Wall clock time and date at job start Tue Mar 31 2020 19:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.59085 * 2 1 4 4 C 1.53193 * 109.58433 * 120.28086 * 2 1 3 5 5 C 1.53041 * 109.31300 * 174.56357 * 4 2 1 6 6 C 1.53044 * 109.53884 * 298.63377 * 5 4 2 7 7 H 1.08998 * 109.49701 * 181.34645 * 6 5 4 8 8 N 1.46497 * 109.49704 * 301.41588 * 6 5 4 9 9 C 1.34771 * 119.99896 * 204.99787 * 8 6 5 10 10 O 1.21569 * 120.00165 * 0.02562 * 9 8 6 11 11 C 1.47721 * 120.00208 * 179.97438 * 9 8 6 12 12 C 1.41295 * 125.95432 * 179.71906 * 11 9 8 13 13 C 1.34860 * 107.70679 * 179.79401 * 12 11 9 14 14 N 1.36393 * 107.92122 * 0.51871 * 13 12 11 15 15 N 1.32123 * 125.94930 * 0.02941 * 11 9 8 16 16 C 1.46723 * 123.62081 * 179.52544 * 14 13 12 17 17 C 1.53526 * 107.96397 * 343.06530 * 16 14 13 18 18 C 1.53227 * 109.30247 * 47.26855 * 17 16 14 19 19 O 1.36031 * 128.63409 * 180.33655 * 13 12 11 20 20 C 1.53191 * 109.30755 * 61.36274 * 6 5 4 21 21 N 1.46917 * 109.70402 * 239.63746 * 2 1 3 22 22 C 1.36945 * 120.63269 * 6.51524 * 21 2 1 23 23 H 1.07999 * 119.99653 * 330.19743 * 22 21 2 24 24 C 1.38810 * 120.00178 * 150.19385 * 22 21 2 25 25 N 1.31620 * 119.99942 * 344.48884 * 24 22 21 26 26 Si 1.86795 * 119.99872 * 164.48482 * 24 22 21 27 27 H 1.48497 * 109.47152 * 60.00445 * 26 24 22 28 28 H 1.48507 * 109.47028 * 180.02562 * 26 24 22 29 29 H 1.48494 * 109.47373 * 300.00024 * 26 24 22 30 30 H 1.09000 * 109.47021 * 300.00230 * 1 2 3 31 31 H 1.08996 * 109.46860 * 60.00275 * 1 2 3 32 32 H 1.08996 * 109.46920 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.50293 * 294.51312 * 4 2 1 34 34 H 1.08997 * 109.49933 * 54.61186 * 4 2 1 35 35 H 1.09001 * 109.45644 * 58.65504 * 5 4 2 36 36 H 1.09001 * 109.46009 * 178.61472 * 5 4 2 37 37 H 0.96997 * 120.00285 * 24.99505 * 8 6 5 38 38 H 1.07997 * 126.14153 * 359.92570 * 12 11 9 39 39 H 1.09000 * 109.75841 * 102.69318 * 16 14 13 40 40 H 1.09007 * 109.76466 * 223.45299 * 16 14 13 41 41 H 1.09001 * 109.49961 * 287.32310 * 17 16 14 42 42 H 1.08997 * 109.52746 * 167.23902 * 17 16 14 43 43 H 1.09001 * 109.50308 * 175.45667 * 18 17 16 44 44 H 1.09001 * 109.53403 * 55.35849 * 18 17 16 45 45 H 1.09006 * 109.58889 * 65.15964 * 20 6 5 46 46 H 1.09004 * 109.58178 * 185.43292 * 20 6 5 47 47 H 0.97005 * 119.99905 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7278 1.2464 5 6 3.5678 -0.8434 1.1730 6 6 3.9604 -1.6610 -0.0597 7 1 5.0449 -1.7631 -0.0983 8 7 3.3465 -2.9888 0.0184 9 6 3.9059 -4.0290 -0.6308 10 8 4.9201 -3.8656 -1.2808 11 6 3.2872 -5.3681 -0.5515 12 6 3.7614 -6.5397 -1.1831 13 6 2.9243 -7.5468 -0.8611 14 7 1.9429 -7.0377 -0.0625 15 7 2.1909 -5.6777 0.1177 16 6 0.8399 -7.8387 0.4803 17 6 0.7591 -9.1419 -0.3273 18 6 2.1625 -9.7420 -0.4624 19 8 2.9855 -8.8539 -1.2329 20 6 3.4685 -0.9437 -1.3209 21 7 2.0254 -0.6991 -1.1934 22 6 1.1585 -1.1154 -2.1684 23 1 0.1447 -1.3842 -1.9107 24 6 1.5827 -1.1917 -3.4879 25 7 2.6925 -0.5888 -3.8583 26 14 0.5784 -2.1500 -4.7379 27 1 -0.7832 -1.5650 -4.8321 28 1 1.2412 -2.0786 -6.0649 29 1 0.4792 -3.5686 -4.3104 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.7639 -0.1654 2.1372 34 1 1.6049 -1.7245 1.2923 35 1 4.0045 0.1528 1.1022 36 1 3.9380 -1.3391 2.0704 37 1 2.5375 -3.1194 0.5374 38 1 4.6381 -6.6155 -1.8093 39 1 1.0310 -8.0661 1.5291 40 1 -0.0963 -7.2884 0.3865 41 1 0.3565 -8.9315 -1.3182 42 1 0.1087 -9.8494 0.1869 43 1 2.0987 -10.7071 -0.9649 44 1 2.5987 -9.8753 0.5276 45 1 3.9921 0.0062 -1.4287 46 1 3.6599 -1.5675 -2.1940 47 1 2.9888 -0.6418 -4.7805 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071676475.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:22 Heat of formation + Delta-G solvation = 9.108617 kcal Electronic energy + Delta-G solvation = -30287.627451 eV Core-core repulsion = 26279.287358 eV Total energy + Delta-G solvation = -4008.340093 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.90361 -40.97303 -39.61602 -38.89976 -35.80646 -35.67103 -34.50788 -32.70000 -31.77282 -31.45600 -30.57182 -28.02268 -27.42949 -26.70224 -25.09090 -23.95311 -23.71812 -22.08877 -21.40439 -20.84888 -20.33392 -19.49410 -18.23718 -17.82332 -17.42368 -17.07266 -16.80079 -16.60958 -16.09913 -16.02576 -15.82801 -15.59947 -15.50265 -15.10484 -15.00157 -14.68785 -14.43205 -14.29857 -14.02007 -13.66885 -13.37926 -12.98326 -12.87163 -12.64927 -12.61822 -12.57653 -12.44238 -12.40145 -12.13592 -12.13374 -12.08839 -11.87413 -11.56495 -11.29941 -11.14177 -11.03783 -10.51083 -10.30584 -9.94167 -9.60488 -8.54634 -7.81209 -5.25753 0.22077 1.01830 1.08392 1.36589 1.42018 1.45683 1.84655 2.26358 2.46078 2.50326 3.04423 3.34475 3.52579 3.58066 3.65582 3.94060 3.97045 4.04739 4.12192 4.19454 4.23012 4.29487 4.43281 4.50610 4.52231 4.57635 4.66018 4.69401 4.75740 4.83312 4.91060 4.97769 5.03638 5.06685 5.09474 5.12908 5.24655 5.28050 5.34651 5.57686 5.62248 5.66772 5.74655 5.75687 6.16455 6.18512 6.46037 6.64713 7.20374 7.22164 7.94890 8.45376 9.23938 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011363 B = 0.004189 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.472965 B = 6682.472286 C = 7437.939906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.155 3.845 3 H 0.018 0.982 4 C -0.121 4.121 5 C -0.109 4.109 6 C 0.124 3.876 7 H 0.073 0.927 8 N -0.674 5.674 9 C 0.591 3.409 10 O -0.571 6.571 11 C 0.040 3.960 12 C -0.261 4.261 13 C 0.274 3.726 14 N -0.385 5.385 15 N -0.251 5.251 16 C 0.111 3.889 17 C -0.166 4.166 18 C 0.035 3.965 19 O -0.299 6.299 20 C 0.172 3.828 21 N -0.595 5.595 22 C -0.236 4.236 23 H 0.071 0.929 24 C -0.051 4.051 25 N -0.933 5.933 26 Si 0.946 3.054 27 H -0.268 1.268 28 H -0.299 1.299 29 H -0.292 1.292 30 H 0.077 0.923 31 H 0.035 0.965 32 H 0.047 0.953 33 H 0.092 0.908 34 H 0.056 0.944 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.409 0.591 38 H 0.156 0.844 39 H 0.118 0.882 40 H 0.111 0.889 41 H 0.077 0.923 42 H 0.156 0.844 43 H 0.150 0.850 44 H 0.088 0.912 45 H 0.004 0.996 46 H 0.045 0.955 47 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.489 -17.685 15.858 24.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.050 3.950 3 H 0.036 0.964 4 C -0.160 4.160 5 C -0.147 4.147 6 C 0.018 3.982 7 H 0.091 0.909 8 N -0.324 5.324 9 C 0.375 3.625 10 O -0.449 6.449 11 C -0.127 4.127 12 C -0.291 4.291 13 C 0.106 3.894 14 N -0.184 5.184 15 N -0.082 5.082 16 C -0.007 4.007 17 C -0.204 4.204 18 C -0.038 4.038 19 O -0.206 6.206 20 C 0.045 3.955 21 N -0.319 5.319 22 C -0.366 4.366 23 H 0.089 0.911 24 C -0.246 4.246 25 N -0.580 5.580 26 Si 0.776 3.224 27 H -0.193 1.193 28 H -0.226 1.226 29 H -0.219 1.219 30 H 0.095 0.905 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.111 0.889 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.246 0.754 38 H 0.173 0.827 39 H 0.136 0.864 40 H 0.129 0.871 41 H 0.096 0.904 42 H 0.174 0.826 43 H 0.168 0.832 44 H 0.106 0.894 45 H 0.022 0.978 46 H 0.064 0.936 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -5.608 -17.316 15.853 24.138 hybrid contribution 0.057 -0.538 -1.839 1.917 sum -5.551 -17.855 14.014 23.367 Atomic orbital electron populations 1.21714 0.94830 1.01112 1.00849 1.20764 0.94085 0.93321 0.86859 0.96388 1.21970 0.94862 1.00824 0.98296 1.21673 0.97214 1.00071 0.95772 1.21665 0.96711 0.81700 0.98108 0.90902 1.45644 1.29214 1.07664 1.49835 1.17156 0.83310 0.82876 0.79154 1.90741 1.26532 1.84819 1.42826 1.21839 0.95537 0.94890 1.00403 1.20266 1.05899 0.89763 1.13173 1.19216 0.90083 0.86037 0.94041 1.49702 1.22198 1.06041 1.40478 1.77470 1.15955 0.91506 1.23307 1.22571 0.87697 0.90527 0.99916 1.22695 0.98770 0.96259 1.02673 1.23630 0.89268 0.92945 0.97997 1.86677 1.66064 1.11236 1.56662 1.20850 0.84236 0.95506 0.94931 1.44230 1.02207 1.65494 1.19952 1.19306 0.95351 1.35589 0.86398 0.91113 1.25679 0.98984 1.01135 0.98848 1.70135 1.25812 1.45822 1.16270 0.85653 0.79021 0.78871 0.78868 1.19334 1.22588 1.21934 0.90464 0.94597 0.93416 0.88910 0.92498 0.90167 0.89632 0.75400 0.82664 0.86418 0.87102 0.90416 0.82575 0.83212 0.89364 0.97772 0.93649 0.94777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.49 7.95 71.98 0.57 -3.92 16 2 C 0.15 6.04 3.49 44.98 0.16 6.20 16 3 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 4 C -0.12 -3.61 5.21 30.67 0.16 -3.45 16 5 C -0.11 -3.32 5.59 30.62 0.17 -3.15 16 6 C 0.12 4.99 2.81 45.07 0.13 5.11 16 7 H 0.07 3.01 7.58 -2.39 -0.02 2.99 16 8 N -0.67 -26.87 4.91 -445.16 -2.19 -29.06 16 9 C 0.59 26.15 7.79 86.75 0.68 26.83 16 10 O -0.57 -29.10 16.56 -3.93 -0.07 -29.16 16 11 C 0.04 1.56 7.10 42.36 0.30 1.86 16 12 C -0.26 -9.51 10.58 22.25 0.24 -9.28 16 13 C 0.27 8.04 7.57 83.21 0.63 8.67 16 14 N -0.39 -10.27 4.08 -457.17 -1.87 -12.13 16 15 N -0.25 -8.58 12.32 -48.15 -0.59 -9.18 16 16 C 0.11 1.53 7.41 86.51 0.64 2.17 16 17 C -0.17 -1.30 6.16 30.85 0.19 -1.11 16 18 C 0.04 0.36 7.00 72.06 0.50 0.86 16 19 O -0.30 -6.85 10.65 -93.90 -1.00 -7.85 16 20 C 0.17 8.78 4.88 86.36 0.42 9.20 16 21 N -0.60 -29.56 2.90 -675.22 -1.96 -31.52 16 22 C -0.24 -13.06 8.58 84.03 0.72 -12.34 16 23 H 0.07 3.79 6.25 -2.91 -0.02 3.77 16 24 C -0.05 -3.04 4.94 84.86 0.42 -2.62 16 25 N -0.93 -59.04 11.23 21.65 0.24 -58.80 16 26 Si 0.95 48.45 29.58 68.60 2.03 50.48 16 27 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 28 H -0.30 -15.62 7.11 99.48 0.71 -14.92 16 29 H -0.29 -15.07 7.11 99.48 0.71 -14.36 16 30 H 0.08 2.09 8.14 -2.39 -0.02 2.08 16 31 H 0.03 1.42 7.66 -2.39 -0.02 1.40 16 32 H 0.05 1.70 7.42 -2.39 -0.02 1.69 16 33 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.06 1.73 6.40 -2.39 -0.02 1.71 16 35 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.41 14.93 6.47 -92.71 -0.60 14.33 16 38 H 0.16 5.68 8.06 -2.91 -0.02 5.65 16 39 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16 41 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.16 -0.15 8.14 -2.39 -0.02 -0.17 16 43 H 0.15 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.00 0.24 8.14 -2.38 -0.02 0.22 16 46 H 0.04 2.79 6.15 -2.38 -0.01 2.77 16 47 H 0.24 15.24 8.31 -92.70 -0.77 14.47 16 Total: -1.00 -81.85 372.62 0.92 -80.93 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 0.39 Total: 21.24 kcal Atomic # 6 Polarization: 19.12 SS G_CDS: 5.93 Total: 25.05 kcal Atomic # 7 Polarization: -134.33 SS G_CDS: -6.36 Total: -140.69 kcal Atomic # 8 Polarization: -35.95 SS G_CDS: -1.07 Total: -37.01 kcal Atomic # 14 Polarization: 48.45 SS G_CDS: 2.03 Total: 50.48 kcal Total: -81.85 0.92 -80.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071676475.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.042 kcal (2) G-P(sol) polarization free energy of solvation -81.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds