Wall clock time and date at job start Tue Mar 31 2020 19:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.70248 * 2 1 4 4 C 1.53192 * 109.58622 * 239.64513 * 2 1 3 5 5 C 1.53040 * 109.33834 * 185.56013 * 4 2 1 6 6 C 1.53104 * 109.50409 * 61.35162 * 5 4 2 7 7 H 1.09000 * 109.49004 * 58.60961 * 6 5 4 8 8 N 1.46498 * 109.51604 * 178.68635 * 6 5 4 9 9 C 1.34783 * 119.99553 * 204.86911 * 8 6 5 10 10 O 1.21574 * 120.00220 * 359.97438 * 9 8 6 11 11 C 1.47720 * 119.99724 * 179.97438 * 9 8 6 12 12 C 1.41293 * 125.95258 * 180.02562 * 11 9 8 13 13 C 1.34864 * 107.70642 * 179.97438 * 12 11 9 14 14 N 1.36394 * 107.92293 * 0.08738 * 13 12 11 15 15 N 1.32125 * 125.95176 * 359.68799 * 11 9 8 16 16 C 1.46720 * 123.62324 * 179.80498 * 14 13 12 17 17 C 1.53530 * 107.95471 * 343.03309 * 16 14 13 18 18 C 1.53230 * 109.30017 * 47.30029 * 17 16 14 19 19 O 1.36025 * 128.63227 * 180.20927 * 13 12 11 20 20 C 1.53197 * 109.32770 * 298.65865 * 6 5 4 21 21 N 1.46918 * 108.78090 * 54.63282 * 20 6 5 22 22 C 1.36934 * 120.63330 * 126.41018 * 21 20 6 23 23 H 1.07997 * 120.00083 * 209.03691 * 22 21 20 24 24 C 1.38818 * 120.00008 * 29.03909 * 22 21 20 25 25 N 1.31620 * 119.99342 * 15.05203 * 24 22 21 26 26 Si 1.86795 * 120.00018 * 195.05059 * 24 22 21 27 27 H 1.48499 * 109.47304 * 60.00127 * 26 24 22 28 28 H 1.48506 * 109.46600 * 179.97438 * 26 24 22 29 29 H 1.48496 * 109.47518 * 299.99835 * 26 24 22 30 30 H 1.08998 * 109.47080 * 180.35228 * 1 2 3 31 31 H 1.08997 * 109.47262 * 300.35245 * 1 2 3 32 32 H 1.08999 * 109.46886 * 60.35803 * 1 2 3 33 33 H 1.08996 * 109.49839 * 305.52819 * 4 2 1 34 34 H 1.09003 * 109.49570 * 65.59303 * 4 2 1 35 35 H 1.09001 * 109.45860 * 181.40292 * 5 4 2 36 36 H 1.08999 * 109.46412 * 301.36373 * 5 4 2 37 37 H 0.96994 * 120.00338 * 24.86849 * 8 6 5 38 38 H 1.07994 * 126.14254 * 359.93475 * 12 11 9 39 39 H 1.08994 * 109.77115 * 102.65164 * 16 14 13 40 40 H 1.09000 * 109.76260 * 223.37459 * 16 14 13 41 41 H 1.08998 * 109.49892 * 167.24434 * 17 16 14 42 42 H 1.08999 * 109.50508 * 287.35204 * 17 16 14 43 43 H 1.08997 * 109.50236 * 55.34132 * 18 17 16 44 44 H 1.08995 * 109.50441 * 175.45583 * 18 17 16 45 45 H 1.09000 * 109.58311 * 294.84410 * 20 6 5 46 46 H 1.09005 * 109.70594 * 174.49647 * 20 6 5 47 47 H 0.97004 * 119.99493 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2454 5 6 3.5676 -0.8479 -1.1710 6 6 3.9570 -1.6657 0.0634 7 1 3.4983 -2.6528 0.0052 8 7 5.4142 -1.8059 0.1178 9 6 5.9670 -2.8475 0.7707 10 8 5.2564 -3.6702 1.3149 11 6 7.4364 -2.9892 0.8251 12 6 8.1464 -4.0262 1.4707 13 6 9.4630 -3.7960 1.2903 14 7 9.5926 -2.6526 0.5580 15 7 8.3155 -2.1717 0.2733 16 6 10.8859 -2.0813 0.1658 17 6 11.9700 -2.7125 1.0509 18 6 11.7714 -4.2313 1.0896 19 8 10.5212 -4.5297 1.7285 20 6 3.4650 -0.9470 1.3237 21 7 2.0226 -0.6996 1.1945 22 6 1.1538 -1.1128 2.1689 23 1 0.1361 -1.3676 1.9124 24 6 1.5810 -1.2041 3.4866 25 7 2.7038 -0.6249 3.8558 26 14 0.5626 -2.1489 4.7353 27 1 0.4341 -3.5631 4.3010 28 1 1.2315 -2.0972 6.0602 29 1 -0.7870 -1.5379 4.8374 30 1 -0.3633 -1.0276 0.0063 31 1 -0.3633 0.5193 0.8868 32 1 -0.3633 0.5083 -0.8932 33 1 1.6030 -1.7253 -1.2913 34 1 1.7655 -0.1671 -2.1369 35 1 3.9374 -1.3445 -2.0680 36 1 4.0062 0.1474 -1.1001 37 1 5.9812 -1.1493 -0.3160 38 1 7.7127 -4.8541 2.0119 39 1 11.0867 -2.3080 -0.8812 40 1 10.8715 -1.0014 0.3128 41 1 12.9535 -2.4846 0.6398 42 1 11.8952 -2.3099 2.0610 43 1 11.7629 -4.6233 0.0726 44 1 12.5854 -4.6906 1.6504 45 1 3.9903 0.0020 1.4316 46 1 3.6521 -1.5697 2.1986 47 1 3.0026 -0.6890 4.7765 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071676479.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:29 Heat of formation + Delta-G solvation = 33.152559 kcal Electronic energy + Delta-G solvation = -29313.740112 eV Core-core repulsion = 25306.442643 eV Total energy + Delta-G solvation = -4007.297469 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.91273 -39.47327 -38.48727 -37.38453 -34.97947 -34.32533 -32.74219 -31.45866 -30.35404 -29.74069 -29.51284 -26.93757 -25.89565 -24.96144 -23.91595 -22.71257 -22.10641 -20.45855 -20.22111 -19.72932 -19.18117 -18.28355 -16.88929 -16.40195 -16.33454 -15.84127 -15.65910 -15.19736 -15.14437 -14.85208 -14.54077 -14.07488 -13.90670 -13.70650 -13.58438 -13.28924 -13.26882 -12.79698 -12.61850 -12.30462 -12.04408 -11.80170 -11.71530 -11.59406 -11.37217 -11.05096 -10.89982 -10.81379 -10.61866 -10.44607 -10.33075 -10.19279 -9.90737 -9.79041 -9.42727 -9.37844 -9.25027 -8.54166 -8.44386 -8.32430 -6.52753 -5.64877 -3.09596 1.39038 1.95568 2.18872 2.71470 3.48462 3.55601 3.56129 3.57763 3.74807 3.77662 3.95697 4.32879 4.36640 4.61412 4.68343 4.73981 4.89605 4.99642 5.24787 5.29634 5.38929 5.42965 5.45615 5.59219 5.66193 5.77339 5.82901 5.86900 6.04727 6.19473 6.34397 6.34617 6.40827 6.46355 6.52415 6.58210 6.70581 6.82705 7.00536 7.05248 7.11375 7.19834 7.29305 7.43589 7.84980 7.93861 8.03615 8.58593 8.66486 9.33372 9.97796 10.53049 11.43026 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015510 B = 0.002968 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.881375 B = 9430.558506 C =10648.027213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.116 3.884 7 H 0.084 0.916 8 N -0.704 5.704 9 C 0.594 3.406 10 O -0.515 6.515 11 C 0.064 3.936 12 C -0.225 4.225 13 C 0.258 3.742 14 N -0.397 5.397 15 N -0.247 5.247 16 C 0.129 3.871 17 C -0.176 4.176 18 C 0.049 3.951 19 O -0.286 6.286 20 C 0.167 3.833 21 N -0.583 5.583 22 C -0.253 4.253 23 H 0.070 0.930 24 C 0.006 3.994 25 N -0.900 5.900 26 Si 0.901 3.099 27 H -0.282 1.282 28 H -0.291 1.291 29 H -0.284 1.284 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.037 0.963 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.399 0.601 38 H 0.166 0.834 39 H 0.089 0.911 40 H 0.104 0.896 41 H 0.110 0.890 42 H 0.090 0.910 43 H 0.072 0.928 44 H 0.119 0.881 45 H 0.017 0.983 46 H 0.097 0.903 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.853 -2.557 -10.912 22.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.166 4.166 5 C -0.154 4.154 6 C 0.011 3.989 7 H 0.102 0.898 8 N -0.354 5.354 9 C 0.376 3.624 10 O -0.387 6.387 11 C -0.104 4.104 12 C -0.254 4.254 13 C 0.093 3.907 14 N -0.195 5.195 15 N -0.078 5.078 16 C 0.008 3.992 17 C -0.214 4.214 18 C -0.026 4.026 19 O -0.193 6.193 20 C 0.040 3.960 21 N -0.306 5.306 22 C -0.383 4.383 23 H 0.087 0.913 24 C -0.193 4.193 25 N -0.544 5.544 26 Si 0.731 3.269 27 H -0.209 1.209 28 H -0.217 1.217 29 H -0.210 1.210 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.232 0.768 38 H 0.184 0.816 39 H 0.107 0.893 40 H 0.122 0.878 41 H 0.128 0.872 42 H 0.109 0.891 43 H 0.090 0.910 44 H 0.137 0.863 45 H 0.035 0.965 46 H 0.115 0.885 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 19.667 -2.276 -10.845 22.574 hybrid contribution 0.229 -0.645 0.858 1.098 sum 19.896 -2.921 -9.987 22.453 Atomic orbital electron populations 1.21798 0.96023 1.01430 1.00105 1.20493 0.93029 0.93571 0.87106 0.95771 1.22047 0.94279 1.01339 0.98890 1.21688 0.97361 0.99706 0.96674 1.22075 0.77256 1.01094 0.98451 0.89762 1.45937 1.08802 1.26211 1.54449 1.16821 0.83829 0.82241 0.79489 1.90856 1.60909 1.42381 1.44603 1.22206 0.94569 0.94543 0.99064 1.20258 0.87682 1.05028 1.12454 1.19408 0.89373 0.86080 0.95860 1.49263 1.06037 1.19769 1.44455 1.77566 0.86025 1.21097 1.23078 1.21928 0.77378 1.00286 0.99564 1.22647 0.99998 0.96248 1.02517 1.23101 0.84685 0.95394 0.99439 1.86665 1.15375 1.57245 1.60011 1.21106 0.83490 0.97023 0.94368 1.44013 1.02637 1.64726 1.19266 1.19094 0.94688 1.38375 0.86126 0.91253 1.25076 0.97722 0.99460 0.97030 1.69989 1.23274 1.44246 1.16914 0.86394 0.79378 0.80428 0.80700 1.20885 1.21711 1.21040 0.92756 0.92045 0.94396 0.92027 0.92705 0.93003 0.92225 0.76750 0.81636 0.89254 0.87818 0.87168 0.89117 0.90966 0.86276 0.96463 0.88526 0.93687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 7.94 37.16 0.30 -2.31 16 2 C 0.16 3.45 3.50 -67.60 -0.24 3.21 16 3 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 4 C -0.13 -2.20 5.37 -26.61 -0.14 -2.34 16 5 C -0.12 -1.96 5.36 -26.66 -0.14 -2.10 16 6 C 0.12 2.37 2.60 -67.78 -0.18 2.19 16 7 H 0.08 1.91 7.58 -51.93 -0.39 1.52 16 8 N -0.70 -12.83 5.08 -54.64 -0.28 -13.11 16 9 C 0.59 11.77 7.79 -12.38 -0.10 11.68 16 10 O -0.51 -12.16 16.56 5.30 0.09 -12.07 16 11 C 0.06 1.10 7.10 -82.71 -0.59 0.51 16 12 C -0.22 -3.58 10.58 -39.62 -0.42 -4.00 16 13 C 0.26 3.46 7.57 -16.72 -0.13 3.33 16 14 N -0.40 -4.88 4.08 -60.93 -0.25 -5.13 16 15 N -0.25 -3.74 12.32 33.43 0.41 -3.33 16 16 C 0.13 0.89 7.41 -3.65 -0.03 0.86 16 17 C -0.18 -0.79 6.16 -26.34 -0.16 -0.95 16 18 C 0.05 0.28 7.00 37.28 0.26 0.54 16 19 O -0.29 -3.13 10.65 -19.82 -0.21 -3.34 16 20 C 0.17 4.18 4.87 -3.71 -0.02 4.16 16 21 N -0.58 -14.84 2.99 -164.77 -0.49 -15.34 16 22 C -0.25 -7.06 8.61 -15.06 -0.13 -7.19 16 23 H 0.07 1.87 6.20 -52.49 -0.33 1.55 16 24 C 0.01 0.18 4.96 -17.43 -0.09 0.09 16 25 N -0.90 -27.26 11.14 55.49 0.62 -26.65 16 26 Si 0.90 22.83 29.58 -169.99 -5.03 17.81 16 27 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 28 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 29 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 30 H 0.05 1.05 7.40 -51.93 -0.38 0.67 16 31 H 0.06 1.27 7.66 -51.93 -0.40 0.87 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.40 6.25 8.30 -40.82 -0.34 5.91 16 38 H 0.17 2.58 8.06 -52.49 -0.42 2.15 16 39 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.11 0.13 8.14 -51.93 -0.42 -0.29 16 42 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.12 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.10 2.84 6.06 -51.93 -0.31 2.53 16 47 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 375.95 15.07 5.67 5.67 Total: -1.00 -35.18 375.95 -8.48 -43.66 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -7.21 Total: 4.13 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: -1.80 Total: 7.70 kcal Atomic # 7 Polarization: -63.56 SS G_CDS: 0.01 Total: -63.55 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.12 Total: -15.41 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.03 Total: 17.81 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.18 -8.48 -43.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071676479.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.814 kcal (2) G-P(sol) polarization free energy of solvation -35.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds