Wall clock time and date at job start Tue Mar 31 2020 19:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.45576 * 2 1 4 4 C 1.53141 * 109.46421 * 119.96915 * 2 1 3 5 5 C 1.53389 * 109.25221 * 189.82576 * 4 2 1 6 6 C 1.51104 * 108.19416 * 311.05684 * 5 4 2 7 7 N 1.29788 * 127.17053 * 196.27906 * 6 5 4 8 8 C 1.35894 * 108.84770 * 180.02562 * 7 6 5 9 9 C 1.47323 * 126.21274 * 179.87888 * 8 7 6 10 10 O 1.21621 * 120.00074 * 179.68108 * 9 8 7 11 11 N 1.34780 * 119.99856 * 359.68834 * 9 8 7 12 12 C 1.46500 * 120.00172 * 180.02562 * 11 9 8 13 13 H 1.09007 * 110.91156 * 31.09455 * 12 11 9 14 14 C 1.55127 * 111.19109 * 267.18369 * 12 11 9 15 15 N 1.47418 * 104.72049 * 279.18830 * 14 12 11 16 16 C 1.36939 * 125.64946 * 155.81793 * 15 14 12 17 17 H 1.08004 * 119.99325 * 9.51727 * 16 15 14 18 18 C 1.38809 * 120.00199 * 189.51086 * 16 15 14 19 19 N 1.31623 * 119.99774 * 208.93706 * 18 16 15 20 20 Si 1.86800 * 119.99975 * 28.94163 * 18 16 15 21 21 H 1.48494 * 109.47052 * 275.29749 * 20 18 16 22 22 H 1.48497 * 109.47095 * 155.29577 * 20 18 16 23 23 H 1.48506 * 109.46908 * 35.29899 * 20 18 16 24 24 C 1.47018 * 108.70509 * 335.55383 * 15 14 12 25 25 C 1.54323 * 107.27391 * 1.28535 * 24 15 14 26 26 H 1.08992 * 110.72354 * 263.65910 * 25 24 15 27 27 O 1.42897 * 110.72146 * 140.55188 * 25 24 15 28 28 C 1.36567 * 107.57764 * 359.60771 * 8 7 6 29 29 N 1.34873 * 106.78965 * 0.28563 * 28 8 7 30 30 C 1.46580 * 127.50544 * 179.86061 * 29 28 8 31 31 H 1.09006 * 109.46950 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47606 * 299.97546 * 1 2 3 33 33 H 1.08997 * 109.47111 * 59.97693 * 1 2 3 34 34 H 1.09000 * 109.50414 * 309.76224 * 4 2 1 35 35 H 1.09000 * 109.50805 * 69.88905 * 4 2 1 36 36 H 1.08999 * 109.71432 * 70.73346 * 5 4 2 37 37 H 1.09001 * 109.71700 * 191.33262 * 5 4 2 38 38 H 0.97000 * 119.99767 * 359.97438 * 11 9 8 39 39 H 1.09002 * 110.49644 * 160.34511 * 14 12 11 40 40 H 1.09000 * 110.34346 * 37.95531 * 14 12 11 41 41 H 0.96999 * 120.00059 * 4.82165 * 19 18 16 42 42 H 1.09002 * 109.88762 * 120.70676 * 24 15 14 43 43 H 1.09000 * 109.88266 * 241.87111 * 24 15 14 44 44 H 0.96698 * 113.99483 * 61.46274 * 27 25 24 45 45 H 1.08007 * 126.60824 * 180.27658 * 28 8 7 46 46 H 1.08997 * 109.58295 * 316.99959 * 30 29 28 47 47 H 1.09001 * 109.58200 * 77.27678 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0402 -0.7213 1.2508 5 6 3.5541 -0.5079 1.3755 6 6 4.1861 -0.8193 0.0388 7 7 5.4414 -1.0451 -0.2015 8 6 5.5980 -1.2839 -1.5301 9 6 6.8667 -1.5816 -2.2173 10 8 6.8758 -1.7837 -3.4166 11 7 8.0172 -1.6300 -1.5169 12 6 9.2789 -1.9255 -2.2003 13 1 9.2619 -1.5557 -3.2256 14 6 9.5937 -3.4441 -2.1646 15 7 10.1737 -3.6751 -0.8291 16 6 10.1796 -4.8681 -0.1570 17 1 9.8736 -5.7732 -0.6608 18 6 10.5788 -4.9144 1.1717 19 7 11.1280 -6.0080 1.6561 20 14 10.3364 -3.4245 2.2721 21 1 11.4800 -2.4926 2.1025 22 1 10.2608 -3.8627 3.6889 23 1 9.0756 -2.7339 1.8996 24 6 10.7505 -2.4139 -0.3410 25 6 10.4851 -1.3413 -1.4183 26 1 11.3513 -1.2265 -2.0698 27 8 10.1395 -0.0931 -0.8147 28 6 4.3649 -1.2038 -2.1117 29 7 3.4887 -0.9127 -1.1286 30 6 2.0406 -0.7218 -1.2516 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5134 0.8901 33 1 -0.3633 0.5142 -0.8898 34 1 1.5419 -0.3179 2.1323 35 1 1.8284 -1.7873 1.1682 36 1 3.7583 0.5279 1.6466 37 1 3.9578 -1.1739 2.1381 38 1 8.0099 -1.4685 -0.5605 39 1 10.3138 -3.7029 -2.9409 40 1 8.6787 -4.0237 -2.2863 41 1 11.3179 -6.7564 1.0690 42 1 10.2724 -2.1253 0.5951 43 1 11.8237 -2.5307 -0.1908 44 1 10.8330 0.2767 -0.2514 45 1 4.1356 -1.3460 -3.1575 46 1 1.8251 -0.1197 -2.1342 47 1 1.5507 -1.6913 -1.3422 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083566793.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:58 Heat of formation + Delta-G solvation = 1.320884 kcal Electronic energy + Delta-G solvation = -29505.688278 eV Core-core repulsion = 25497.010484 eV Total energy + Delta-G solvation = -4008.677794 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.47590 -39.47378 -38.00940 -37.32412 -35.23899 -33.80005 -33.42658 -32.04434 -31.64085 -29.10625 -28.59533 -27.69267 -26.79791 -24.39292 -23.89668 -22.85405 -21.78603 -20.79473 -20.19012 -19.58074 -19.28130 -17.84259 -17.35820 -16.99346 -16.31435 -16.17538 -15.75808 -15.14559 -15.00283 -14.85553 -14.39211 -14.23126 -14.15562 -13.95923 -13.73507 -13.43299 -13.38198 -13.01175 -12.85596 -12.66754 -12.48392 -12.23070 -11.93825 -11.75622 -11.56527 -11.33912 -11.23833 -11.22293 -11.08907 -10.68870 -10.36700 -10.20329 -9.90885 -9.77557 -9.69151 -9.40395 -9.14342 -8.65938 -8.43045 -8.31257 -7.03888 -6.32827 -3.13600 1.67061 2.45489 2.46854 3.44102 3.59966 3.62432 3.75701 3.83555 3.88459 4.05176 4.14817 4.21861 4.39192 4.66577 4.66859 4.74104 4.84851 4.94066 4.95686 4.97311 5.03540 5.14988 5.18139 5.25255 5.32014 5.38572 5.43328 5.45557 5.47283 5.57722 5.58160 5.68784 5.76203 5.92978 6.03195 6.06892 6.34719 6.47582 6.50534 6.58254 6.61775 6.93030 7.03785 7.70869 7.79659 7.87528 8.15011 8.37739 8.69278 9.05338 9.60720 10.26857 11.16439 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013975 B = 0.003347 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.038999 B = 8364.754841 C = 9272.714914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.107 4.107 3 H 0.084 0.916 4 C -0.121 4.121 5 C -0.034 4.034 6 C 0.207 3.793 7 N -0.450 5.450 8 C -0.054 4.054 9 C 0.604 3.396 10 O -0.560 6.560 11 N -0.679 5.679 12 C 0.139 3.861 13 H 0.100 0.900 14 C 0.123 3.877 15 N -0.602 5.602 16 C -0.328 4.328 17 H 0.079 0.921 18 C -0.014 4.014 19 N -0.914 5.914 20 Si 1.052 2.948 21 H -0.296 1.296 22 H -0.300 1.300 23 H -0.288 1.288 24 C 0.087 3.913 25 C 0.083 3.917 26 H 0.079 0.921 27 O -0.557 6.557 28 C 0.031 3.969 29 N -0.456 5.456 30 C 0.107 3.893 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.414 0.586 39 H 0.040 0.960 40 H 0.055 0.945 41 H 0.264 0.736 42 H 0.038 0.962 43 H 0.043 0.957 44 H 0.377 0.623 45 H 0.187 0.813 46 H 0.092 0.908 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.260 15.995 -3.637 26.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.125 4.125 3 H 0.103 0.897 4 C -0.159 4.159 5 C -0.073 4.073 6 C -0.056 4.056 7 N -0.169 5.169 8 C -0.183 4.183 9 C 0.390 3.610 10 O -0.439 6.439 11 N -0.328 5.328 12 C 0.032 3.968 13 H 0.118 0.882 14 C -0.004 4.004 15 N -0.331 5.331 16 C -0.454 4.454 17 H 0.097 0.903 18 C -0.215 4.215 19 N -0.554 5.554 20 Si 0.885 3.115 21 H -0.225 1.225 22 H -0.228 1.228 23 H -0.216 1.216 24 C -0.038 4.038 25 C 0.023 3.977 26 H 0.097 0.903 27 O -0.361 6.361 28 C -0.108 4.108 29 N -0.139 5.139 30 C -0.015 4.015 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.118 0.882 38 H 0.250 0.750 39 H 0.057 0.943 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.055 0.945 43 H 0.061 0.939 44 H 0.224 0.776 45 H 0.204 0.796 46 H 0.110 0.890 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -20.097 16.189 -2.668 25.944 hybrid contribution -0.241 -0.487 -1.451 1.550 sum -20.338 15.702 -4.120 26.023 Atomic orbital electron populations 1.21765 0.93127 1.02633 1.02699 1.21481 0.96986 1.00388 0.93682 0.89747 1.21780 0.94751 1.01488 0.97914 1.20240 0.93602 1.03584 0.89867 1.23508 0.87134 1.05520 0.89463 1.70450 1.15563 1.16548 1.14377 1.20635 0.93894 1.13379 0.90394 1.16826 0.82122 0.76345 0.85674 1.90742 1.86686 1.52408 1.14057 1.45323 1.05404 1.69226 1.12853 1.22288 0.81943 0.96292 0.96276 0.88226 1.22141 0.97128 0.92006 0.89122 1.44668 1.65847 1.06391 1.16182 1.20017 1.45798 0.83984 0.95650 0.90345 1.25752 0.97579 1.03128 0.95035 1.70893 1.38240 1.06826 1.39395 0.84009 0.76324 0.75181 0.75947 1.22463 1.22763 1.21572 1.22376 0.98017 0.87468 0.95955 1.23199 0.96574 0.83522 0.94440 0.90321 1.86501 1.45898 1.36362 1.67357 1.22362 0.88879 1.04395 0.95130 1.45297 1.08382 1.52169 1.08036 1.22140 0.76974 1.02207 1.00220 0.92039 0.91493 0.92106 0.89739 0.90940 0.89089 0.88210 0.74975 0.94263 0.92703 0.92616 0.94518 0.93877 0.77577 0.79575 0.88998 0.89426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.48 9.17 37.15 0.34 -0.14 16 2 C -0.11 -0.55 2.73 -90.43 -0.25 -0.80 16 3 H 0.08 0.46 8.11 -51.93 -0.42 0.04 16 4 C -0.12 -0.72 5.25 -26.46 -0.14 -0.86 16 5 C -0.03 -0.30 6.33 -27.48 -0.17 -0.48 16 6 C 0.21 2.73 7.64 -154.64 -1.18 1.55 16 7 N -0.45 -7.78 11.00 -7.01 -0.08 -7.86 16 8 C -0.05 -0.94 6.98 -82.98 -0.58 -1.52 16 9 C 0.60 11.95 7.81 -12.56 -0.10 11.86 16 10 O -0.56 -11.78 16.52 5.26 0.09 -11.70 16 11 N -0.68 -13.65 4.81 -52.71 -0.25 -13.90 16 12 C 0.14 2.67 3.31 -65.66 -0.22 2.45 16 13 H 0.10 1.82 7.54 -51.92 -0.39 1.43 16 14 C 0.12 2.69 6.95 -2.41 -0.02 2.67 16 15 N -0.60 -15.22 3.28 -169.94 -0.56 -15.77 16 16 C -0.33 -9.64 10.41 -15.06 -0.16 -9.79 16 17 H 0.08 2.44 8.06 -52.48 -0.42 2.02 16 18 C -0.01 -0.42 5.41 -17.43 -0.09 -0.52 16 19 N -0.91 -29.00 13.70 55.49 0.76 -28.24 16 20 Si 1.05 27.27 24.74 -169.99 -4.21 23.07 16 21 H -0.30 -7.12 6.74 56.52 0.38 -6.74 16 22 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 23 H -0.29 -7.32 6.87 56.52 0.39 -6.93 16 24 C 0.09 1.93 4.75 -3.07 -0.01 1.91 16 25 C 0.08 1.47 4.12 -24.89 -0.10 1.37 16 26 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 27 O -0.56 -9.00 12.67 -35.23 -0.45 -9.44 16 28 C 0.03 0.43 11.32 -16.82 -0.19 0.24 16 29 N -0.46 -5.15 3.11 -113.42 -0.35 -5.51 16 30 C 0.11 0.70 6.25 -3.87 -0.02 0.68 16 31 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.08 0.35 8.12 -51.93 -0.42 -0.07 16 35 H 0.07 0.47 8.12 -51.93 -0.42 0.04 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.41 8.76 8.10 -40.82 -0.33 8.43 16 39 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.26 8.28 8.73 -40.82 -0.36 7.92 16 42 H 0.04 0.87 3.62 -51.93 -0.19 0.68 16 43 H 0.04 0.97 8.01 -51.93 -0.42 0.55 16 44 H 0.38 4.43 9.11 45.56 0.42 4.85 16 45 H 0.19 2.13 8.06 -52.48 -0.42 1.70 16 46 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.09 0.50 8.13 -51.93 -0.42 0.08 16 LS Contribution 375.97 15.07 5.67 5.67 Total: -1.00 -37.70 375.97 -8.71 -46.41 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -6.43 Total: 8.65 kcal Atomic # 6 Polarization: 11.52 SS G_CDS: -2.89 Total: 8.62 kcal Atomic # 7 Polarization: -70.80 SS G_CDS: -0.48 Total: -71.28 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.36 Total: -21.14 kcal Atomic # 14 Polarization: 27.27 SS G_CDS: -4.21 Total: 23.07 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.70 -8.71 -46.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083566793.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.732 kcal (2) G-P(sol) polarization free energy of solvation -37.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds