Wall clock time and date at job start Tue Mar 31 2020 19:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.59085 * 2 1 4 4 C 1.53193 * 109.58433 * 120.28086 * 2 1 3 5 5 C 1.53041 * 109.31300 * 174.56357 * 4 2 1 6 6 C 1.53044 * 109.53884 * 298.63377 * 5 4 2 7 7 H 1.08998 * 109.49701 * 181.34645 * 6 5 4 8 8 N 1.46497 * 109.49704 * 301.41588 * 6 5 4 9 9 C 1.34771 * 119.99896 * 204.99787 * 8 6 5 10 10 O 1.21569 * 120.00165 * 0.02562 * 9 8 6 11 11 C 1.47721 * 120.00208 * 179.97438 * 9 8 6 12 12 C 1.41295 * 125.95432 * 179.71906 * 11 9 8 13 13 C 1.34860 * 107.70679 * 179.79401 * 12 11 9 14 14 N 1.36393 * 107.92122 * 0.51871 * 13 12 11 15 15 N 1.32123 * 125.94930 * 0.02941 * 11 9 8 16 16 C 1.46723 * 123.62081 * 179.52544 * 14 13 12 17 17 C 1.53526 * 107.96397 * 343.06530 * 16 14 13 18 18 C 1.53227 * 109.30247 * 47.26855 * 17 16 14 19 19 O 1.36031 * 128.63409 * 180.33655 * 13 12 11 20 20 C 1.53191 * 109.30755 * 61.36274 * 6 5 4 21 21 N 1.46917 * 109.70402 * 239.63746 * 2 1 3 22 22 C 1.36945 * 120.63269 * 6.51524 * 21 2 1 23 23 H 1.07999 * 119.99653 * 330.19743 * 22 21 2 24 24 C 1.38810 * 120.00178 * 150.19385 * 22 21 2 25 25 N 1.31620 * 119.99942 * 344.48884 * 24 22 21 26 26 Si 1.86795 * 119.99872 * 164.48482 * 24 22 21 27 27 H 1.48497 * 109.47152 * 60.00445 * 26 24 22 28 28 H 1.48507 * 109.47028 * 180.02562 * 26 24 22 29 29 H 1.48494 * 109.47373 * 300.00024 * 26 24 22 30 30 H 1.09000 * 109.47021 * 300.00230 * 1 2 3 31 31 H 1.08996 * 109.46860 * 60.00275 * 1 2 3 32 32 H 1.08996 * 109.46920 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.50293 * 294.51312 * 4 2 1 34 34 H 1.08997 * 109.49933 * 54.61186 * 4 2 1 35 35 H 1.09001 * 109.45644 * 58.65504 * 5 4 2 36 36 H 1.09001 * 109.46009 * 178.61472 * 5 4 2 37 37 H 0.96997 * 120.00285 * 24.99505 * 8 6 5 38 38 H 1.07997 * 126.14153 * 359.92570 * 12 11 9 39 39 H 1.09000 * 109.75841 * 102.69318 * 16 14 13 40 40 H 1.09007 * 109.76466 * 223.45299 * 16 14 13 41 41 H 1.09001 * 109.49961 * 287.32310 * 17 16 14 42 42 H 1.08997 * 109.52746 * 167.23902 * 17 16 14 43 43 H 1.09001 * 109.50308 * 175.45667 * 18 17 16 44 44 H 1.09001 * 109.53403 * 55.35849 * 18 17 16 45 45 H 1.09006 * 109.58889 * 65.15964 * 20 6 5 46 46 H 1.09004 * 109.58178 * 185.43292 * 20 6 5 47 47 H 0.97005 * 119.99905 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7278 1.2464 5 6 3.5678 -0.8434 1.1730 6 6 3.9604 -1.6610 -0.0597 7 1 5.0449 -1.7631 -0.0983 8 7 3.3465 -2.9888 0.0184 9 6 3.9059 -4.0290 -0.6308 10 8 4.9201 -3.8656 -1.2808 11 6 3.2872 -5.3681 -0.5515 12 6 3.7614 -6.5397 -1.1831 13 6 2.9243 -7.5468 -0.8611 14 7 1.9429 -7.0377 -0.0625 15 7 2.1909 -5.6777 0.1177 16 6 0.8399 -7.8387 0.4803 17 6 0.7591 -9.1419 -0.3273 18 6 2.1625 -9.7420 -0.4624 19 8 2.9855 -8.8539 -1.2329 20 6 3.4685 -0.9437 -1.3209 21 7 2.0254 -0.6991 -1.1934 22 6 1.1585 -1.1154 -2.1684 23 1 0.1447 -1.3842 -1.9107 24 6 1.5827 -1.1917 -3.4879 25 7 2.6925 -0.5888 -3.8583 26 14 0.5784 -2.1500 -4.7379 27 1 -0.7832 -1.5650 -4.8321 28 1 1.2412 -2.0786 -6.0649 29 1 0.4792 -3.5686 -4.3104 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.7639 -0.1654 2.1372 34 1 1.6049 -1.7245 1.2923 35 1 4.0045 0.1528 1.1022 36 1 3.9380 -1.3391 2.0704 37 1 2.5375 -3.1194 0.5374 38 1 4.6381 -6.6155 -1.8093 39 1 1.0310 -8.0661 1.5291 40 1 -0.0963 -7.2884 0.3865 41 1 0.3565 -8.9315 -1.3182 42 1 0.1087 -9.8494 0.1869 43 1 2.0987 -10.7071 -0.9649 44 1 2.5987 -9.8753 0.5276 45 1 3.9921 0.0062 -1.4287 46 1 3.6599 -1.5675 -2.1940 47 1 2.9888 -0.6418 -4.7805 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071676475.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:23 Heat of formation + Delta-G solvation = 34.709816 kcal Electronic energy + Delta-G solvation = -30286.517300 eV Core-core repulsion = 26279.287358 eV Total energy + Delta-G solvation = -4007.229941 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.77731 -39.44062 -38.45468 -37.29130 -34.85882 -34.03333 -32.65385 -31.38371 -30.27208 -29.78343 -29.38044 -26.79990 -26.04456 -24.91988 -23.92387 -22.69801 -22.08379 -20.44805 -20.12131 -19.83534 -18.62960 -18.32872 -16.82759 -16.29307 -16.21479 -15.75382 -15.51571 -15.10004 -15.03473 -14.71034 -14.42397 -14.09002 -13.91047 -13.76048 -13.50260 -13.27202 -13.00400 -12.82202 -12.55845 -12.42142 -11.98493 -11.76191 -11.61658 -11.48204 -11.15480 -11.09535 -10.88933 -10.82469 -10.72090 -10.62757 -10.31633 -10.26084 -9.88667 -9.60839 -9.40747 -9.35458 -9.11126 -8.40885 -8.35828 -8.27263 -6.50342 -5.66344 -3.10123 1.55190 2.09640 2.32613 2.82655 3.44315 3.51488 3.52379 3.70858 3.87384 3.97522 4.06532 4.43608 4.48318 4.58479 4.79174 4.85162 5.00444 5.11900 5.36011 5.39144 5.42473 5.44133 5.48268 5.59101 5.62158 5.68662 5.94084 5.99913 6.09140 6.19484 6.22354 6.40279 6.42227 6.48664 6.52891 6.60859 6.69081 6.76412 6.97548 7.11900 7.17582 7.20293 7.42174 7.49675 7.77954 7.92540 8.21364 8.58421 8.82216 9.32621 9.97057 10.53341 11.41854 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011363 B = 0.004189 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.472965 B = 6682.472286 C = 7437.939906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.166 3.834 3 H 0.025 0.975 4 C -0.132 4.132 5 C -0.118 4.118 6 C 0.117 3.883 7 H 0.078 0.922 8 N -0.682 5.682 9 C 0.597 3.403 10 O -0.531 6.531 11 C 0.066 3.934 12 C -0.226 4.226 13 C 0.256 3.744 14 N -0.398 5.398 15 N -0.242 5.242 16 C 0.129 3.871 17 C -0.176 4.176 18 C 0.050 3.950 19 O -0.287 6.287 20 C 0.162 3.838 21 N -0.582 5.582 22 C -0.248 4.248 23 H 0.066 0.934 24 C 0.008 3.992 25 N -0.899 5.899 26 Si 0.894 3.106 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.036 0.964 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.052 0.948 37 H 0.402 0.598 38 H 0.165 0.835 39 H 0.089 0.911 40 H 0.104 0.896 41 H 0.090 0.910 42 H 0.109 0.891 43 H 0.118 0.882 44 H 0.071 0.929 45 H 0.027 0.973 46 H 0.096 0.904 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.975 -15.495 12.603 20.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.060 3.940 3 H 0.042 0.958 4 C -0.171 4.171 5 C -0.156 4.156 6 C 0.011 3.989 7 H 0.096 0.904 8 N -0.333 5.333 9 C 0.379 3.621 10 O -0.406 6.406 11 C -0.102 4.102 12 C -0.255 4.255 13 C 0.091 3.909 14 N -0.196 5.196 15 N -0.072 5.072 16 C 0.009 3.991 17 C -0.214 4.214 18 C -0.026 4.026 19 O -0.194 6.194 20 C 0.036 3.964 21 N -0.305 5.305 22 C -0.378 4.378 23 H 0.083 0.917 24 C -0.191 4.191 25 N -0.543 5.543 26 Si 0.725 3.275 27 H -0.211 1.211 28 H -0.216 1.216 29 H -0.213 1.213 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.238 0.762 38 H 0.182 0.818 39 H 0.107 0.893 40 H 0.122 0.878 41 H 0.109 0.891 42 H 0.128 0.872 43 H 0.136 0.864 44 H 0.090 0.910 45 H 0.045 0.955 46 H 0.114 0.886 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.033 -15.115 12.539 19.872 hybrid contribution -0.625 -1.086 -0.915 1.551 sum -3.658 -16.200 11.624 20.272 Atomic orbital electron populations 1.21788 0.96204 1.01206 1.00078 1.20446 0.92827 0.93591 0.87168 0.95787 1.22081 0.95187 1.00797 0.99054 1.21687 0.97039 1.00112 0.96758 1.21863 0.97093 0.81469 0.98460 0.90353 1.45718 1.29170 1.08114 1.50270 1.16751 0.83686 0.81698 0.79921 1.90782 1.24710 1.83917 1.41197 1.22189 0.94173 0.95583 0.98269 1.20221 1.04708 0.88901 1.11713 1.19393 0.90945 0.85144 0.95415 1.49260 1.21682 1.06983 1.41643 1.77606 1.16794 0.89374 1.23444 1.21911 0.89185 0.90063 0.97965 1.22644 0.98711 0.96924 1.03167 1.23082 0.89380 0.92948 0.97142 1.86653 1.64747 1.12317 1.55695 1.21174 0.83802 0.97087 0.94373 1.44010 1.02646 1.64771 1.19091 1.18998 0.95025 1.37783 0.86003 0.91687 1.25025 0.97754 0.99395 0.96929 1.69972 1.23947 1.43548 1.16795 0.86498 0.79523 0.80405 0.81098 1.21073 1.21638 1.21286 0.94487 0.92088 0.92982 0.92892 0.92568 0.91000 0.92975 0.76250 0.81785 0.89306 0.87821 0.89144 0.87226 0.86382 0.91024 0.95502 0.88626 0.93649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 7.95 37.16 0.30 -2.23 16 2 C 0.17 3.37 3.49 -67.60 -0.24 3.13 16 3 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.19 5.21 -26.61 -0.14 -2.33 16 5 C -0.12 -1.93 5.59 -26.69 -0.15 -2.08 16 6 C 0.12 2.31 2.81 -67.81 -0.19 2.12 16 7 H 0.08 1.56 7.58 -51.93 -0.39 1.17 16 8 N -0.68 -13.42 4.91 -54.67 -0.27 -13.69 16 9 C 0.60 12.60 7.79 -12.39 -0.10 12.51 16 10 O -0.53 -12.63 16.56 5.30 0.09 -12.54 16 11 C 0.07 1.26 7.10 -82.71 -0.59 0.67 16 12 C -0.23 -3.95 10.58 -39.62 -0.42 -4.37 16 13 C 0.26 3.84 7.57 -16.72 -0.13 3.72 16 14 N -0.40 -5.63 4.08 -60.93 -0.25 -5.87 16 15 N -0.24 -4.20 12.32 33.43 0.41 -3.79 16 16 C 0.13 1.12 7.41 -3.65 -0.03 1.09 16 17 C -0.18 -1.06 6.16 -26.34 -0.16 -1.22 16 18 C 0.05 0.35 7.00 37.27 0.26 0.61 16 19 O -0.29 -3.53 10.65 -19.84 -0.21 -3.74 16 20 C 0.16 3.96 4.88 -3.71 -0.02 3.94 16 21 N -0.58 -14.23 2.90 -164.77 -0.48 -14.71 16 22 C -0.25 -6.75 8.58 -15.06 -0.13 -6.88 16 23 H 0.07 1.74 6.25 -52.49 -0.33 1.41 16 24 C 0.01 0.23 4.94 -17.43 -0.09 0.14 16 25 N -0.90 -26.93 11.23 55.49 0.62 -26.31 16 26 Si 0.89 22.82 29.58 -169.99 -5.03 17.80 16 27 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 28 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 29 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 1.24 7.66 -51.93 -0.40 0.85 16 32 H 0.05 0.99 7.42 -51.93 -0.39 0.60 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.95 6.40 -51.93 -0.33 0.62 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.40 7.47 6.47 -40.82 -0.26 7.20 16 38 H 0.16 2.75 8.06 -52.49 -0.42 2.33 16 39 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.12 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.10 2.75 6.15 -51.93 -0.32 2.43 16 47 H 0.25 7.47 8.31 -40.82 -0.34 7.14 16 LS Contribution 372.62 15.07 5.62 5.62 Total: -1.00 -34.43 372.62 -8.36 -42.79 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -7.05 Total: 5.63 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: -1.81 Total: 8.82 kcal Atomic # 7 Polarization: -64.40 SS G_CDS: 0.04 Total: -64.37 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: -0.12 Total: -16.28 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.03 Total: 17.80 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.43 -8.36 -42.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071676475.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.497 kcal (2) G-P(sol) polarization free energy of solvation -34.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds