Wall clock time and date at job start Tue Mar 31 2020 19:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.68587 * 2 1 4 4 C 1.53135 * 109.64370 * 120.20906 * 2 1 3 5 5 C 1.53154 * 109.55870 * 169.82013 * 4 2 1 6 6 C 1.53375 * 109.22594 * 290.78816 * 5 4 2 7 7 C 1.51113 * 108.24887 * 48.83706 * 6 5 4 8 8 N 1.30549 * 127.08913 * 163.96338 * 7 6 5 9 9 C 1.33458 * 109.68508 * 180.12050 * 8 7 6 10 10 C 1.36829 * 107.83149 * 359.97438 * 9 8 7 11 11 C 1.46771 * 126.91009 * 179.97438 * 10 9 8 12 12 O 1.21679 * 119.99780 * 202.20594 * 11 10 9 13 13 N 1.34777 * 119.99919 * 22.20795 * 11 10 9 14 14 C 1.46497 * 119.99637 * 186.47606 * 13 11 10 15 15 H 1.09004 * 110.88692 * 31.12307 * 14 13 11 16 16 C 1.54915 * 111.00629 * 267.19587 * 14 13 11 17 17 N 1.47422 * 104.83034 * 204.92154 * 16 14 13 18 18 C 1.36942 * 125.64278 * 204.15361 * 17 16 14 19 19 H 1.07998 * 120.00291 * 359.97438 * 18 17 16 20 20 C 1.38812 * 119.99736 * 179.97438 * 18 17 16 21 21 N 1.31617 * 120.00121 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00036 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47085 * 59.99686 * 22 20 18 24 24 H 1.48498 * 109.46922 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.46718 * 299.99876 * 22 20 18 26 26 C 1.47018 * 108.70920 * 24.12774 * 17 16 14 27 27 C 1.54324 * 107.26746 * 358.94082 * 26 17 16 28 28 H 1.09002 * 110.87337 * 96.24394 * 27 26 17 29 29 O 1.42901 * 110.71845 * 219.44385 * 27 26 17 30 30 N 1.34867 * 123.91947 * 344.02045 * 7 6 5 31 31 H 1.09002 * 109.46582 * 156.10261 * 1 2 3 32 32 H 1.08999 * 109.47062 * 276.09876 * 1 2 3 33 33 H 1.08998 * 109.47013 * 36.10066 * 1 2 3 34 34 H 1.09001 * 109.30492 * 49.85391 * 4 2 1 35 35 H 1.09003 * 109.51876 * 289.91377 * 4 2 1 36 36 H 1.08999 * 109.51070 * 170.86079 * 5 4 2 37 37 H 1.09006 * 109.55586 * 50.73632 * 5 4 2 38 38 H 1.09002 * 109.70411 * 289.14601 * 6 5 4 39 39 H 1.09004 * 109.74153 * 168.54935 * 6 5 4 40 40 H 1.08003 * 126.08459 * 180.02562 * 9 8 7 41 41 H 0.96997 * 119.99951 * 6.48137 * 13 11 10 42 42 H 1.08999 * 110.36059 * 323.75823 * 16 14 13 43 43 H 1.08994 * 110.36412 * 86.07755 * 16 14 13 44 44 H 0.97001 * 120.00554 * 179.97438 * 21 20 18 45 45 H 1.09003 * 109.88604 * 239.52610 * 26 17 16 46 46 H 1.08996 * 110.01196 * 118.43238 * 26 17 16 47 47 H 0.96705 * 114.00111 * 293.51962 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8972 1.0263 0.0000 4 6 2.0448 -0.7257 1.2464 5 6 3.5550 -0.9488 1.1227 6 6 3.8243 -1.9826 0.0222 7 6 3.0361 -1.5846 -1.2041 8 7 3.2056 -2.0179 -2.4239 9 6 2.3207 -1.4349 -3.2352 10 6 1.5539 -0.5895 -2.4805 11 6 0.4545 0.2608 -2.9520 12 8 0.1220 1.2381 -2.3079 13 7 -0.1868 -0.0409 -4.0984 14 6 -1.1861 0.8815 -4.6433 15 1 -0.9394 1.9134 -4.3936 16 6 -2.6079 0.5145 -4.1498 17 7 -3.5155 1.0549 -5.1782 18 6 -4.8281 1.3940 -4.9855 19 1 -5.2803 1.2716 -4.0124 20 6 -5.5776 1.8953 -6.0410 21 7 -5.0264 2.0450 -7.2268 22 14 -7.3685 2.3572 -5.7784 23 1 -7.4598 3.4145 -4.7396 24 1 -7.9407 2.8640 -7.0515 25 1 -8.1283 1.1608 -5.3351 26 6 -2.7777 1.1701 -6.4447 27 6 -1.3323 0.7001 -6.1773 28 1 -1.2064 -0.3462 -6.4557 29 8 -0.3958 1.5234 -6.8752 30 7 2.0208 -0.6969 -1.1909 31 1 -0.3632 -0.9396 -0.4163 32 1 -0.3633 0.1092 1.0218 33 1 -0.3633 0.8303 -0.6055 34 1 1.5413 -1.6882 1.3367 35 1 1.8377 -0.1227 2.1305 36 1 3.9476 -1.3158 2.0710 37 1 4.0429 -0.0084 0.8661 38 1 3.5065 -2.9693 0.3592 39 1 4.8882 -2.0000 -0.2142 40 1 2.2261 -1.6014 -4.2981 41 1 0.0134 -0.8687 -4.5627 42 1 -2.7170 -0.5677 -4.0784 43 1 -2.8068 0.9811 -3.1851 44 1 -5.5502 2.3949 -7.9644 45 1 -2.7743 2.2077 -6.7787 46 1 -3.2387 0.5381 -7.2036 47 1 -0.4460 1.4470 -7.8380 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077032849.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:39 Heat of formation + Delta-G solvation = -20.192557 kcal Electronic energy + Delta-G solvation = -29649.498887 eV Core-core repulsion = 25639.888200 eV Total energy + Delta-G solvation = -4009.610687 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.56957 -40.89191 -39.33034 -38.08217 -36.68626 -35.67501 -34.62779 -33.70260 -31.77999 -31.00931 -29.86396 -28.74671 -27.90283 -26.36489 -24.24806 -23.93941 -22.97941 -22.36852 -22.01014 -21.32776 -20.02313 -19.23073 -18.71803 -18.29860 -17.45679 -17.13976 -16.69229 -16.49835 -16.27738 -15.84536 -15.77072 -15.54181 -15.23801 -15.15518 -14.70580 -14.48437 -14.34567 -14.26729 -13.94892 -13.77850 -13.44145 -13.28446 -13.17019 -13.06871 -12.76991 -12.70776 -12.60678 -12.14532 -12.07002 -12.01758 -11.89827 -11.66545 -11.58526 -11.50805 -11.03520 -10.81464 -10.77462 -10.73083 -10.20883 -9.48278 -8.98435 -7.89656 -5.27134 0.26280 1.36132 1.45258 1.48482 1.54652 1.73663 2.13992 2.18278 2.47204 3.10662 3.24173 3.31051 3.48169 3.52090 3.53442 3.64118 3.76959 3.86696 4.03232 4.04161 4.15657 4.17170 4.28787 4.33854 4.41995 4.44018 4.52176 4.58148 4.70764 4.79685 4.85283 4.88917 4.92760 4.95044 5.05580 5.17388 5.21571 5.27718 5.36120 5.43004 5.48101 5.49087 5.65535 6.07418 6.12285 6.39415 6.86258 6.86501 7.03345 7.10299 7.67907 8.30199 9.19832 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.020708 B = 0.002780 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.818281 B =10069.100776 C =11068.498834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.129 3.871 3 H 0.086 0.914 4 C -0.126 4.126 5 C -0.121 4.121 6 C -0.036 4.036 7 C 0.229 3.771 8 N -0.519 5.519 9 C 0.037 3.963 10 C -0.101 4.101 11 C 0.593 3.407 12 O -0.565 6.565 13 N -0.687 5.687 14 C 0.159 3.841 15 H 0.076 0.924 16 C 0.133 3.867 17 N -0.621 5.621 18 C -0.250 4.250 19 H 0.081 0.919 20 C -0.060 4.060 21 N -0.948 5.948 22 Si 0.980 3.020 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.274 1.274 26 C 0.162 3.838 27 C 0.091 3.909 28 H 0.096 0.904 29 O -0.568 6.568 30 N -0.422 5.422 31 H 0.043 0.957 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.066 0.934 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.199 0.801 41 H 0.416 0.584 42 H 0.040 0.960 43 H 0.036 0.964 44 H 0.250 0.750 45 H 0.022 0.978 46 H 0.027 0.973 47 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.934 -10.093 14.815 26.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.027 3.973 3 H 0.104 0.896 4 C -0.163 4.163 5 C -0.159 4.159 6 C -0.075 4.075 7 C -0.033 4.033 8 N -0.238 5.238 9 C -0.117 4.117 10 C -0.218 4.218 11 C 0.381 3.619 12 O -0.446 6.446 13 N -0.338 5.338 14 C 0.053 3.947 15 H 0.094 0.906 16 C 0.007 3.993 17 N -0.349 5.349 18 C -0.378 4.378 19 H 0.099 0.901 20 C -0.254 4.254 21 N -0.596 5.596 22 Si 0.808 3.192 23 H -0.206 1.206 24 H -0.217 1.217 25 H -0.200 1.200 26 C 0.036 3.964 27 C 0.030 3.970 28 H 0.113 0.887 29 O -0.376 6.376 30 N -0.103 5.103 31 H 0.062 0.938 32 H 0.113 0.887 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.132 0.868 36 H 0.135 0.865 37 H 0.085 0.915 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.216 0.784 41 H 0.254 0.746 42 H 0.058 0.942 43 H 0.054 0.946 44 H 0.059 0.941 45 H 0.040 0.960 46 H 0.045 0.955 47 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 19.214 -9.599 15.645 26.572 hybrid contribution -2.084 0.759 -1.162 2.504 sum 17.130 -8.840 14.483 24.111 Atomic orbital electron populations 1.22461 0.93313 1.02980 1.04455 1.21827 0.95856 0.96607 0.83014 0.89555 1.22068 0.96966 1.01935 0.95372 1.21735 0.94975 0.99192 1.00004 1.20563 0.99455 1.00885 0.86593 1.24349 0.90920 0.91417 0.96654 1.69972 1.25815 1.27370 1.00662 1.23089 0.93444 0.94482 1.00688 1.20458 1.04979 1.09352 0.86988 1.16967 0.80381 0.83797 0.80754 1.90679 1.67718 1.30281 1.55877 1.45310 1.39782 1.24180 1.24549 1.21766 0.87298 0.93649 0.92029 0.90574 1.21899 0.88128 0.96978 0.92333 1.44498 1.08032 1.75679 1.06706 1.19400 0.85797 1.36310 0.96307 0.90087 1.25651 1.02713 1.01501 0.95516 1.70113 1.36581 1.51763 1.01150 0.85132 0.79337 0.78195 0.76529 1.20597 1.21697 1.20022 1.21621 0.88073 0.98567 0.88150 1.23167 0.88616 0.94641 0.90531 0.88677 1.86434 1.58211 1.68242 1.24734 1.45570 1.25524 1.32147 1.07037 0.93772 0.88740 0.90646 0.90183 0.86850 0.86539 0.91486 0.87269 0.87201 0.78392 0.74599 0.94222 0.94584 0.94093 0.96022 0.95482 0.75285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.06 8.21 71.98 0.59 -3.47 16 2 C 0.13 2.56 3.26 45.05 0.15 2.71 16 3 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 4 C -0.13 -1.35 5.13 30.69 0.16 -1.19 16 5 C -0.12 -0.96 5.96 30.77 0.18 -0.78 16 6 C -0.04 -0.42 6.33 30.10 0.19 -0.23 16 7 C 0.23 4.93 7.63 138.30 1.06 5.99 16 8 N -0.52 -13.16 11.20 -186.68 -2.09 -15.25 16 9 C 0.04 0.92 11.40 84.12 0.96 1.88 16 10 C -0.10 -2.78 6.56 40.14 0.26 -2.51 16 11 C 0.59 18.88 7.11 86.47 0.62 19.49 16 12 O -0.57 -21.53 12.80 -4.28 -0.05 -21.58 16 13 N -0.69 -20.20 5.15 -439.82 -2.27 -22.46 16 14 C 0.16 5.91 3.10 46.39 0.14 6.06 16 15 H 0.08 3.34 7.64 -2.39 -0.02 3.32 16 16 C 0.13 5.69 6.93 86.86 0.60 6.29 16 17 N -0.62 -32.26 3.39 -692.00 -2.35 -34.61 16 18 C -0.25 -14.16 10.28 84.03 0.86 -13.29 16 19 H 0.08 4.43 7.83 -2.91 -0.02 4.40 16 20 C -0.06 -3.43 5.49 84.86 0.47 -2.97 16 21 N -0.95 -56.12 10.31 21.65 0.22 -55.89 16 22 Si 0.98 45.74 29.55 68.60 2.03 47.77 16 23 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 24 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 25 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 26 C 0.16 7.77 5.15 86.73 0.45 8.22 16 27 C 0.09 3.23 3.98 31.78 0.13 3.35 16 28 H 0.10 2.75 8.00 -2.39 -0.02 2.74 16 29 O -0.57 -18.79 13.39 -148.98 -1.99 -20.79 16 30 N -0.42 -10.10 2.97 -479.13 -1.42 -11.53 16 31 H 0.04 1.12 8.06 -2.39 -0.02 1.10 16 32 H 0.09 1.65 7.94 -2.39 -0.02 1.63 16 33 H 0.08 2.34 4.90 -2.42 -0.01 2.33 16 34 H 0.08 0.85 8.09 -2.39 -0.02 0.83 16 35 H 0.11 0.74 8.14 -2.39 -0.02 0.73 16 36 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 37 H 0.07 0.64 8.13 -2.38 -0.02 0.62 16 38 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.20 3.72 7.93 -2.91 -0.02 3.70 16 41 H 0.42 9.47 8.05 -92.71 -0.75 8.72 16 42 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.25 14.38 8.31 -92.71 -0.77 13.60 16 45 H 0.02 1.20 7.29 -2.39 -0.02 1.18 16 46 H 0.03 1.40 7.51 -2.39 -0.02 1.38 16 47 H 0.40 9.66 9.12 -74.05 -0.68 8.99 16 Total: -1.00 -77.25 372.38 -1.53 -78.79 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: -0.41 Total: 26.02 kcal Atomic # 6 Polarization: 22.73 SS G_CDS: 6.81 Total: 29.54 kcal Atomic # 7 Polarization: -131.84 SS G_CDS: -7.91 Total: -139.74 kcal Atomic # 8 Polarization: -40.32 SS G_CDS: -2.05 Total: -42.37 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -77.25 -1.53 -78.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077032849.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.594 kcal (2) G-P(sol) polarization free energy of solvation -77.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds