Wall clock time and date at job start Tue Mar 31 2020 19:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.45406 * 2 1 4 4 C 1.53135 * 109.46167 * 240.02582 * 2 1 3 5 5 C 1.53391 * 109.24961 * 170.17385 * 4 2 1 6 6 C 1.51107 * 108.19232 * 48.94939 * 5 4 2 7 7 N 1.29792 * 127.17638 * 164.30774 * 6 5 4 8 8 C 1.35893 * 108.85321 * 180.24984 * 7 6 5 9 9 C 1.47321 * 126.21371 * 179.85828 * 8 7 6 10 10 O 1.21624 * 119.99998 * 179.68825 * 9 8 7 11 11 N 1.34777 * 119.99958 * 359.68820 * 9 8 7 12 12 C 1.46495 * 120.00234 * 179.97438 * 11 9 8 13 13 H 1.09000 * 110.91616 * 31.09979 * 12 11 9 14 14 C 1.54918 * 111.00632 * 267.20315 * 12 11 9 15 15 N 1.47425 * 104.82827 * 204.91527 * 14 12 11 16 16 C 1.36938 * 125.64463 * 204.10316 * 15 14 12 17 17 H 1.08003 * 119.99775 * 359.97438 * 16 15 14 18 18 C 1.38807 * 120.00396 * 179.97438 * 16 15 14 19 19 N 1.31622 * 119.99373 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00409 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47353 * 89.99888 * 20 18 16 22 22 H 1.48502 * 109.47169 * 209.99909 * 20 18 16 23 23 H 1.48498 * 109.46810 * 329.99915 * 20 18 16 24 24 C 1.47015 * 108.70882 * 24.12597 * 15 14 12 25 25 C 1.54325 * 107.27065 * 358.94051 * 24 15 14 26 26 H 1.08999 * 110.87305 * 96.24314 * 25 24 15 27 27 O 1.42901 * 110.72114 * 219.44659 * 25 24 15 28 28 C 1.36575 * 107.57526 * 359.59472 * 8 7 6 29 29 N 1.34870 * 106.78649 * 0.19149 * 28 8 7 30 30 C 1.46576 * 127.50143 * 180.13259 * 29 28 8 31 31 H 1.09005 * 109.47003 * 300.02494 * 1 2 3 32 32 H 1.08994 * 109.46918 * 60.02847 * 1 2 3 33 33 H 1.08999 * 109.46912 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.51287 * 290.10809 * 4 2 1 35 35 H 1.09000 * 109.50682 * 50.24465 * 4 2 1 36 36 H 1.09001 * 109.71951 * 168.61751 * 5 4 2 37 37 H 1.08993 * 109.72363 * 289.27488 * 5 4 2 38 38 H 0.97000 * 120.00256 * 0.02562 * 11 9 8 39 39 H 1.08999 * 110.35942 * 323.74720 * 14 12 11 40 40 H 1.08996 * 110.36556 * 86.07552 * 14 12 11 41 41 H 0.97006 * 119.99857 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.88350 * 239.52260 * 24 15 14 43 43 H 1.08998 * 109.88602 * 118.35926 * 24 15 14 44 44 H 0.96698 * 113.99595 * 293.52017 * 27 25 24 45 45 H 1.08001 * 126.60867 * 180.14918 * 28 8 7 46 46 H 1.09001 * 109.58618 * 282.58090 * 30 29 28 47 47 H 1.09001 * 109.58726 * 43.00284 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0402 -0.7214 -1.2507 5 6 3.5540 -0.5080 -1.3754 6 6 4.1861 -0.8194 -0.0387 7 7 5.4428 -1.0349 0.2035 8 6 5.5980 -1.2841 1.5303 9 6 6.8668 -1.5806 2.2177 10 8 6.8761 -1.7815 3.4172 11 7 8.0173 -1.6293 1.5174 12 6 9.2791 -1.9236 2.2009 13 1 9.1149 -2.5803 3.0553 14 6 9.9942 -0.6190 2.6329 15 7 11.4205 -0.9815 2.7196 16 6 12.3619 -0.3407 3.4800 17 1 12.0808 0.5091 4.0844 18 6 13.6775 -0.7833 3.4742 19 7 14.0202 -1.8186 2.7372 20 14 14.9616 0.0904 4.5122 21 1 15.0186 -0.5342 5.8582 22 1 16.2893 -0.0240 3.8568 23 1 14.5977 1.5238 4.6466 24 6 11.6650 -2.1444 1.8540 25 6 10.3136 -2.5357 1.2198 26 1 10.2093 -2.0981 0.2270 27 8 10.1753 -3.9568 1.1611 28 6 4.3649 -1.2037 2.1119 29 7 3.4887 -0.9127 1.1288 30 6 2.0406 -0.7218 1.2517 31 1 -0.3633 0.5142 0.8898 32 1 -0.3633 0.5134 -0.8902 33 1 -0.3633 -1.0277 0.0005 34 1 1.8285 -1.7874 -1.1680 35 1 1.5419 -0.3180 -2.1323 36 1 3.9579 -1.1747 -2.1373 37 1 3.7584 0.5278 -1.6464 38 1 8.0099 -1.4687 0.5608 39 1 9.8455 0.1602 1.8853 40 1 9.6268 -0.2890 3.6045 41 1 14.9397 -2.1277 2.7328 42 1 12.0500 -2.9737 2.4473 43 1 12.3787 -1.8819 1.0731 44 1 10.7992 -4.3882 0.5614 45 1 4.1354 -1.3465 3.1576 46 1 1.5504 -1.6914 1.3398 47 1 1.8251 -0.1195 2.1343 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077224770.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:55 Heat of formation + Delta-G solvation = -4.715920 kcal Electronic energy + Delta-G solvation = -28622.850993 eV Core-core repulsion = 24613.911423 eV Total energy + Delta-G solvation = -4008.939570 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.59985 -39.32563 -37.87190 -37.33695 -34.95179 -33.98973 -33.59759 -32.05557 -31.47178 -29.07696 -28.33157 -27.28692 -26.57949 -24.60015 -24.20457 -22.83411 -21.86348 -20.45043 -20.18184 -19.77477 -19.43090 -17.81619 -16.96393 -16.70509 -16.36683 -16.08170 -15.57353 -15.25061 -15.00244 -14.63991 -14.27816 -14.25420 -14.12329 -13.86325 -13.84833 -13.51892 -13.06151 -12.95158 -12.72852 -12.57768 -12.34279 -12.02437 -11.93011 -11.67515 -11.44821 -11.38675 -11.34395 -11.15605 -10.81259 -10.76250 -10.37496 -10.10899 -9.90205 -9.81022 -9.78388 -9.74772 -9.21447 -8.72647 -8.59483 -8.42103 -6.82811 -5.68855 -3.02959 1.57030 2.32710 2.34938 3.44139 3.48436 3.50290 3.55193 3.74546 3.77524 3.94709 4.03672 4.10879 4.51626 4.56552 4.65088 4.75267 4.76353 4.83063 4.84969 4.93933 5.04412 5.15190 5.28991 5.31922 5.34126 5.36811 5.48340 5.52048 5.55436 5.64960 5.72500 5.78575 5.91261 5.94840 6.20501 6.27567 6.36959 6.67899 6.73117 6.81085 7.05983 7.42707 7.55371 7.64871 7.80380 8.01599 8.23863 8.25591 8.61654 9.22741 9.82813 10.46857 11.42928 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.026343 B = 0.002187 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.665661 B =12799.288767 C =13152.088552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 H 0.085 0.915 4 C -0.121 4.121 5 C -0.033 4.033 6 C 0.207 3.793 7 N -0.456 5.456 8 C -0.055 4.055 9 C 0.603 3.397 10 O -0.546 6.546 11 N -0.699 5.699 12 C 0.138 3.862 13 H 0.105 0.895 14 C 0.130 3.870 15 N -0.600 5.600 16 C -0.225 4.225 17 H 0.080 0.920 18 C -0.010 4.010 19 N -0.924 5.924 20 Si 0.915 3.085 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.155 3.845 25 C 0.068 3.932 26 H 0.058 0.942 27 O -0.563 6.563 28 C 0.033 3.967 29 N -0.456 5.456 30 C 0.106 3.894 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.405 0.595 39 H 0.025 0.975 40 H 0.050 0.950 41 H 0.252 0.748 42 H 0.061 0.939 43 H 0.048 0.952 44 H 0.375 0.625 45 H 0.188 0.812 46 H 0.088 0.912 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.134 1.834 -10.799 31.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.126 4.126 3 H 0.103 0.897 4 C -0.159 4.159 5 C -0.072 4.072 6 C -0.057 4.057 7 N -0.175 5.175 8 C -0.184 4.184 9 C 0.388 3.612 10 O -0.423 6.423 11 N -0.348 5.348 12 C 0.033 3.967 13 H 0.123 0.877 14 C 0.003 3.997 15 N -0.328 5.328 16 C -0.353 4.353 17 H 0.098 0.902 18 C -0.206 4.206 19 N -0.572 5.572 20 Si 0.746 3.254 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.029 3.971 25 C 0.008 3.992 26 H 0.076 0.924 27 O -0.367 6.367 28 C -0.105 4.105 29 N -0.138 5.138 30 C -0.016 4.016 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.116 0.884 37 H 0.109 0.891 38 H 0.240 0.760 39 H 0.042 0.958 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.222 0.778 45 H 0.205 0.795 46 H 0.106 0.894 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -28.827 1.810 -10.002 30.567 hybrid contribution 0.585 0.378 0.340 0.775 sum -28.242 2.188 -9.663 29.930 Atomic orbital electron populations 1.21768 0.93070 1.02623 1.02796 1.21488 0.97058 1.00447 0.93605 0.89692 1.21777 0.94711 1.01427 0.98008 1.20231 0.93658 1.03562 0.89730 1.23487 0.87107 1.05606 0.89508 1.70379 1.15539 1.17109 1.14507 1.20688 0.93965 1.13378 0.90407 1.16848 0.81974 0.76503 0.85839 1.90799 1.86608 1.51013 1.13920 1.45680 1.06371 1.70698 1.12095 1.22261 0.81118 0.97671 0.95662 0.87673 1.21860 0.85588 0.93344 0.98954 1.44252 1.02707 1.33843 1.52018 1.19094 0.87731 1.09498 1.19023 0.90168 1.24819 0.97248 0.98344 1.00160 1.69936 1.17417 1.26757 1.43101 0.86061 0.80917 0.78835 0.79613 1.21542 1.21701 1.20669 1.21811 0.90023 0.91288 0.93980 1.23470 0.97634 0.80780 0.97296 0.92429 1.86472 1.61384 1.19471 1.69408 1.22430 0.88914 1.03951 0.95223 1.45284 1.08471 1.52040 1.07984 1.22163 0.76855 1.02252 1.00336 0.92026 0.91476 0.92055 0.90992 0.89734 0.88379 0.89054 0.76038 0.95763 0.93168 0.93722 0.92116 0.93357 0.77812 0.79466 0.89383 0.88847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.31 9.17 37.16 0.34 0.03 16 2 C -0.11 -0.41 2.73 -90.42 -0.25 -0.65 16 3 H 0.08 0.37 8.11 -51.93 -0.42 -0.05 16 4 C -0.12 -0.49 5.25 -26.46 -0.14 -0.63 16 5 C -0.03 -0.22 6.33 -27.48 -0.17 -0.39 16 6 C 0.21 2.24 7.64 -154.63 -1.18 1.06 16 7 N -0.46 -6.52 11.00 -7.00 -0.08 -6.60 16 8 C -0.06 -0.86 6.98 -82.97 -0.58 -1.44 16 9 C 0.60 11.19 7.81 -12.57 -0.10 11.10 16 10 O -0.55 -11.67 16.52 5.26 0.09 -11.59 16 11 N -0.70 -12.71 5.19 -52.83 -0.27 -12.99 16 12 C 0.14 2.89 3.15 -65.78 -0.21 2.68 16 13 H 0.11 2.47 7.54 -51.93 -0.39 2.08 16 14 C 0.13 2.99 6.93 -2.52 -0.02 2.97 16 15 N -0.60 -16.11 3.39 -170.07 -0.58 -16.68 16 16 C -0.23 -6.51 10.28 -15.06 -0.15 -6.67 16 17 H 0.08 2.24 7.83 -52.48 -0.41 1.83 16 18 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 19 N -0.92 -27.53 10.31 55.49 0.57 -26.95 16 20 Si 0.92 22.67 29.55 -169.99 -5.02 17.64 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 C 0.15 3.85 5.15 -3.07 -0.02 3.84 16 25 C 0.07 1.38 3.98 -24.90 -0.10 1.28 16 26 H 0.06 1.05 8.00 -51.93 -0.42 0.63 16 27 O -0.56 -10.63 13.39 -35.23 -0.47 -11.10 16 28 C 0.03 0.41 11.32 -16.82 -0.19 0.22 16 29 N -0.46 -4.37 3.11 -113.41 -0.35 -4.72 16 30 C 0.11 0.55 6.25 -3.87 -0.02 0.53 16 31 H 0.06 0.12 8.14 -51.93 -0.42 -0.30 16 32 H 0.07 0.12 8.14 -51.93 -0.42 -0.30 16 33 H 0.06 0.12 8.14 -51.93 -0.42 -0.30 16 34 H 0.07 0.31 8.12 -51.93 -0.42 -0.11 16 35 H 0.08 0.20 8.12 -51.93 -0.42 -0.22 16 36 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.40 6.67 8.28 -40.82 -0.34 6.33 16 39 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.06 1.69 7.29 -51.93 -0.38 1.31 16 43 H 0.05 1.28 7.51 -51.93 -0.39 0.89 16 44 H 0.38 5.42 9.12 45.56 0.42 5.84 16 45 H 0.19 1.96 8.06 -52.49 -0.42 1.54 16 46 H 0.09 0.37 8.12 -51.93 -0.42 -0.05 16 47 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 381.79 15.07 5.75 5.75 Total: -1.00 -36.64 381.79 -9.78 -46.42 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -6.54 Total: 7.27 kcal Atomic # 6 Polarization: 16.43 SS G_CDS: -2.88 Total: 13.55 kcal Atomic # 7 Polarization: -67.24 SS G_CDS: -0.71 Total: -67.95 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.38 Total: -22.69 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.64 -9.78 -46.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077224770.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.703 kcal (2) G-P(sol) polarization free energy of solvation -36.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds