Wall clock time and date at job start Tue Mar 31 2020 19:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 109.45512 * 2 1 4 4 C 1.53108 * 109.46027 * 240.01901 * 2 1 3 5 5 C 1.53405 * 109.64091 * 169.92699 * 4 2 1 6 6 C 1.50719 * 108.33617 * 50.00329 * 5 4 2 7 7 N 1.34306 * 128.90615 * 163.30157 * 6 5 4 8 8 H 0.97005 * 124.97762 * 0.18640 * 7 6 5 9 9 N 1.28840 * 110.04322 * 180.20020 * 7 6 5 10 10 C 1.32204 * 110.15115 * 359.95037 * 9 7 6 11 11 C 1.47716 * 126.67934 * 179.97438 * 10 9 7 12 12 O 1.21562 * 119.99958 * 180.02562 * 11 10 9 13 13 N 1.34781 * 119.99818 * 0.03120 * 11 10 9 14 14 C 1.46491 * 119.99879 * 179.97438 * 13 11 10 15 15 H 1.09002 * 110.77898 * 31.75761 * 14 13 11 16 16 C 1.54335 * 110.85036 * 268.69058 * 14 13 11 17 17 N 1.47021 * 107.26526 * 219.67597 * 16 14 13 18 18 C 1.36934 * 125.64867 * 178.84756 * 17 16 14 19 19 H 1.08004 * 120.00035 * 342.88139 * 18 17 16 20 20 C 1.38812 * 120.00404 * 162.87654 * 18 17 16 21 21 N 1.31622 * 119.99728 * 331.97362 * 20 18 17 22 22 Si 1.86799 * 120.00267 * 151.97240 * 20 18 17 23 23 H 1.48506 * 109.46858 * 180.02562 * 22 20 18 24 24 H 1.48494 * 109.47388 * 60.00205 * 22 20 18 25 25 H 1.48501 * 109.46953 * 300.00008 * 22 20 18 26 26 C 1.47421 * 108.70506 * 358.58056 * 17 16 14 27 27 C 1.54910 * 104.83090 * 24.35923 * 26 17 16 28 28 H 1.08994 * 111.00813 * 81.06389 * 27 26 17 29 29 O 1.42902 * 111.00509 * 204.91819 * 27 26 17 30 30 C 1.35582 * 123.87851 * 343.72070 * 6 5 4 31 31 C 1.50388 * 124.61639 * 359.04777 * 30 6 5 32 32 H 1.09004 * 109.46980 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46877 * 299.98236 * 1 2 3 34 34 H 1.09004 * 109.47252 * 59.98299 * 1 2 3 35 35 H 1.08995 * 109.44588 * 49.87840 * 4 2 1 36 36 H 1.09003 * 109.44071 * 289.97704 * 4 2 1 37 37 H 1.08997 * 109.68943 * 290.29280 * 5 4 2 38 38 H 1.08997 * 109.69005 * 169.70811 * 5 4 2 39 39 H 0.97000 * 120.00055 * 359.97438 * 13 11 10 40 40 H 1.09002 * 109.99582 * 100.19542 * 16 14 13 41 41 H 1.08999 * 109.77686 * 339.02724 * 16 14 13 42 42 H 0.97004 * 120.00411 * 353.95791 * 21 20 18 43 43 H 1.09000 * 110.37006 * 143.19570 * 26 17 16 44 44 H 1.09005 * 110.36937 * 265.52137 * 26 17 16 45 45 H 0.96703 * 114.00038 * 298.54291 * 29 27 26 46 46 H 1.08996 * 109.86280 * 224.50781 * 31 30 6 47 47 H 1.09006 * 109.50328 * 103.96269 * 31 30 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0402 -0.7214 -1.2504 5 6 3.5532 -0.5086 -1.3873 6 6 4.2000 -0.8401 -0.0670 7 7 5.4920 -1.0919 0.1998 8 1 6.2062 -1.0892 -0.4568 9 7 5.6439 -1.3378 1.4553 10 6 4.4803 -1.2624 2.0782 11 6 4.2350 -1.4782 3.5188 12 8 3.1087 -1.3781 3.9653 13 7 5.2599 -1.7861 4.3382 14 6 5.0167 -1.9995 5.7669 15 1 4.0255 -2.4221 5.9316 16 6 5.1810 -0.6827 6.5549 17 7 5.8612 -1.0109 7.8163 18 6 6.2143 -0.1145 8.7893 19 1 6.2540 0.9408 8.5627 20 6 6.5212 -0.5619 10.0670 21 7 5.9812 -1.6723 10.5228 22 14 7.7006 0.4118 11.1395 23 1 7.8606 -0.2730 12.4474 24 1 7.1587 1.7770 11.3581 25 1 9.0205 0.5052 10.4654 26 6 6.0944 -2.4658 7.8629 27 6 6.1114 -2.9125 6.3797 28 1 7.0823 -2.7180 5.9242 29 8 5.7568 -4.2912 6.2559 30 6 3.5215 -0.9430 1.1023 31 6 2.0415 -0.7231 1.2534 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5136 0.8902 34 1 -0.3634 0.5141 -0.8899 35 1 1.5366 -0.3219 -2.1307 36 1 1.8299 -1.7876 -1.1653 37 1 3.7561 0.5308 -1.6450 38 1 3.9474 -1.1638 -2.1641 39 1 6.1585 -1.8662 3.9819 40 1 4.2031 -0.2484 6.7631 41 1 5.7853 0.0185 5.9794 42 1 5.3032 -2.1312 10.0024 43 1 7.0530 -2.6814 8.3350 44 1 5.2861 -2.9626 8.3995 45 1 6.3612 -4.8951 6.7090 46 1 1.8458 -0.1130 2.1352 47 1 1.5389 -1.6852 1.3534 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077920767.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:02 Heat of formation + Delta-G solvation = -1.058843 kcal Electronic energy + Delta-G solvation = -29054.012190 eV Core-core repulsion = 25045.231203 eV Total energy + Delta-G solvation = -4008.780987 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.02436 -39.50635 -37.87944 -37.79903 -35.24358 -34.13128 -32.95915 -31.83154 -31.70014 -29.87535 -28.28059 -27.31044 -26.65520 -24.59107 -23.69613 -23.55829 -21.50300 -20.72659 -20.29835 -19.89060 -19.27844 -17.95725 -17.63163 -17.06944 -16.78524 -16.13122 -15.69596 -15.02781 -14.70861 -14.47138 -14.40323 -14.07755 -13.85354 -13.78943 -13.53966 -13.47509 -13.37104 -12.97808 -12.70491 -12.54721 -12.34490 -12.16686 -11.94237 -11.62781 -11.47606 -11.23964 -10.99566 -10.83892 -10.73784 -10.68502 -10.56962 -10.09140 -10.02431 -10.01318 -9.73845 -9.48538 -9.41976 -8.83689 -8.75724 -8.41529 -6.98702 -6.11565 -3.17637 1.49082 1.93055 2.59796 3.29848 3.50159 3.51255 3.53591 3.71861 4.18083 4.29818 4.37200 4.44938 4.51687 4.62259 4.75036 4.91475 5.04788 5.07194 5.15547 5.20484 5.29533 5.33373 5.44873 5.48907 5.53775 5.57264 5.58863 5.61820 5.64573 5.70844 5.87409 5.92710 5.98817 6.01322 6.13810 6.17618 6.34790 6.44877 6.62479 6.74823 6.76362 6.89104 6.92237 7.54966 7.74181 7.83112 7.95356 8.39048 8.45867 8.98413 9.78166 10.30392 11.20551 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019815 B = 0.002482 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.723639 B =11277.785586 C =11542.937346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 H 0.072 0.928 4 C -0.110 4.110 5 C -0.046 4.046 6 C 0.006 3.994 7 N -0.375 5.375 8 H 0.444 0.556 9 N -0.263 5.263 10 C 0.001 3.999 11 C 0.603 3.397 12 O -0.528 6.528 13 N -0.701 5.701 14 C 0.143 3.857 15 H 0.105 0.895 16 C 0.129 3.871 17 N -0.598 5.598 18 C -0.337 4.337 19 H 0.068 0.932 20 C -0.025 4.025 21 N -0.916 5.916 22 Si 1.066 2.934 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.294 1.294 26 C 0.120 3.880 27 C 0.077 3.923 28 H 0.067 0.933 29 O -0.562 6.562 30 C -0.141 4.141 31 C -0.038 4.038 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.404 0.596 40 H 0.036 0.964 41 H 0.033 0.967 42 H 0.269 0.731 43 H 0.057 0.943 44 H 0.039 0.961 45 H 0.378 0.622 46 H 0.086 0.914 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.612 -0.224 -27.243 27.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 H 0.091 0.909 4 C -0.148 4.148 5 C -0.085 4.085 6 C -0.121 4.121 7 N -0.087 5.087 8 H 0.288 0.712 9 N -0.099 5.099 10 C -0.159 4.159 11 C 0.387 3.613 12 O -0.402 6.402 13 N -0.352 5.352 14 C 0.038 3.962 15 H 0.123 0.877 16 C 0.002 3.998 17 N -0.326 5.326 18 C -0.465 4.465 19 H 0.086 0.914 20 C -0.227 4.227 21 N -0.556 5.556 22 Si 0.895 3.105 23 H -0.210 1.210 24 H -0.219 1.219 25 H -0.221 1.221 26 C -0.007 4.007 27 C 0.017 3.983 28 H 0.085 0.915 29 O -0.367 6.367 30 C -0.151 4.151 31 C -0.076 4.076 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.239 0.761 40 H 0.054 0.946 41 H 0.051 0.949 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.057 0.943 45 H 0.225 0.775 46 H 0.104 0.896 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.999 -0.039 -25.481 25.657 hybrid contribution -0.127 -0.046 -1.806 1.811 sum -3.126 -0.085 -27.286 27.465 Atomic orbital electron populations 1.21816 0.94657 1.02065 1.01860 1.21271 0.95864 0.99734 0.94353 0.90942 1.21636 0.93200 1.01594 0.98330 1.20221 0.95582 1.02083 0.90618 1.21153 0.84944 1.07709 0.98298 1.42944 1.08165 1.50728 1.06893 0.71220 1.73845 1.24815 1.19725 0.91487 1.21652 0.90081 1.08947 0.95194 1.16845 0.84838 0.76776 0.82884 1.90790 1.22263 1.51387 1.75728 1.45772 1.10781 1.70310 1.08292 1.22005 1.00178 0.95667 0.78341 0.87687 1.21702 0.96455 0.93518 0.88130 1.44368 1.67544 1.02601 1.18129 1.19761 1.46257 0.89818 0.90658 0.91448 1.25801 1.02207 1.00207 0.94487 1.70788 1.26194 1.20470 1.38171 0.83514 0.76142 0.74837 0.75992 1.21039 1.21926 1.22104 1.22166 1.00345 0.86428 0.91722 1.23369 0.96141 0.80991 0.97847 0.91540 1.86460 1.56204 1.16254 1.77752 1.19892 0.97331 1.07240 0.90621 1.20062 0.88389 1.01198 0.97974 0.92493 0.92230 0.92717 0.90856 0.91263 0.89913 0.90326 0.76106 0.94571 0.94902 0.91929 0.92445 0.94285 0.77508 0.89568 0.90522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.16 37.16 0.34 -0.69 16 2 C -0.09 -0.75 2.70 -90.31 -0.24 -1.00 16 3 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 4 C -0.11 -0.67 5.19 -26.47 -0.14 -0.81 16 5 C -0.05 -0.27 6.31 -27.66 -0.17 -0.44 16 6 C 0.01 0.06 7.12 -82.45 -0.59 -0.53 16 7 N -0.37 -3.44 6.82 33.42 0.23 -3.21 16 8 H 0.44 2.27 8.96 -190.21 -1.71 0.57 16 9 N -0.26 -3.38 11.96 33.28 0.40 -2.98 16 10 C 0.00 0.02 7.12 -82.99 -0.59 -0.57 16 11 C 0.60 10.61 7.82 -12.39 -0.10 10.51 16 12 O -0.53 -10.64 15.45 5.31 0.08 -10.56 16 13 N -0.70 -11.96 5.10 -53.01 -0.27 -12.23 16 14 C 0.14 2.81 3.04 -66.09 -0.20 2.61 16 15 H 0.11 2.26 7.55 -51.93 -0.39 1.87 16 16 C 0.13 2.92 7.00 -3.06 -0.02 2.89 16 17 N -0.60 -15.55 3.29 -170.07 -0.56 -16.11 16 18 C -0.34 -9.69 10.02 -15.06 -0.15 -9.84 16 19 H 0.07 1.93 7.97 -52.48 -0.42 1.51 16 20 C -0.03 -0.73 5.09 -17.43 -0.09 -0.81 16 21 N -0.92 -27.80 12.93 55.49 0.72 -27.09 16 22 Si 1.07 25.44 30.00 -169.99 -5.10 20.34 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 C 0.12 2.79 5.03 -2.53 -0.01 2.78 16 27 C 0.08 1.44 4.06 -24.58 -0.10 1.34 16 28 H 0.07 1.15 8.01 -51.93 -0.42 0.74 16 29 O -0.56 -9.60 13.47 -35.23 -0.47 -10.08 16 30 C -0.14 -1.78 5.99 -104.88 -0.63 -2.41 16 31 C -0.04 -0.44 4.84 -27.79 -0.13 -0.57 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.33 8.11 -51.93 -0.42 -0.09 16 36 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.40 6.14 8.30 -40.82 -0.34 5.80 16 40 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.03 0.73 8.03 -51.93 -0.42 0.32 16 42 H 0.27 8.24 6.06 -40.82 -0.25 7.99 16 43 H 0.06 1.41 7.95 -51.93 -0.41 0.99 16 44 H 0.04 0.99 6.81 -51.93 -0.35 0.63 16 45 H 0.38 4.82 9.11 45.56 0.42 5.24 16 46 H 0.09 1.15 7.68 -51.93 -0.40 0.75 16 47 H 0.08 0.90 8.12 -51.93 -0.42 0.48 16 LS Contribution 378.60 15.07 5.71 5.71 Total: -1.00 -35.82 378.60 -9.80 -45.62 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -7.70 Total: 8.10 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -2.83 Total: 2.46 kcal Atomic # 7 Polarization: -62.12 SS G_CDS: 0.51 Total: -61.60 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.39 Total: -20.63 kcal Atomic # 14 Polarization: 25.44 SS G_CDS: -5.10 Total: 20.34 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.82 -9.80 -45.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077920767.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.564 kcal (2) G-P(sol) polarization free energy of solvation -35.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds