Wall clock time and date at job start Tue Mar 31 2020 19:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.68587 * 2 1 4 4 C 1.53135 * 109.64370 * 120.20906 * 2 1 3 5 5 C 1.53154 * 109.55870 * 169.82013 * 4 2 1 6 6 C 1.53375 * 109.22594 * 290.78816 * 5 4 2 7 7 C 1.51113 * 108.24887 * 48.83706 * 6 5 4 8 8 N 1.30549 * 127.08913 * 163.96338 * 7 6 5 9 9 C 1.33458 * 109.68508 * 180.12050 * 8 7 6 10 10 C 1.36829 * 107.83149 * 359.97438 * 9 8 7 11 11 C 1.46771 * 126.91009 * 179.97438 * 10 9 8 12 12 O 1.21679 * 119.99780 * 202.20594 * 11 10 9 13 13 N 1.34777 * 119.99919 * 22.20795 * 11 10 9 14 14 C 1.46497 * 119.99637 * 186.47606 * 13 11 10 15 15 H 1.09004 * 110.88692 * 31.12307 * 14 13 11 16 16 C 1.54915 * 111.00629 * 267.19587 * 14 13 11 17 17 N 1.47422 * 104.83034 * 204.92154 * 16 14 13 18 18 C 1.36942 * 125.64278 * 204.15361 * 17 16 14 19 19 H 1.07998 * 120.00291 * 359.97438 * 18 17 16 20 20 C 1.38812 * 119.99736 * 179.97438 * 18 17 16 21 21 N 1.31617 * 120.00121 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00036 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47085 * 59.99686 * 22 20 18 24 24 H 1.48498 * 109.46922 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.46718 * 299.99876 * 22 20 18 26 26 C 1.47018 * 108.70920 * 24.12774 * 17 16 14 27 27 C 1.54324 * 107.26746 * 358.94082 * 26 17 16 28 28 H 1.09002 * 110.87337 * 96.24394 * 27 26 17 29 29 O 1.42901 * 110.71845 * 219.44385 * 27 26 17 30 30 N 1.34867 * 123.91947 * 344.02045 * 7 6 5 31 31 H 1.09002 * 109.46582 * 156.10261 * 1 2 3 32 32 H 1.08999 * 109.47062 * 276.09876 * 1 2 3 33 33 H 1.08998 * 109.47013 * 36.10066 * 1 2 3 34 34 H 1.09001 * 109.30492 * 49.85391 * 4 2 1 35 35 H 1.09003 * 109.51876 * 289.91377 * 4 2 1 36 36 H 1.08999 * 109.51070 * 170.86079 * 5 4 2 37 37 H 1.09006 * 109.55586 * 50.73632 * 5 4 2 38 38 H 1.09002 * 109.70411 * 289.14601 * 6 5 4 39 39 H 1.09004 * 109.74153 * 168.54935 * 6 5 4 40 40 H 1.08003 * 126.08459 * 180.02562 * 9 8 7 41 41 H 0.96997 * 119.99951 * 6.48137 * 13 11 10 42 42 H 1.08999 * 110.36059 * 323.75823 * 16 14 13 43 43 H 1.08994 * 110.36412 * 86.07755 * 16 14 13 44 44 H 0.97001 * 120.00554 * 179.97438 * 21 20 18 45 45 H 1.09003 * 109.88604 * 239.52610 * 26 17 16 46 46 H 1.08996 * 110.01196 * 118.43238 * 26 17 16 47 47 H 0.96705 * 114.00111 * 293.51962 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8972 1.0263 0.0000 4 6 2.0448 -0.7257 1.2464 5 6 3.5550 -0.9488 1.1227 6 6 3.8243 -1.9826 0.0222 7 6 3.0361 -1.5846 -1.2041 8 7 3.2056 -2.0179 -2.4239 9 6 2.3207 -1.4349 -3.2352 10 6 1.5539 -0.5895 -2.4805 11 6 0.4545 0.2608 -2.9520 12 8 0.1220 1.2381 -2.3079 13 7 -0.1868 -0.0409 -4.0984 14 6 -1.1861 0.8815 -4.6433 15 1 -0.9394 1.9134 -4.3936 16 6 -2.6079 0.5145 -4.1498 17 7 -3.5155 1.0549 -5.1782 18 6 -4.8281 1.3940 -4.9855 19 1 -5.2803 1.2716 -4.0124 20 6 -5.5776 1.8953 -6.0410 21 7 -5.0264 2.0450 -7.2268 22 14 -7.3685 2.3572 -5.7784 23 1 -7.4598 3.4145 -4.7396 24 1 -7.9407 2.8640 -7.0515 25 1 -8.1283 1.1608 -5.3351 26 6 -2.7777 1.1701 -6.4447 27 6 -1.3323 0.7001 -6.1773 28 1 -1.2064 -0.3462 -6.4557 29 8 -0.3958 1.5234 -6.8752 30 7 2.0208 -0.6969 -1.1909 31 1 -0.3632 -0.9396 -0.4163 32 1 -0.3633 0.1092 1.0218 33 1 -0.3633 0.8303 -0.6055 34 1 1.5413 -1.6882 1.3367 35 1 1.8377 -0.1227 2.1305 36 1 3.9476 -1.3158 2.0710 37 1 4.0429 -0.0084 0.8661 38 1 3.5065 -2.9693 0.3592 39 1 4.8882 -2.0000 -0.2142 40 1 2.2261 -1.6014 -4.2981 41 1 0.0134 -0.8687 -4.5627 42 1 -2.7170 -0.5677 -4.0784 43 1 -2.8068 0.9811 -3.1851 44 1 -5.5502 2.3949 -7.9644 45 1 -2.7743 2.2077 -6.7787 46 1 -3.2387 0.5381 -7.2036 47 1 -0.4460 1.4470 -7.8380 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077032849.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:40 Heat of formation + Delta-G solvation = 5.315462 kcal Electronic energy + Delta-G solvation = -29648.392776 eV Core-core repulsion = 25639.888200 eV Total energy + Delta-G solvation = -4008.504576 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.64410 -39.51502 -37.80244 -37.34707 -35.09545 -34.24324 -33.80253 -31.82351 -30.90258 -29.77431 -28.29820 -27.41809 -26.75839 -24.55175 -23.15019 -23.13405 -22.14914 -20.65850 -20.52773 -20.09290 -19.19047 -17.93335 -17.02087 -16.85108 -16.26130 -15.76749 -15.63583 -15.21058 -14.92819 -14.90908 -14.65076 -14.28619 -14.05703 -13.99326 -13.58383 -13.30350 -13.08992 -12.71696 -12.70266 -12.43044 -12.30364 -12.09760 -11.82964 -11.57373 -11.53339 -11.50693 -11.28302 -11.00987 -10.82288 -10.80461 -10.45727 -10.19307 -9.94989 -9.86203 -9.79883 -9.77653 -9.34952 -8.88244 -8.66329 -8.49617 -6.93907 -5.78152 -3.12947 1.29664 2.32945 2.72464 3.29582 3.32385 3.38757 3.42787 3.44066 3.95465 4.15182 4.25034 4.30378 4.41977 4.59836 4.70774 4.84357 4.88612 4.95955 5.07681 5.15741 5.19677 5.28605 5.32754 5.38722 5.41528 5.49065 5.55464 5.58198 5.62202 5.65781 5.78415 5.82763 6.00368 6.06837 6.08623 6.23708 6.43121 6.52456 6.56901 6.85365 6.93231 7.30632 7.44195 7.58546 7.71284 7.82226 8.10218 8.15238 8.30461 9.12926 9.73011 10.35810 11.33502 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.020708 B = 0.002780 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.818281 B =10069.100776 C =11068.498834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.134 3.866 3 H 0.096 0.904 4 C -0.133 4.133 5 C -0.128 4.128 6 C -0.034 4.034 7 C 0.222 3.778 8 N -0.493 5.493 9 C 0.030 3.970 10 C -0.072 4.072 11 C 0.592 3.408 12 O -0.534 6.534 13 N -0.700 5.700 14 C 0.141 3.859 15 H 0.106 0.894 16 C 0.131 3.869 17 N -0.600 5.600 18 C -0.230 4.230 19 H 0.080 0.920 20 C -0.007 4.007 21 N -0.924 5.924 22 Si 0.915 3.085 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.154 3.846 27 C 0.068 3.932 28 H 0.059 0.941 29 O -0.563 6.563 30 N -0.416 5.416 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.110 0.890 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.178 0.822 41 H 0.400 0.600 42 H 0.024 0.976 43 H 0.050 0.950 44 H 0.254 0.746 45 H 0.061 0.939 46 H 0.049 0.951 47 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.347 -8.375 13.099 23.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.032 3.968 3 H 0.114 0.886 4 C -0.171 4.171 5 C -0.166 4.166 6 C -0.073 4.073 7 C -0.040 4.040 8 N -0.211 5.211 9 C -0.124 4.124 10 C -0.190 4.190 11 C 0.379 3.621 12 O -0.413 6.413 13 N -0.349 5.349 14 C 0.036 3.964 15 H 0.124 0.876 16 C 0.004 3.996 17 N -0.327 5.327 18 C -0.358 4.358 19 H 0.098 0.902 20 C -0.203 4.203 21 N -0.571 5.571 22 Si 0.745 3.255 23 H -0.210 1.210 24 H -0.215 1.215 25 H -0.211 1.211 26 C 0.028 3.972 27 C 0.008 3.992 28 H 0.077 0.923 29 O -0.368 6.368 30 N -0.097 5.097 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.128 0.872 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.110 0.890 39 H 0.116 0.884 40 H 0.196 0.804 41 H 0.235 0.765 42 H 0.042 0.958 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.079 0.921 46 H 0.067 0.933 47 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 17.595 -7.850 13.925 23.773 hybrid contribution -1.650 0.227 -0.671 1.796 sum 15.945 -7.623 13.254 22.091 Atomic orbital electron populations 1.22596 0.92083 1.05382 1.03880 1.21652 0.96797 0.96400 0.81915 0.88590 1.22043 0.96221 1.01947 0.96846 1.21722 0.95935 0.99761 0.99162 1.20265 0.99419 0.99626 0.88006 1.23415 0.91765 0.92994 0.95785 1.69911 1.25119 1.26352 0.99730 1.22680 0.94365 0.95638 0.99717 1.20674 1.04500 1.08155 0.85649 1.16704 0.80252 0.84009 0.81175 1.90668 1.66731 1.28854 1.55028 1.45603 1.40666 1.24124 1.24531 1.22311 0.87955 0.94470 0.91627 0.87587 1.21833 0.87298 0.96641 0.93850 1.44229 1.07955 1.75539 1.05018 1.19033 0.84326 1.36347 0.96102 0.90209 1.24814 0.98644 1.01172 0.95656 1.69905 1.35441 1.51107 1.00657 0.86148 0.84149 0.78330 0.76834 1.21043 1.21531 1.21099 1.21820 0.84946 1.01201 0.89214 1.23474 0.91889 0.92973 0.90856 0.92343 1.86466 1.59269 1.68178 1.22876 1.45363 1.25340 1.31916 1.07104 0.92400 0.91106 0.87177 0.90522 0.89063 0.89747 0.90987 0.89006 0.88436 0.80447 0.76545 0.95848 0.93133 0.93558 0.92060 0.93252 0.77583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.11 8.21 37.16 0.31 -1.81 16 2 C 0.13 1.40 3.26 -67.89 -0.22 1.18 16 3 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 4 C -0.13 -0.90 5.13 -26.58 -0.14 -1.04 16 5 C -0.13 -0.74 5.96 -26.46 -0.16 -0.89 16 6 C -0.03 -0.25 6.33 -27.49 -0.17 -0.43 16 7 C 0.22 2.61 7.63 -155.33 -1.19 1.42 16 8 N -0.49 -6.66 11.20 -10.36 -0.12 -6.78 16 9 C 0.03 0.39 11.40 -17.35 -0.20 0.19 16 10 C -0.07 -1.01 6.56 -82.35 -0.54 -1.55 16 11 C 0.59 9.33 7.11 -12.81 -0.09 9.24 16 12 O -0.53 -9.78 12.80 5.21 0.07 -9.71 16 13 N -0.70 -10.46 5.15 -53.00 -0.27 -10.73 16 14 C 0.14 2.61 3.10 -65.78 -0.20 2.40 16 15 H 0.11 2.24 7.64 -51.93 -0.40 1.84 16 16 C 0.13 2.75 6.93 -2.53 -0.02 2.73 16 17 N -0.60 -15.14 3.39 -170.08 -0.58 -15.72 16 18 C -0.23 -6.37 10.28 -15.06 -0.15 -6.53 16 19 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 20 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 21 N -0.92 -26.57 10.31 55.49 0.57 -26.00 16 22 Si 0.92 21.93 29.55 -169.99 -5.02 16.91 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 C 0.15 3.59 5.15 -3.07 -0.02 3.58 16 27 C 0.07 1.23 3.98 -24.90 -0.10 1.13 16 28 H 0.06 0.92 8.00 -51.93 -0.42 0.51 16 29 O -0.56 -9.56 13.39 -35.23 -0.47 -10.04 16 30 N -0.42 -5.18 2.97 -102.79 -0.31 -5.48 16 31 H 0.06 0.73 8.06 -51.93 -0.42 0.31 16 32 H 0.07 0.65 7.94 -51.93 -0.41 0.24 16 33 H 0.11 1.63 4.90 -51.93 -0.25 1.37 16 34 H 0.08 0.53 8.09 -51.93 -0.42 0.11 16 35 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 0.45 8.13 -51.93 -0.42 0.03 16 38 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.18 1.84 7.93 -52.48 -0.42 1.43 16 41 H 0.40 4.89 8.05 -40.82 -0.33 4.56 16 42 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 44 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 45 H 0.06 1.62 7.29 -51.93 -0.38 1.24 16 46 H 0.05 1.24 7.51 -51.93 -0.39 0.85 16 47 H 0.38 4.84 9.12 45.56 0.42 5.26 16 LS Contribution 372.38 15.07 5.61 5.61 Total: -1.00 -34.08 372.38 -9.84 -43.92 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -6.34 Total: 8.66 kcal Atomic # 6 Polarization: 12.34 SS G_CDS: -2.99 Total: 9.35 kcal Atomic # 7 Polarization: -64.01 SS G_CDS: -0.70 Total: -64.71 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.41 Total: -19.75 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.08 -9.84 -43.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077032849.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.235 kcal (2) G-P(sol) polarization free energy of solvation -34.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds