Wall clock time and date at job start Tue Mar 31 2020 19:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 109.45512 * 2 1 4 4 C 1.53108 * 109.46027 * 240.01901 * 2 1 3 5 5 C 1.53405 * 109.64091 * 169.92699 * 4 2 1 6 6 C 1.50719 * 108.33617 * 50.00329 * 5 4 2 7 7 N 1.34306 * 128.90615 * 163.30157 * 6 5 4 8 8 H 0.97005 * 124.97762 * 0.18640 * 7 6 5 9 9 N 1.28840 * 110.04322 * 180.20020 * 7 6 5 10 10 C 1.32204 * 110.15115 * 359.95037 * 9 7 6 11 11 C 1.47716 * 126.67934 * 179.97438 * 10 9 7 12 12 O 1.21562 * 119.99958 * 180.02562 * 11 10 9 13 13 N 1.34781 * 119.99818 * 0.03120 * 11 10 9 14 14 C 1.46491 * 119.99879 * 179.97438 * 13 11 10 15 15 H 1.09002 * 110.77898 * 31.75761 * 14 13 11 16 16 C 1.54335 * 110.85036 * 268.69058 * 14 13 11 17 17 N 1.47021 * 107.26526 * 219.67597 * 16 14 13 18 18 C 1.36934 * 125.64867 * 178.84756 * 17 16 14 19 19 H 1.08004 * 120.00035 * 342.88139 * 18 17 16 20 20 C 1.38812 * 120.00404 * 162.87654 * 18 17 16 21 21 N 1.31622 * 119.99728 * 331.97362 * 20 18 17 22 22 Si 1.86799 * 120.00267 * 151.97240 * 20 18 17 23 23 H 1.48506 * 109.46858 * 180.02562 * 22 20 18 24 24 H 1.48494 * 109.47388 * 60.00205 * 22 20 18 25 25 H 1.48501 * 109.46953 * 300.00008 * 22 20 18 26 26 C 1.47421 * 108.70506 * 358.58056 * 17 16 14 27 27 C 1.54910 * 104.83090 * 24.35923 * 26 17 16 28 28 H 1.08994 * 111.00813 * 81.06389 * 27 26 17 29 29 O 1.42902 * 111.00509 * 204.91819 * 27 26 17 30 30 C 1.35582 * 123.87851 * 343.72070 * 6 5 4 31 31 C 1.50388 * 124.61639 * 359.04777 * 30 6 5 32 32 H 1.09004 * 109.46980 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46877 * 299.98236 * 1 2 3 34 34 H 1.09004 * 109.47252 * 59.98299 * 1 2 3 35 35 H 1.08995 * 109.44588 * 49.87840 * 4 2 1 36 36 H 1.09003 * 109.44071 * 289.97704 * 4 2 1 37 37 H 1.08997 * 109.68943 * 290.29280 * 5 4 2 38 38 H 1.08997 * 109.69005 * 169.70811 * 5 4 2 39 39 H 0.97000 * 120.00055 * 359.97438 * 13 11 10 40 40 H 1.09002 * 109.99582 * 100.19542 * 16 14 13 41 41 H 1.08999 * 109.77686 * 339.02724 * 16 14 13 42 42 H 0.97004 * 120.00411 * 353.95791 * 21 20 18 43 43 H 1.09000 * 110.37006 * 143.19570 * 26 17 16 44 44 H 1.09005 * 110.36937 * 265.52137 * 26 17 16 45 45 H 0.96703 * 114.00038 * 298.54291 * 29 27 26 46 46 H 1.08996 * 109.86280 * 224.50781 * 31 30 6 47 47 H 1.09006 * 109.50328 * 103.96269 * 31 30 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0402 -0.7214 -1.2504 5 6 3.5532 -0.5086 -1.3873 6 6 4.2000 -0.8401 -0.0670 7 7 5.4920 -1.0919 0.1998 8 1 6.2062 -1.0892 -0.4568 9 7 5.6439 -1.3378 1.4553 10 6 4.4803 -1.2624 2.0782 11 6 4.2350 -1.4782 3.5188 12 8 3.1087 -1.3781 3.9653 13 7 5.2599 -1.7861 4.3382 14 6 5.0167 -1.9995 5.7669 15 1 4.0255 -2.4221 5.9316 16 6 5.1810 -0.6827 6.5549 17 7 5.8612 -1.0109 7.8163 18 6 6.2143 -0.1145 8.7893 19 1 6.2540 0.9408 8.5627 20 6 6.5212 -0.5619 10.0670 21 7 5.9812 -1.6723 10.5228 22 14 7.7006 0.4118 11.1395 23 1 7.8606 -0.2730 12.4474 24 1 7.1587 1.7770 11.3581 25 1 9.0205 0.5052 10.4654 26 6 6.0944 -2.4658 7.8629 27 6 6.1114 -2.9125 6.3797 28 1 7.0823 -2.7180 5.9242 29 8 5.7568 -4.2912 6.2559 30 6 3.5215 -0.9430 1.1023 31 6 2.0415 -0.7231 1.2534 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5136 0.8902 34 1 -0.3634 0.5141 -0.8899 35 1 1.5366 -0.3219 -2.1307 36 1 1.8299 -1.7876 -1.1653 37 1 3.7561 0.5308 -1.6450 38 1 3.9474 -1.1638 -2.1641 39 1 6.1585 -1.8662 3.9819 40 1 4.2031 -0.2484 6.7631 41 1 5.7853 0.0185 5.9794 42 1 5.3032 -2.1312 10.0024 43 1 7.0530 -2.6814 8.3350 44 1 5.2861 -2.9626 8.3995 45 1 6.3612 -4.8951 6.7090 46 1 1.8458 -0.1130 2.1352 47 1 1.5389 -1.6852 1.3534 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077920767.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:01 Heat of formation + Delta-G solvation = -29.419458 kcal Electronic energy + Delta-G solvation = -29055.241999 eV Core-core repulsion = 25045.231203 eV Total energy + Delta-G solvation = -4010.010795 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.91755 -41.03858 -39.49512 -38.47035 -36.91814 -35.78059 -34.01640 -33.48760 -32.53250 -30.79991 -30.04674 -29.04202 -27.44653 -26.41908 -24.98670 -24.27213 -22.58325 -22.31135 -21.86925 -21.24954 -20.05761 -19.69300 -18.79016 -18.48494 -18.11997 -17.29572 -17.05956 -16.18598 -16.14383 -15.80185 -15.56933 -15.52141 -15.38397 -15.13055 -14.89165 -14.49165 -14.28583 -14.14390 -14.04218 -13.94513 -13.47139 -13.35794 -13.30484 -12.98675 -12.67697 -12.54498 -12.48792 -11.91440 -11.89762 -11.81558 -11.75713 -11.70467 -11.62903 -11.45036 -11.23120 -11.02713 -10.63234 -10.49860 -10.19967 -9.66315 -9.14975 -8.39755 -5.43844 0.40107 1.04262 1.57527 1.65005 1.72606 1.85228 2.06490 2.22625 2.58673 2.87136 3.13024 3.24544 3.42539 3.58040 3.64506 3.78348 3.85029 3.91431 3.93732 4.08672 4.19527 4.24160 4.28302 4.35810 4.48717 4.59573 4.68770 4.71364 4.77868 4.81273 4.84600 4.91581 4.98549 5.00266 5.02316 5.07469 5.18681 5.27771 5.30749 5.43340 5.46718 5.55678 5.57501 6.06530 6.21558 6.34030 6.70490 6.77072 6.79965 7.03783 7.59822 8.14130 8.91043 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.019815 B = 0.002482 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.723639 B =11277.785586 C =11542.937346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 H 0.073 0.927 4 C -0.107 4.107 5 C -0.044 4.044 6 C 0.031 3.969 7 N -0.352 5.352 8 H 0.464 0.536 9 N -0.270 5.270 10 C -0.032 4.032 11 C 0.599 3.401 12 O -0.564 6.564 13 N -0.692 5.692 14 C 0.157 3.843 15 H 0.083 0.917 16 C 0.131 3.869 17 N -0.617 5.617 18 C -0.354 4.354 19 H 0.062 0.938 20 C -0.074 4.074 21 N -0.940 5.940 22 Si 1.121 2.879 23 H -0.289 1.289 24 H -0.276 1.276 25 H -0.275 1.275 26 C 0.125 3.875 27 C 0.103 3.897 28 H 0.094 0.906 29 O -0.564 6.564 30 C -0.171 4.171 31 C -0.037 4.037 32 H 0.055 0.945 33 H 0.045 0.955 34 H 0.075 0.925 35 H 0.101 0.899 36 H 0.063 0.937 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.416 0.584 40 H 0.012 0.988 41 H 0.040 0.960 42 H 0.254 0.746 43 H 0.044 0.956 44 H 0.013 0.987 45 H 0.399 0.601 46 H 0.053 0.947 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.033 0.231 -30.906 30.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.107 4.107 3 H 0.091 0.909 4 C -0.145 4.145 5 C -0.082 4.082 6 C -0.097 4.097 7 N -0.067 5.067 8 H 0.313 0.687 9 N -0.108 5.108 10 C -0.190 4.190 11 C 0.385 3.615 12 O -0.441 6.441 13 N -0.343 5.343 14 C 0.050 3.950 15 H 0.101 0.899 16 C 0.005 3.995 17 N -0.345 5.345 18 C -0.482 4.482 19 H 0.080 0.920 20 C -0.270 4.270 21 N -0.582 5.582 22 Si 0.944 3.056 23 H -0.215 1.215 24 H -0.202 1.202 25 H -0.201 1.201 26 C -0.002 4.002 27 C 0.043 3.957 28 H 0.112 0.888 29 O -0.372 6.372 30 C -0.181 4.181 31 C -0.076 4.076 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.120 0.880 36 H 0.082 0.918 37 H 0.123 0.877 38 H 0.129 0.871 39 H 0.253 0.747 40 H 0.030 0.970 41 H 0.058 0.942 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.031 0.969 45 H 0.250 0.750 46 H 0.071 0.929 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.384 0.398 -29.196 29.232 hybrid contribution -0.676 -0.192 -0.750 1.028 sum -2.060 0.206 -29.946 30.018 Atomic orbital electron populations 1.21814 0.94133 1.02126 1.02221 1.21247 0.96325 0.99474 0.93685 0.90859 1.21655 0.93790 1.01112 0.97962 1.20470 0.94743 1.04103 0.88903 1.21672 0.84397 1.04762 0.98905 1.43057 1.08999 1.48539 1.06150 0.68732 1.73753 1.23938 1.20160 0.92979 1.21315 0.91834 1.11875 0.93943 1.17303 0.84210 0.75711 0.84234 1.90763 1.23674 1.52873 1.76763 1.45580 1.11466 1.70320 1.06904 1.21565 0.99533 0.94131 0.79737 0.89931 1.21705 0.94911 0.95317 0.87598 1.44616 1.67958 1.03517 1.18433 1.20044 1.46201 0.90307 0.91620 0.92008 1.27324 1.03077 1.00580 0.96028 1.70912 1.27034 1.21752 1.38458 0.82797 0.74674 0.74050 0.74077 1.21474 1.20185 1.20124 1.22099 0.98439 0.84982 0.94649 1.23018 0.96740 0.81725 0.94235 0.88850 1.86431 1.57341 1.15496 1.77891 1.20148 0.97723 1.08713 0.91491 1.20010 0.88442 1.00368 0.98736 0.92607 0.93605 0.90605 0.88038 0.91806 0.87713 0.87135 0.74715 0.97042 0.94180 0.93516 0.93808 0.96910 0.74983 0.92852 0.91849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.16 71.99 0.66 -1.27 16 2 C -0.09 -1.31 2.70 -10.60 -0.03 -1.34 16 3 H 0.07 1.08 8.12 -2.39 -0.02 1.06 16 4 C -0.11 -0.95 5.19 30.77 0.16 -0.79 16 5 C -0.04 -0.30 6.31 29.99 0.19 -0.11 16 6 C 0.03 0.50 7.12 41.57 0.30 0.80 16 7 N -0.35 -5.41 6.82 -48.18 -0.33 -5.74 16 8 H 0.46 2.92 8.96 -219.80 -1.97 0.95 16 9 N -0.27 -6.55 11.96 -48.62 -0.58 -7.13 16 10 C -0.03 -0.95 7.12 42.14 0.30 -0.65 16 11 C 0.60 21.94 7.82 86.75 0.68 22.62 16 12 O -0.56 -24.34 15.45 -3.91 -0.06 -24.40 16 13 N -0.69 -23.91 5.10 -439.90 -2.25 -26.16 16 14 C 0.16 6.34 3.04 46.19 0.14 6.48 16 15 H 0.08 3.75 7.55 -2.39 -0.02 3.73 16 16 C 0.13 6.19 7.00 86.73 0.61 6.80 16 17 N -0.62 -33.13 3.29 -691.97 -2.28 -35.41 16 18 C -0.35 -20.80 10.02 84.03 0.84 -19.96 16 19 H 0.06 3.62 7.97 -2.91 -0.02 3.60 16 20 C -0.07 -4.32 5.09 84.86 0.43 -3.89 16 21 N -0.94 -58.61 12.93 21.65 0.28 -58.33 16 22 Si 1.12 51.48 30.00 68.60 2.06 53.54 16 23 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 24 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 25 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 26 C 0.12 5.98 5.03 86.86 0.44 6.42 16 27 C 0.10 3.86 4.06 31.99 0.13 3.99 16 28 H 0.09 3.06 8.01 -2.39 -0.02 3.04 16 29 O -0.56 -18.75 13.47 -148.98 -2.01 -20.76 16 30 C -0.17 -4.25 5.99 -20.03 -0.12 -4.37 16 31 C -0.04 -0.89 4.84 29.91 0.14 -0.75 16 32 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.04 0.71 8.14 -2.39 -0.02 0.70 16 34 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 35 H 0.10 0.41 8.11 -2.39 -0.02 0.39 16 36 H 0.06 0.67 8.12 -2.39 -0.02 0.65 16 37 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 39 H 0.42 12.35 8.30 -92.71 -0.77 11.58 16 40 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.04 1.83 8.03 -2.39 -0.02 1.81 16 42 H 0.25 16.27 6.06 -92.71 -0.56 15.71 16 43 H 0.04 2.19 7.95 -2.39 -0.02 2.18 16 44 H 0.01 0.69 6.81 -2.38 -0.02 0.68 16 45 H 0.40 9.57 9.11 -74.06 -0.67 8.90 16 46 H 0.05 1.58 7.68 -2.39 -0.02 1.56 16 47 H 0.06 1.61 8.12 -2.38 -0.02 1.59 16 Total: -1.00 -82.18 378.60 -2.48 -84.66 By element: Atomic # 1 Polarization: 27.94 SS G_CDS: -2.18 Total: 25.75 kcal Atomic # 6 Polarization: 9.11 SS G_CDS: 4.87 Total: 13.98 kcal Atomic # 7 Polarization: -127.61 SS G_CDS: -5.15 Total: -132.77 kcal Atomic # 8 Polarization: -43.10 SS G_CDS: -2.07 Total: -45.16 kcal Atomic # 14 Polarization: 51.48 SS G_CDS: 2.06 Total: 53.54 kcal Total: -82.18 -2.48 -84.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077920767.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.242 kcal (2) G-P(sol) polarization free energy of solvation -82.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds