.13 10.54 127.77 1.35 2.48 16 20 C 0.18 9.18 4.89 86.36 0.42 9.60 16 21 N -0.60 -30.74 3.00 -675.21 -2.02 -32.76 16 22 C -0.25 -13.99 8.63 84.03 0.73 -13.27 16 23 H 0.08 4.15 6.17 -2.91 -0.02 4.13 16 24 C -0.05 -3.19 4.88 84.86 0.41 -2.78 16 25 N -0.93 -58.09 11.23 21.65 0.24 -57.85 16 26 Si 0.96 47.26 29.59 68.60 2.03 49.29 16 27 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16 28 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 29 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 30 H 0.04 1.55 7.60 -2.39 -0.02 1.53 16 31 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.05 1.77 7.46 -2.39 -0.02 1.75 16 33 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.07 2.09 8.14 -2.39 -0.02 2.08 16 36 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.41 11.63 7.45 -92.71 -0.69 10.94 16 38 H 0.15 3.97 7.39 -2.91 -0.02 3.95 16 39 H 0.42 0.98 7.74 -92.70 -0.72 0.27 16 40 H 0.41 3.34 8.93 -92.71 -0.83 2.52 16 41 H 0.24 0.55 7.44 -2.91 -0.02 0.53 16 42 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.07 2.06 6.23 -2.38 -0.01 2.05 16 45 H 0.04 2.68 6.04 -2.39 -0.01 2.67 16 46 H 0.00 -0.25 8.14 -2.39 -0.02 -0.26 16 47 H 0.24 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -87.26 379.21 0.18 -87.09 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: -1.20 Total: 21.63 kcal Atomic # 6 Polarization: 18.86 SS G_CDS: 6.75 Total: 25.61 kcal Atomic # 7 Polarization: -130.78 SS G_CDS: -7.27 Total: -138.04 kcal Atomic # 8 Polarization: -45.44 SS G_CDS: -0.13 Total: -45.58 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Total: -87.26 0.18 -87.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071648690.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.936 kcal (2) G-P(sol) polarization free energy of solvation -87.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds