Wall clock time and date at job start Tue Mar 31 2020 19:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.70248 * 2 1 4 4 C 1.53192 * 109.58622 * 239.64513 * 2 1 3 5 5 C 1.53040 * 109.33834 * 185.56013 * 4 2 1 6 6 C 1.53104 * 109.50409 * 61.35162 * 5 4 2 7 7 H 1.09000 * 109.49004 * 58.60961 * 6 5 4 8 8 N 1.46498 * 109.51604 * 178.68635 * 6 5 4 9 9 C 1.34783 * 119.99553 * 204.86911 * 8 6 5 10 10 O 1.21574 * 120.00220 * 359.97438 * 9 8 6 11 11 C 1.47720 * 119.99724 * 179.97438 * 9 8 6 12 12 C 1.41293 * 125.95258 * 180.02562 * 11 9 8 13 13 C 1.34864 * 107.70642 * 179.97438 * 12 11 9 14 14 N 1.36394 * 107.92293 * 0.08738 * 13 12 11 15 15 N 1.32125 * 125.95176 * 359.68799 * 11 9 8 16 16 C 1.46720 * 123.62324 * 179.80498 * 14 13 12 17 17 C 1.53530 * 107.95471 * 343.03309 * 16 14 13 18 18 C 1.53230 * 109.30017 * 47.30029 * 17 16 14 19 19 O 1.36025 * 128.63227 * 180.20927 * 13 12 11 20 20 C 1.53197 * 109.32770 * 298.65865 * 6 5 4 21 21 N 1.46918 * 108.78090 * 54.63282 * 20 6 5 22 22 C 1.36934 * 120.63330 * 126.41018 * 21 20 6 23 23 H 1.07997 * 120.00083 * 209.03691 * 22 21 20 24 24 C 1.38818 * 120.00008 * 29.03909 * 22 21 20 25 25 N 1.31620 * 119.99342 * 15.05203 * 24 22 21 26 26 Si 1.86795 * 120.00018 * 195.05059 * 24 22 21 27 27 H 1.48499 * 109.47304 * 60.00127 * 26 24 22 28 28 H 1.48506 * 109.46600 * 179.97438 * 26 24 22 29 29 H 1.48496 * 109.47518 * 299.99835 * 26 24 22 30 30 H 1.08998 * 109.47080 * 180.35228 * 1 2 3 31 31 H 1.08997 * 109.47262 * 300.35245 * 1 2 3 32 32 H 1.08999 * 109.46886 * 60.35803 * 1 2 3 33 33 H 1.08996 * 109.49839 * 305.52819 * 4 2 1 34 34 H 1.09003 * 109.49570 * 65.59303 * 4 2 1 35 35 H 1.09001 * 109.45860 * 181.40292 * 5 4 2 36 36 H 1.08999 * 109.46412 * 301.36373 * 5 4 2 37 37 H 0.96994 * 120.00338 * 24.86849 * 8 6 5 38 38 H 1.07994 * 126.14254 * 359.93475 * 12 11 9 39 39 H 1.08994 * 109.77115 * 102.65164 * 16 14 13 40 40 H 1.09000 * 109.76260 * 223.37459 * 16 14 13 41 41 H 1.08998 * 109.49892 * 167.24434 * 17 16 14 42 42 H 1.08999 * 109.50508 * 287.35204 * 17 16 14 43 43 H 1.08997 * 109.50236 * 55.34132 * 18 17 16 44 44 H 1.08995 * 109.50441 * 175.45583 * 18 17 16 45 45 H 1.09000 * 109.58311 * 294.84410 * 20 6 5 46 46 H 1.09005 * 109.70594 * 174.49647 * 20 6 5 47 47 H 0.97004 * 119.99493 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2454 5 6 3.5676 -0.8479 -1.1710 6 6 3.9570 -1.6657 0.0634 7 1 3.4983 -2.6528 0.0052 8 7 5.4142 -1.8059 0.1178 9 6 5.9670 -2.8475 0.7707 10 8 5.2564 -3.6702 1.3149 11 6 7.4364 -2.9892 0.8251 12 6 8.1464 -4.0262 1.4707 13 6 9.4630 -3.7960 1.2903 14 7 9.5926 -2.6526 0.5580 15 7 8.3155 -2.1717 0.2733 16 6 10.8859 -2.0813 0.1658 17 6 11.9700 -2.7125 1.0509 18 6 11.7714 -4.2313 1.0896 19 8 10.5212 -4.5297 1.7285 20 6 3.4650 -0.9470 1.3237 21 7 2.0226 -0.6996 1.1945 22 6 1.1538 -1.1128 2.1689 23 1 0.1361 -1.3676 1.9124 24 6 1.5810 -1.2041 3.4866 25 7 2.7038 -0.6249 3.8558 26 14 0.5626 -2.1489 4.7353 27 1 0.4341 -3.5631 4.3010 28 1 1.2315 -2.0972 6.0602 29 1 -0.7870 -1.5379 4.8374 30 1 -0.3633 -1.0276 0.0063 31 1 -0.3633 0.5193 0.8868 32 1 -0.3633 0.5083 -0.8932 33 1 1.6030 -1.7253 -1.2913 34 1 1.7655 -0.1671 -2.1369 35 1 3.9374 -1.3445 -2.0680 36 1 4.0062 0.1474 -1.1001 37 1 5.9812 -1.1493 -0.3160 38 1 7.7127 -4.8541 2.0119 39 1 11.0867 -2.3080 -0.8812 40 1 10.8715 -1.0014 0.3128 41 1 12.9535 -2.4846 0.6398 42 1 11.8952 -2.3099 2.0610 43 1 11.7629 -4.6233 0.0726 44 1 12.5854 -4.6906 1.6504 45 1 3.9903 0.0020 1.4316 46 1 3.6521 -1.5697 2.1986 47 1 3.0026 -0.6890 4.7765 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071676479.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:28 Heat of formation + Delta-G solvation = 6.394440 kcal Electronic energy + Delta-G solvation = -29314.900431 eV Core-core repulsion = 25306.442643 eV Total energy + Delta-G solvation = -4008.457788 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.92948 -40.93766 -39.60417 -38.99507 -36.05423 -35.67776 -34.65294 -32.70752 -31.81006 -31.47140 -30.59573 -28.02259 -27.40509 -26.66489 -24.99913 -24.05605 -23.61707 -22.06782 -21.40899 -20.91401 -20.66630 -19.40006 -18.32330 -17.83280 -17.50198 -17.17514 -16.86891 -16.63977 -16.17857 -16.00309 -15.80939 -15.58613 -15.43861 -15.12191 -15.02631 -14.88201 -14.45277 -14.31852 -14.10150 -13.50437 -13.40808 -13.05237 -12.75646 -12.68513 -12.64646 -12.54490 -12.45206 -12.27767 -12.13024 -12.11337 -11.99729 -11.88762 -11.67237 -11.47892 -11.17523 -11.09535 -10.51227 -10.34643 -10.07108 -9.62154 -8.60802 -7.82515 -5.28954 0.16439 0.99736 1.04493 1.42316 1.48836 1.52647 1.79321 2.20716 2.33374 2.53221 3.00110 3.33873 3.50764 3.56584 3.71434 3.91326 3.96504 4.01072 4.10740 4.18114 4.28186 4.30167 4.40452 4.42624 4.53069 4.57225 4.62148 4.68292 4.72954 4.82436 4.90678 4.92372 5.02756 5.04427 5.08587 5.19777 5.22431 5.29832 5.33316 5.44140 5.57287 5.63685 5.72467 5.81054 6.12341 6.16413 6.43322 6.57460 7.12745 7.19538 7.92054 8.41663 9.22547 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015510 B = 0.002968 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.881375 B = 9430.558506 C =10648.027213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.152 3.848 3 H 0.022 0.978 4 C -0.117 4.117 5 C -0.107 4.107 6 C 0.130 3.870 7 H 0.058 0.942 8 N -0.691 5.691 9 C 0.592 3.408 10 O -0.565 6.565 11 C 0.041 3.959 12 C -0.259 4.259 13 C 0.275 3.725 14 N -0.383 5.383 15 N -0.249 5.249 16 C 0.111 3.889 17 C -0.165 4.165 18 C 0.034 3.966 19 O -0.299 6.299 20 C 0.179 3.821 21 N -0.602 5.602 22 C -0.251 4.251 23 H 0.077 0.923 24 C -0.055 4.055 25 N -0.935 5.935 26 Si 0.958 3.042 27 H -0.285 1.285 28 H -0.298 1.298 29 H -0.267 1.267 30 H 0.047 0.953 31 H 0.037 0.963 32 H 0.079 0.921 33 H 0.054 0.946 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.414 0.586 38 H 0.154 0.846 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.155 0.845 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.150 0.850 45 H -0.004 1.004 46 H 0.044 0.956 47 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.935 -1.917 -13.780 25.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.047 3.953 3 H 0.039 0.961 4 C -0.156 4.156 5 C -0.145 4.145 6 C 0.024 3.976 7 H 0.076 0.924 8 N -0.342 5.342 9 C 0.376 3.624 10 O -0.442 6.442 11 C -0.125 4.125 12 C -0.289 4.289 13 C 0.107 3.893 14 N -0.182 5.182 15 N -0.080 5.080 16 C -0.007 4.007 17 C -0.203 4.203 18 C -0.040 4.040 19 O -0.206 6.206 20 C 0.052 3.948 21 N -0.326 5.326 22 C -0.381 4.381 23 H 0.095 0.905 24 C -0.250 4.250 25 N -0.581 5.581 26 Si 0.787 3.213 27 H -0.211 1.211 28 H -0.224 1.224 29 H -0.192 1.192 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.098 0.902 33 H 0.073 0.927 34 H 0.116 0.884 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.250 0.750 38 H 0.172 0.828 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.173 0.827 42 H 0.099 0.901 43 H 0.105 0.895 44 H 0.167 0.833 45 H 0.014 0.986 46 H 0.063 0.937 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 21.771 -1.600 -13.774 25.812 hybrid contribution -0.212 -0.809 1.683 1.879 sum 21.559 -2.408 -12.091 24.835 Atomic orbital electron populations 1.21729 0.94592 1.01224 1.01075 1.20830 0.94397 0.93378 0.86686 0.96059 1.21954 0.94202 1.01059 0.98394 1.21668 0.97347 0.99883 0.95642 1.21675 0.78159 0.99646 0.98105 0.92386 1.45769 1.08186 1.26223 1.54040 1.17238 0.85079 0.81683 0.78389 1.90813 1.62531 1.44194 1.46634 1.21698 0.93248 0.96171 1.01432 1.20265 0.89319 1.05325 1.14030 1.19207 0.89337 0.86177 0.94531 1.49706 1.06580 1.19035 1.42874 1.77442 0.87134 1.20691 1.22770 1.22592 0.75250 1.01163 1.01693 1.22693 1.01072 0.94758 1.01812 1.23637 0.82863 0.96884 1.00570 1.86687 1.16460 1.56972 1.60478 1.20761 0.83899 0.95277 0.94864 1.44309 1.02386 1.65627 1.20306 1.19469 0.95216 1.36745 0.86681 0.90543 1.25831 0.99054 1.01084 0.99074 1.70165 1.25141 1.46349 1.16485 0.85466 0.78664 0.78983 0.78180 1.21126 1.22440 1.19238 0.93438 0.94340 0.90198 0.92680 0.88404 0.89578 0.90939 0.74969 0.82807 0.86611 0.86645 0.82703 0.90068 0.89548 0.83275 0.98573 0.93705 0.94728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.72 7.94 71.98 0.57 -4.14 16 2 C 0.15 6.22 3.50 44.97 0.16 6.37 16 3 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 4 C -0.12 -3.75 5.37 30.67 0.16 -3.59 16 5 C -0.11 -3.39 5.36 30.64 0.16 -3.23 16 6 C 0.13 5.42 2.60 45.09 0.12 5.54 16 7 H 0.06 2.75 7.58 -2.39 -0.02 2.73 16 8 N -0.69 -26.01 5.08 -445.04 -2.26 -28.27 16 9 C 0.59 24.97 7.79 86.75 0.68 25.65 16 10 O -0.57 -28.97 16.56 -3.95 -0.07 -29.03 16 11 C 0.04 1.45 7.10 42.36 0.30 1.76 16 12 C -0.26 -8.73 10.58 22.25 0.24 -8.50 16 13 C 0.28 7.27 7.57 83.21 0.63 7.90 16 14 N -0.38 -8.84 4.08 -457.19 -1.87 -10.71 16 15 N -0.25 -7.46 12.32 -48.15 -0.59 -8.05 16 16 C 0.11 1.15 7.41 86.52 0.64 1.79 16 17 C -0.17 -0.82 6.16 30.85 0.19 -0.63 16 18 C 0.03 0.28 7.00 72.06 0.50 0.78 16 19 O -0.30 -6.13 10.65 -93.84 -1.00 -7.13 16 20 C 0.18 9.44 4.87 86.37 0.42 9.86 16 21 N -0.60 -31.49 2.99 -675.22 -2.02 -33.51 16 22 C -0.25 -14.40 8.61 84.04 0.72 -13.68 16 23 H 0.08 4.20 6.20 -2.91 -0.02 4.18 16 24 C -0.06 -3.34 4.96 84.86 0.42 -2.92 16 25 N -0.93 -59.92 11.14 21.65 0.24 -59.67 16 26 Si 0.96 48.81 29.58 68.60 2.03 50.84 16 27 H -0.28 -14.44 7.11 99.48 0.71 -13.73 16 28 H -0.30 -15.36 7.11 99.48 0.71 -14.65 16 29 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 30 H 0.05 1.78 7.40 -2.39 -0.02 1.76 16 31 H 0.04 1.55 7.66 -2.39 -0.02 1.54 16 32 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.41 12.92 8.30 -92.71 -0.77 12.15 16 38 H 0.15 5.32 8.06 -2.91 -0.02 5.30 16 39 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.16 -0.53 8.14 -2.39 -0.02 -0.55 16 42 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.15 0.33 8.14 -2.39 -0.02 0.31 16 45 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 46 H 0.04 2.83 6.06 -2.38 -0.01 2.81 16 47 H 0.24 15.39 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -84.56 375.95 0.60 -83.96 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 0.22 Total: 18.60 kcal Atomic # 6 Polarization: 17.06 SS G_CDS: 5.92 Total: 22.97 kcal Atomic # 7 Polarization: -133.72 SS G_CDS: -6.50 Total: -140.21 kcal Atomic # 8 Polarization: -35.09 SS G_CDS: -1.06 Total: -36.16 kcal Atomic # 14 Polarization: 48.81 SS G_CDS: 2.03 Total: 50.84 kcal Total: -84.56 0.60 -83.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071676479.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.353 kcal (2) G-P(sol) polarization free energy of solvation -84.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds