Wall clock time and date at job start Tue Mar 31 2020 19:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.45406 * 2 1 4 4 C 1.53135 * 109.46167 * 240.02582 * 2 1 3 5 5 C 1.53391 * 109.24961 * 170.17385 * 4 2 1 6 6 C 1.51107 * 108.19232 * 48.94939 * 5 4 2 7 7 N 1.29792 * 127.17638 * 164.30774 * 6 5 4 8 8 C 1.35893 * 108.85321 * 180.24984 * 7 6 5 9 9 C 1.47321 * 126.21371 * 179.85828 * 8 7 6 10 10 O 1.21624 * 119.99998 * 179.68825 * 9 8 7 11 11 N 1.34777 * 119.99958 * 359.68820 * 9 8 7 12 12 C 1.46495 * 120.00234 * 179.97438 * 11 9 8 13 13 H 1.09000 * 110.91616 * 31.09979 * 12 11 9 14 14 C 1.54918 * 111.00632 * 267.20315 * 12 11 9 15 15 N 1.47425 * 104.82827 * 204.91527 * 14 12 11 16 16 C 1.36938 * 125.64463 * 204.10316 * 15 14 12 17 17 H 1.08003 * 119.99775 * 359.97438 * 16 15 14 18 18 C 1.38807 * 120.00396 * 179.97438 * 16 15 14 19 19 N 1.31622 * 119.99373 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00409 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47353 * 89.99888 * 20 18 16 22 22 H 1.48502 * 109.47169 * 209.99909 * 20 18 16 23 23 H 1.48498 * 109.46810 * 329.99915 * 20 18 16 24 24 C 1.47015 * 108.70882 * 24.12597 * 15 14 12 25 25 C 1.54325 * 107.27065 * 358.94051 * 24 15 14 26 26 H 1.08999 * 110.87305 * 96.24314 * 25 24 15 27 27 O 1.42901 * 110.72114 * 219.44659 * 25 24 15 28 28 C 1.36575 * 107.57526 * 359.59472 * 8 7 6 29 29 N 1.34870 * 106.78649 * 0.19149 * 28 8 7 30 30 C 1.46576 * 127.50143 * 180.13259 * 29 28 8 31 31 H 1.09005 * 109.47003 * 300.02494 * 1 2 3 32 32 H 1.08994 * 109.46918 * 60.02847 * 1 2 3 33 33 H 1.08999 * 109.46912 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.51287 * 290.10809 * 4 2 1 35 35 H 1.09000 * 109.50682 * 50.24465 * 4 2 1 36 36 H 1.09001 * 109.71951 * 168.61751 * 5 4 2 37 37 H 1.08993 * 109.72363 * 289.27488 * 5 4 2 38 38 H 0.97000 * 120.00256 * 0.02562 * 11 9 8 39 39 H 1.08999 * 110.35942 * 323.74720 * 14 12 11 40 40 H 1.08996 * 110.36556 * 86.07552 * 14 12 11 41 41 H 0.97006 * 119.99857 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.88350 * 239.52260 * 24 15 14 43 43 H 1.08998 * 109.88602 * 118.35926 * 24 15 14 44 44 H 0.96698 * 113.99595 * 293.52017 * 27 25 24 45 45 H 1.08001 * 126.60867 * 180.14918 * 28 8 7 46 46 H 1.09001 * 109.58618 * 282.58090 * 30 29 28 47 47 H 1.09001 * 109.58726 * 43.00284 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0402 -0.7214 -1.2507 5 6 3.5540 -0.5080 -1.3754 6 6 4.1861 -0.8194 -0.0387 7 7 5.4428 -1.0349 0.2035 8 6 5.5980 -1.2841 1.5303 9 6 6.8668 -1.5806 2.2177 10 8 6.8761 -1.7815 3.4172 11 7 8.0173 -1.6293 1.5174 12 6 9.2791 -1.9236 2.2009 13 1 9.1149 -2.5803 3.0553 14 6 9.9942 -0.6190 2.6329 15 7 11.4205 -0.9815 2.7196 16 6 12.3619 -0.3407 3.4800 17 1 12.0808 0.5091 4.0844 18 6 13.6775 -0.7833 3.4742 19 7 14.0202 -1.8186 2.7372 20 14 14.9616 0.0904 4.5122 21 1 15.0186 -0.5342 5.8582 22 1 16.2893 -0.0240 3.8568 23 1 14.5977 1.5238 4.6466 24 6 11.6650 -2.1444 1.8540 25 6 10.3136 -2.5357 1.2198 26 1 10.2093 -2.0981 0.2270 27 8 10.1753 -3.9568 1.1611 28 6 4.3649 -1.2037 2.1119 29 7 3.4887 -0.9127 1.1288 30 6 2.0406 -0.7218 1.2517 31 1 -0.3633 0.5142 0.8898 32 1 -0.3633 0.5134 -0.8902 33 1 -0.3633 -1.0277 0.0005 34 1 1.8285 -1.7874 -1.1680 35 1 1.5419 -0.3180 -2.1323 36 1 3.9579 -1.1747 -2.1373 37 1 3.7584 0.5278 -1.6464 38 1 8.0099 -1.4687 0.5608 39 1 9.8455 0.1602 1.8853 40 1 9.6268 -0.2890 3.6045 41 1 14.9397 -2.1277 2.7328 42 1 12.0500 -2.9737 2.4473 43 1 12.3787 -1.8819 1.0731 44 1 10.7992 -4.3882 0.5614 45 1 4.1354 -1.3465 3.1576 46 1 1.5504 -1.6914 1.3398 47 1 1.8251 -0.1195 2.1343 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077224770.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:54 Heat of formation + Delta-G solvation = -32.469915 kcal Electronic energy + Delta-G solvation = -28624.054497 eV Core-core repulsion = 24613.911423 eV Total energy + Delta-G solvation = -4010.143073 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.45660 -40.86211 -39.34468 -38.05898 -36.70234 -35.58281 -34.44130 -33.61532 -32.49826 -30.35823 -29.75375 -28.84995 -27.47570 -26.34776 -24.88504 -24.00610 -22.48557 -22.31770 -21.82329 -21.11759 -20.01931 -19.17244 -18.69543 -18.23298 -17.38834 -17.18421 -16.99925 -16.53826 -16.06615 -15.75395 -15.54011 -15.44004 -15.37008 -14.95871 -14.67254 -14.58124 -14.47903 -14.23599 -14.07679 -13.77313 -13.37665 -13.19065 -13.16948 -13.09225 -12.76918 -12.73566 -12.41843 -12.09332 -12.00304 -11.89403 -11.81173 -11.67939 -11.57218 -11.41546 -11.17611 -10.90438 -10.77846 -10.71465 -10.20543 -9.49312 -8.98425 -7.88827 -5.26760 0.51667 1.34569 1.45299 1.48367 1.56644 1.59922 2.14501 2.45432 2.49445 3.10088 3.12936 3.31580 3.44316 3.53230 3.58825 3.71452 3.83246 3.95254 4.03754 4.05607 4.16600 4.27038 4.37907 4.39894 4.43451 4.47397 4.53522 4.58231 4.71999 4.79152 4.90078 4.94909 4.97920 5.01718 5.11699 5.16766 5.31771 5.35187 5.41180 5.42267 5.43295 5.44774 5.64350 6.04381 6.12139 6.46049 6.84852 6.85385 7.03556 7.19854 7.67469 8.31069 9.21158 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.026343 B = 0.002187 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.665661 B =12799.288767 C =13152.088552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 H 0.081 0.919 4 C -0.116 4.116 5 C -0.034 4.034 6 C 0.211 3.789 7 N -0.488 5.488 8 C -0.095 4.095 9 C 0.600 3.400 10 O -0.584 6.584 11 N -0.691 5.691 12 C 0.152 3.848 13 H 0.076 0.924 14 C 0.133 3.867 15 N -0.621 5.621 16 C -0.248 4.248 17 H 0.082 0.918 18 C -0.064 4.064 19 N -0.949 5.949 20 Si 0.985 3.015 21 H -0.287 1.287 22 H -0.289 1.289 23 H -0.269 1.269 24 C 0.165 3.835 25 C 0.090 3.910 26 H 0.089 0.911 27 O -0.568 6.568 28 C 0.046 3.954 29 N -0.447 5.447 30 C 0.096 3.904 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.107 0.893 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.415 0.585 39 H 0.038 0.962 40 H 0.037 0.963 41 H 0.250 0.750 42 H 0.024 0.976 43 H 0.028 0.972 44 H 0.396 0.604 45 H 0.202 0.798 46 H 0.104 0.896 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.863 2.714 -12.152 34.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 H 0.099 0.901 4 C -0.154 4.154 5 C -0.073 4.073 6 C -0.054 4.054 7 N -0.208 5.208 8 C -0.223 4.223 9 C 0.389 3.611 10 O -0.464 6.464 11 N -0.341 5.341 12 C 0.046 3.954 13 H 0.094 0.906 14 C 0.006 3.994 15 N -0.349 5.349 16 C -0.377 4.377 17 H 0.100 0.900 18 C -0.257 4.257 19 N -0.597 5.597 20 Si 0.812 3.188 21 H -0.214 1.214 22 H -0.215 1.215 23 H -0.193 1.193 24 C 0.039 3.961 25 C 0.030 3.970 26 H 0.107 0.893 27 O -0.376 6.376 28 C -0.095 4.095 29 N -0.128 5.128 30 C -0.024 4.024 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.125 0.875 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.252 0.748 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.042 0.958 43 H 0.046 0.954 44 H 0.246 0.754 45 H 0.219 0.781 46 H 0.122 0.878 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -31.608 2.693 -11.403 33.709 hybrid contribution 1.308 0.100 0.731 1.502 sum -30.299 2.794 -10.671 32.245 Atomic orbital electron populations 1.21736 0.91495 1.03134 1.03394 1.21485 0.98149 0.99858 0.92616 0.90071 1.21791 0.92776 1.01668 0.99116 1.20479 0.95192 1.04203 0.87400 1.24297 0.86441 1.03434 0.91202 1.70296 1.17782 1.18787 1.13941 1.20337 0.93408 1.17036 0.91540 1.17320 0.82908 0.75387 0.85526 1.90762 1.87280 1.52805 1.15572 1.45494 1.05405 1.70772 1.12398 1.21797 0.82398 0.95963 0.95259 0.90575 1.21904 0.84080 0.94742 0.98699 1.44523 1.03940 1.34272 1.52159 1.19457 0.88682 1.09961 1.19579 0.90022 1.25710 0.99194 0.99256 1.01525 1.70140 1.17522 1.27875 1.44182 0.84993 0.77920 0.78232 0.77637 1.21366 1.21514 1.19328 1.21599 0.92290 0.89546 0.92686 1.23160 0.94224 0.81708 0.97933 0.89331 1.86436 1.62088 1.18646 1.70419 1.22635 0.88490 1.02186 0.96235 1.45563 1.09945 1.50362 1.06897 1.22610 0.74105 1.03738 1.01986 0.91669 0.90716 0.91578 0.90988 0.87459 0.87971 0.88022 0.74836 0.94408 0.94485 0.94076 0.95792 0.95405 0.75381 0.78084 0.87830 0.87385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.12 9.17 71.98 0.66 0.54 16 2 C -0.10 -0.44 2.73 -10.67 -0.03 -0.47 16 3 H 0.08 0.45 8.11 -2.39 -0.02 0.44 16 4 C -0.12 -0.54 5.25 30.77 0.16 -0.38 16 5 C -0.03 -0.36 6.33 30.11 0.19 -0.17 16 6 C 0.21 4.23 7.64 138.05 1.06 5.28 16 7 N -0.49 -13.67 11.00 -176.07 -1.94 -15.61 16 8 C -0.10 -2.96 6.98 40.52 0.28 -2.68 16 9 C 0.60 22.81 7.81 86.63 0.68 23.49 16 10 O -0.58 -25.88 16.52 -4.11 -0.07 -25.94 16 11 N -0.69 -25.39 5.19 -439.30 -2.28 -27.67 16 12 C 0.15 6.51 3.15 46.39 0.15 6.66 16 13 H 0.08 3.73 7.54 -2.39 -0.02 3.71 16 14 C 0.13 6.25 6.93 86.86 0.60 6.86 16 15 N -0.62 -34.30 3.39 -691.99 -2.35 -36.65 16 16 C -0.25 -14.68 10.28 84.03 0.86 -13.82 16 17 H 0.08 4.66 7.83 -2.91 -0.02 4.63 16 18 C -0.06 -3.74 5.49 84.86 0.47 -3.28 16 19 N -0.95 -57.93 10.31 21.65 0.22 -57.71 16 20 Si 0.98 47.17 29.55 68.60 2.03 49.20 16 21 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 22 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 23 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 24 C 0.16 8.46 5.15 86.73 0.45 8.91 16 25 C 0.09 3.64 3.98 31.78 0.13 3.76 16 26 H 0.09 3.08 8.00 -2.39 -0.02 3.06 16 27 O -0.57 -21.24 13.39 -148.98 -1.99 -23.24 16 28 C 0.05 1.10 11.32 83.84 0.95 2.04 16 29 N -0.45 -7.71 3.11 -512.73 -1.60 -9.31 16 30 C 0.10 0.72 6.25 86.45 0.54 1.26 16 31 H 0.06 0.04 8.14 -2.38 -0.02 0.02 16 32 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 33 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 34 H 0.07 0.38 8.12 -2.39 -0.02 0.36 16 35 H 0.11 0.07 8.12 -2.39 -0.02 0.06 16 36 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.41 13.53 8.28 -92.71 -0.77 12.77 16 39 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.25 14.73 8.31 -92.70 -0.77 13.96 16 42 H 0.02 1.39 7.29 -2.39 -0.02 1.37 16 43 H 0.03 1.53 7.51 -2.39 -0.02 1.51 16 44 H 0.40 11.08 9.12 -74.06 -0.68 10.40 16 45 H 0.20 4.04 8.06 -2.91 -0.02 4.01 16 46 H 0.10 0.53 8.12 -2.39 -0.02 0.51 16 47 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -82.31 381.79 -1.28 -83.59 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: -0.44 Total: 25.32 kcal Atomic # 6 Polarization: 30.89 SS G_CDS: 7.14 Total: 38.02 kcal Atomic # 7 Polarization: -139.01 SS G_CDS: -7.94 Total: -146.95 kcal Atomic # 8 Polarization: -47.12 SS G_CDS: -2.06 Total: -49.18 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -82.31 -1.28 -83.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077224770.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.119 kcal (2) G-P(sol) polarization free energy of solvation -82.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds