Wall clock time and date at job start Tue Mar 31 2020 19:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.57739 * 2 1 4 4 C 1.53255 * 109.68982 * 239.66030 * 2 1 3 5 5 C 1.53166 * 109.44414 * 189.91085 * 4 2 1 6 6 C 1.53374 * 109.22083 * 69.33194 * 5 4 2 7 7 C 1.51110 * 108.25156 * 311.15134 * 6 5 4 8 8 N 1.30558 * 127.09794 * 196.39489 * 7 6 5 9 9 C 1.33451 * 109.68985 * 180.02562 * 8 7 6 10 10 C 1.36837 * 107.83303 * 359.57335 * 9 8 7 11 11 C 1.46757 * 126.91513 * 180.30124 * 10 9 8 12 12 O 1.21683 * 120.00431 * 170.89045 * 11 10 9 13 13 N 1.34778 * 119.99767 * 350.88773 * 11 10 9 14 14 C 1.46506 * 119.99859 * 180.32945 * 13 11 10 15 15 H 1.08994 * 110.64382 * 36.68526 * 14 13 11 16 16 C 1.54329 * 110.71903 * 273.54455 * 14 13 11 17 17 N 1.47018 * 107.27169 * 219.44462 * 16 14 13 18 18 C 1.36932 * 125.64966 * 178.90301 * 17 16 14 19 19 H 1.08004 * 120.00022 * 0.02562 * 18 17 16 20 20 C 1.38817 * 120.00303 * 179.97438 * 18 17 16 21 21 N 1.31621 * 119.99493 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00046 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47423 * 60.00201 * 22 20 18 24 24 H 1.48500 * 109.47259 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47223 * 300.00116 * 22 20 18 26 26 C 1.47429 * 108.70420 * 358.94169 * 17 16 14 27 27 C 1.54916 * 104.83112 * 24.13045 * 26 17 16 28 28 H 1.08993 * 110.99905 * 204.91862 * 27 26 17 29 29 O 1.42894 * 111.00479 * 81.06482 * 27 26 17 30 30 N 1.34880 * 123.91699 * 16.02364 * 7 6 5 31 31 H 1.08993 * 109.47617 * 336.63480 * 1 2 3 32 32 H 1.09007 * 109.46847 * 96.63739 * 1 2 3 33 33 H 1.09006 * 109.47279 * 216.63197 * 1 2 3 34 34 H 1.08998 * 109.48275 * 309.90107 * 4 2 1 35 35 H 1.09002 * 109.47693 * 69.92434 * 4 2 1 36 36 H 1.08991 * 109.51557 * 189.26150 * 5 4 2 37 37 H 1.09005 * 109.51153 * 309.41532 * 5 4 2 38 38 H 1.09003 * 109.70755 * 70.84034 * 6 5 4 39 39 H 1.09005 * 109.71157 * 191.41822 * 6 5 4 40 40 H 1.07998 * 126.08506 * 179.83567 * 9 8 7 41 41 H 0.97004 * 120.00335 * 0.32948 * 13 11 10 42 42 H 1.09000 * 109.88321 * 338.86307 * 16 14 13 43 43 H 1.08999 * 109.88011 * 100.02408 * 16 14 13 44 44 H 0.97002 * 119.99408 * 179.97438 * 21 20 18 45 45 H 1.09002 * 110.36578 * 142.96538 * 26 17 16 46 46 H 1.08995 * 110.36833 * 265.29066 * 26 17 16 47 47 H 0.96700 * 114.00274 * 67.80517 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0464 -0.7289 -1.2453 5 6 3.5577 -0.9438 -1.1204 6 6 3.8318 -1.9738 -0.0175 7 6 3.0411 -1.5772 1.2076 8 7 3.2163 -2.0021 2.4296 9 6 2.3244 -1.4262 3.2382 10 6 1.5534 -0.5865 2.4812 11 6 0.4497 0.2593 2.9503 12 8 -0.0460 1.0825 2.2036 13 7 -0.0151 0.1244 4.2082 14 6 -1.1218 0.9638 4.6742 15 1 -1.8417 1.1302 3.8729 16 6 -0.5950 2.3068 5.2226 17 7 -1.3917 2.6344 6.4139 18 6 -1.2252 3.7385 7.2066 19 1 -0.4544 4.4586 6.9745 20 6 -2.0477 3.9329 8.3078 21 7 -2.9873 3.0556 8.5903 22 14 -1.8209 5.4394 9.3886 23 1 -2.0151 6.6664 8.5747 24 1 -2.8164 5.4129 10.4901 25 1 -0.4504 5.4367 9.9604 26 6 -2.3991 1.5768 6.6145 27 6 -1.8090 0.3286 5.9118 28 1 -2.5985 -0.3595 5.6100 29 8 -0.8536 -0.3264 6.7485 30 7 2.0207 -0.6953 1.1918 31 1 -0.3634 0.9433 0.4075 32 1 -0.3633 -0.1188 -1.0209 33 1 -0.3634 -0.8247 0.6132 34 1 1.5482 -1.6943 -1.3342 35 1 1.8367 -0.1287 -2.1308 36 1 3.9529 -1.3106 -2.0676 37 1 4.0397 0.0000 -0.8649 38 1 3.5192 -2.9629 -0.3524 39 1 4.8958 -1.9852 0.2188 40 1 2.2309 -1.5900 4.3015 41 1 0.3831 -0.5285 4.8050 42 1 0.4560 2.2094 5.4947 43 1 -0.7146 3.0867 4.4706 44 1 -3.5618 3.1913 9.3601 45 1 -2.5389 1.3828 7.6780 46 1 -3.3445 1.8608 6.1524 47 1 -1.2365 -0.7385 7.5350 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083477177.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:49 Heat of formation + Delta-G solvation = 10.319453 kcal Electronic energy + Delta-G solvation = -29751.473290 eV Core-core repulsion = 25743.185703 eV Total energy + Delta-G solvation = -4008.287587 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.61356 -39.48193 -37.78206 -37.32849 -34.74388 -34.20167 -33.71142 -31.78671 -30.87797 -29.74503 -28.39027 -27.41216 -26.69555 -24.58895 -23.13958 -23.10490 -22.13669 -20.67310 -20.42366 -19.67678 -19.16651 -17.95696 -17.19710 -16.69957 -16.20182 -15.74581 -15.36481 -15.02986 -14.94982 -14.91043 -14.73508 -14.29797 -14.14991 -13.93468 -13.56619 -13.21680 -13.02295 -12.92443 -12.66215 -12.47293 -12.36730 -11.79224 -11.77504 -11.50633 -11.48647 -11.34515 -11.09318 -10.99856 -10.81129 -10.55473 -10.39099 -10.35636 -10.04937 -9.83942 -9.76017 -9.64149 -9.24768 -8.77737 -8.68623 -8.43736 -6.85520 -5.69753 -3.09433 1.31245 2.38302 2.76288 3.37630 3.40690 3.43001 3.44416 3.46424 3.97138 4.15826 4.26242 4.32003 4.47381 4.57113 4.80105 4.86800 4.92862 4.97660 5.10825 5.23540 5.29194 5.31554 5.34259 5.35666 5.39435 5.48218 5.51222 5.59814 5.67040 5.70431 5.84672 5.89729 5.98219 6.11778 6.19250 6.27766 6.47605 6.59911 6.69447 6.94817 6.96874 7.24628 7.55384 7.68953 7.74563 7.87779 8.11695 8.31023 8.41762 9.17912 9.78835 10.41958 11.35445 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.023348 B = 0.002651 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.947983 B =10557.903078 C =10790.530447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.134 3.866 3 H 0.095 0.905 4 C -0.132 4.132 5 C -0.128 4.128 6 C -0.034 4.034 7 C 0.222 3.778 8 N -0.493 5.493 9 C 0.033 3.967 10 C -0.073 4.073 11 C 0.587 3.413 12 O -0.544 6.544 13 N -0.693 5.693 14 C 0.147 3.853 15 H 0.101 0.899 16 C 0.132 3.868 17 N -0.596 5.596 18 C -0.216 4.216 19 H 0.077 0.923 20 C -0.012 4.012 21 N -0.928 5.928 22 Si 0.917 3.083 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.127 3.873 27 C 0.068 3.932 28 H 0.059 0.941 29 O -0.561 6.561 30 N -0.417 5.417 31 H 0.108 0.892 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.179 0.821 41 H 0.410 0.590 42 H 0.030 0.970 43 H 0.028 0.972 44 H 0.253 0.747 45 H 0.116 0.884 46 H 0.022 0.978 47 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.723 -12.511 -18.320 23.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.032 3.968 3 H 0.113 0.887 4 C -0.170 4.170 5 C -0.166 4.166 6 C -0.073 4.073 7 C -0.040 4.040 8 N -0.211 5.211 9 C -0.121 4.121 10 C -0.191 4.191 11 C 0.374 3.626 12 O -0.423 6.423 13 N -0.343 5.343 14 C 0.042 3.958 15 H 0.119 0.881 16 C 0.005 3.995 17 N -0.323 5.323 18 C -0.345 4.345 19 H 0.095 0.905 20 C -0.207 4.207 21 N -0.577 5.577 22 Si 0.747 3.253 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.212 1.212 26 C 0.002 3.998 27 C 0.007 3.993 28 H 0.077 0.923 29 O -0.367 6.367 30 N -0.098 5.098 31 H 0.126 0.874 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.110 0.890 39 H 0.116 0.884 40 H 0.196 0.804 41 H 0.246 0.754 42 H 0.048 0.952 43 H 0.046 0.954 44 H 0.063 0.937 45 H 0.133 0.867 46 H 0.040 0.960 47 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 9.179 -12.050 -19.018 24.314 hybrid contribution -0.761 0.927 1.145 1.658 sum 8.419 -11.123 -17.873 22.672 Atomic orbital electron populations 1.22502 0.91799 1.06153 1.01726 1.21685 0.96958 0.96289 0.81867 0.88746 1.22079 0.96215 1.01838 0.96838 1.21732 0.95940 0.99829 0.99132 1.20259 0.99414 0.99607 0.88014 1.23429 0.91546 0.93297 0.95751 1.69918 1.24966 1.26518 0.99711 1.22731 0.93733 0.95904 0.99768 1.20658 1.04535 1.08380 0.85481 1.16800 0.81059 0.82461 0.82317 1.90688 1.60157 1.37075 1.54403 1.45518 1.36200 1.40418 1.12195 1.22175 0.87714 0.91176 0.94754 0.88135 1.21593 0.95308 0.92837 0.89781 1.44273 1.36460 1.24143 1.27376 1.19052 1.13640 0.97660 1.04120 0.90480 1.24753 0.98027 0.99085 0.98851 1.69706 1.22532 1.35772 1.29679 0.86110 0.77208 0.82047 0.79903 1.21218 1.21565 1.21151 1.22608 0.90183 0.84315 1.02737 1.23576 0.90047 0.95236 0.90405 0.92297 1.86238 1.37240 1.74230 1.38947 1.45380 1.25267 1.32047 1.07119 0.87394 0.92054 0.92458 0.90547 0.89107 0.89769 0.90976 0.89043 0.88424 0.80359 0.75405 0.95195 0.95377 0.93670 0.86660 0.95968 0.77202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 7.96 37.16 0.30 -1.56 16 2 C 0.13 1.39 3.31 -67.83 -0.22 1.17 16 3 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 4 C -0.13 -0.89 5.04 -26.51 -0.13 -1.02 16 5 C -0.13 -0.75 5.96 -26.45 -0.16 -0.91 16 6 C -0.03 -0.26 6.33 -27.49 -0.17 -0.43 16 7 C 0.22 2.68 7.64 -155.31 -1.19 1.50 16 8 N -0.49 -6.95 11.20 -10.35 -0.12 -7.07 16 9 C 0.03 0.45 11.37 -17.36 -0.20 0.26 16 10 C -0.07 -1.06 6.43 -82.35 -0.53 -1.59 16 11 C 0.59 9.41 7.25 -12.82 -0.09 9.32 16 12 O -0.54 -9.65 12.07 5.20 0.06 -9.58 16 13 N -0.69 -10.95 5.07 -53.30 -0.27 -11.22 16 14 C 0.15 2.67 3.12 -66.09 -0.21 2.47 16 15 H 0.10 1.84 7.70 -51.93 -0.40 1.44 16 16 C 0.13 2.92 6.99 -3.06 -0.02 2.90 16 17 N -0.60 -15.29 3.39 -170.06 -0.58 -15.87 16 18 C -0.22 -6.08 10.27 -15.06 -0.15 -6.24 16 19 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 20 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 21 N -0.93 -26.40 10.09 55.49 0.56 -25.84 16 22 Si 0.92 22.13 29.55 -169.99 -5.02 17.11 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 C 0.13 2.94 5.62 -2.52 -0.01 2.93 16 27 C 0.07 1.21 4.28 -24.58 -0.11 1.11 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 O -0.56 -9.36 12.23 -35.23 -0.43 -9.79 16 30 N -0.42 -5.29 2.94 -102.73 -0.30 -5.59 16 31 H 0.11 1.49 5.54 -51.93 -0.29 1.20 16 32 H 0.06 0.53 7.76 -51.93 -0.40 0.13 16 33 H 0.06 0.74 7.31 -51.93 -0.38 0.36 16 34 H 0.08 0.51 8.10 -51.93 -0.42 0.09 16 35 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 38 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.18 2.09 7.53 -52.49 -0.40 1.70 16 41 H 0.41 5.95 6.57 -40.82 -0.27 5.68 16 42 H 0.03 0.69 8.03 -51.93 -0.42 0.28 16 43 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.25 7.00 8.31 -40.82 -0.34 6.67 16 45 H 0.12 2.95 5.87 -51.93 -0.31 2.64 16 46 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.38 5.09 9.12 45.56 0.42 5.50 16 LS Contribution 367.85 15.07 5.54 5.54 Total: -1.00 -33.37 367.85 -9.76 -43.13 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -6.21 Total: 9.74 kcal Atomic # 6 Polarization: 12.45 SS G_CDS: -3.00 Total: 9.45 kcal Atomic # 7 Polarization: -64.89 SS G_CDS: -0.71 Total: -65.59 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.37 Total: -19.37 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.37 -9.76 -43.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083477177.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.450 kcal (2) G-P(sol) polarization free energy of solvation -33.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds