Wall clock time and date at job start Tue Mar 31 2020 19:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.45576 * 2 1 4 4 C 1.53141 * 109.46421 * 119.96915 * 2 1 3 5 5 C 1.53389 * 109.25221 * 189.82576 * 4 2 1 6 6 C 1.51104 * 108.19416 * 311.05684 * 5 4 2 7 7 N 1.29788 * 127.17053 * 196.27906 * 6 5 4 8 8 C 1.35894 * 108.84770 * 180.02562 * 7 6 5 9 9 C 1.47323 * 126.21274 * 179.87888 * 8 7 6 10 10 O 1.21621 * 120.00074 * 179.68108 * 9 8 7 11 11 N 1.34780 * 119.99856 * 359.68834 * 9 8 7 12 12 C 1.46500 * 120.00172 * 180.02562 * 11 9 8 13 13 H 1.09007 * 110.91156 * 31.09455 * 12 11 9 14 14 C 1.55127 * 111.19109 * 267.18369 * 12 11 9 15 15 N 1.47418 * 104.72049 * 279.18830 * 14 12 11 16 16 C 1.36939 * 125.64946 * 155.81793 * 15 14 12 17 17 H 1.08004 * 119.99325 * 9.51727 * 16 15 14 18 18 C 1.38809 * 120.00199 * 189.51086 * 16 15 14 19 19 N 1.31623 * 119.99774 * 208.93706 * 18 16 15 20 20 Si 1.86800 * 119.99975 * 28.94163 * 18 16 15 21 21 H 1.48494 * 109.47052 * 275.29749 * 20 18 16 22 22 H 1.48497 * 109.47095 * 155.29577 * 20 18 16 23 23 H 1.48506 * 109.46908 * 35.29899 * 20 18 16 24 24 C 1.47018 * 108.70509 * 335.55383 * 15 14 12 25 25 C 1.54323 * 107.27391 * 1.28535 * 24 15 14 26 26 H 1.08992 * 110.72354 * 263.65910 * 25 24 15 27 27 O 1.42897 * 110.72146 * 140.55188 * 25 24 15 28 28 C 1.36567 * 107.57764 * 359.60771 * 8 7 6 29 29 N 1.34873 * 106.78965 * 0.28563 * 28 8 7 30 30 C 1.46580 * 127.50544 * 179.86061 * 29 28 8 31 31 H 1.09006 * 109.46950 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47606 * 299.97546 * 1 2 3 33 33 H 1.08997 * 109.47111 * 59.97693 * 1 2 3 34 34 H 1.09000 * 109.50414 * 309.76224 * 4 2 1 35 35 H 1.09000 * 109.50805 * 69.88905 * 4 2 1 36 36 H 1.08999 * 109.71432 * 70.73346 * 5 4 2 37 37 H 1.09001 * 109.71700 * 191.33262 * 5 4 2 38 38 H 0.97000 * 119.99767 * 359.97438 * 11 9 8 39 39 H 1.09002 * 110.49644 * 160.34511 * 14 12 11 40 40 H 1.09000 * 110.34346 * 37.95531 * 14 12 11 41 41 H 0.96999 * 120.00059 * 4.82165 * 19 18 16 42 42 H 1.09002 * 109.88762 * 120.70676 * 24 15 14 43 43 H 1.09000 * 109.88266 * 241.87111 * 24 15 14 44 44 H 0.96698 * 113.99483 * 61.46274 * 27 25 24 45 45 H 1.08007 * 126.60824 * 180.27658 * 28 8 7 46 46 H 1.08997 * 109.58295 * 316.99959 * 30 29 28 47 47 H 1.09001 * 109.58200 * 77.27678 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0402 -0.7213 1.2508 5 6 3.5541 -0.5079 1.3755 6 6 4.1861 -0.8193 0.0388 7 7 5.4414 -1.0451 -0.2015 8 6 5.5980 -1.2839 -1.5301 9 6 6.8667 -1.5816 -2.2173 10 8 6.8758 -1.7837 -3.4166 11 7 8.0172 -1.6300 -1.5169 12 6 9.2789 -1.9255 -2.2003 13 1 9.2619 -1.5557 -3.2256 14 6 9.5937 -3.4441 -2.1646 15 7 10.1737 -3.6751 -0.8291 16 6 10.1796 -4.8681 -0.1570 17 1 9.8736 -5.7732 -0.6608 18 6 10.5788 -4.9144 1.1717 19 7 11.1280 -6.0080 1.6561 20 14 10.3364 -3.4245 2.2721 21 1 11.4800 -2.4926 2.1025 22 1 10.2608 -3.8627 3.6889 23 1 9.0756 -2.7339 1.8996 24 6 10.7505 -2.4139 -0.3410 25 6 10.4851 -1.3413 -1.4183 26 1 11.3513 -1.2265 -2.0698 27 8 10.1395 -0.0931 -0.8147 28 6 4.3649 -1.2038 -2.1117 29 7 3.4887 -0.9127 -1.1286 30 6 2.0406 -0.7218 -1.2516 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5134 0.8901 33 1 -0.3633 0.5142 -0.8898 34 1 1.5419 -0.3179 2.1323 35 1 1.8284 -1.7873 1.1682 36 1 3.7583 0.5279 1.6466 37 1 3.9578 -1.1739 2.1381 38 1 8.0099 -1.4685 -0.5605 39 1 10.3138 -3.7029 -2.9409 40 1 8.6787 -4.0237 -2.2863 41 1 11.3179 -6.7564 1.0690 42 1 10.2724 -2.1253 0.5951 43 1 11.8237 -2.5307 -0.1908 44 1 10.8330 0.2767 -0.2514 45 1 4.1356 -1.3460 -3.1575 46 1 1.8251 -0.1197 -2.1342 47 1 1.5507 -1.6913 -1.3422 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083566793.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:57 Heat of formation + Delta-G solvation = -28.768099 kcal Electronic energy + Delta-G solvation = -29506.993035 eV Core-core repulsion = 25497.010484 eV Total energy + Delta-G solvation = -4009.982550 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.46735 -40.99370 -39.42036 -38.07710 -36.79579 -35.36452 -34.48356 -33.88293 -32.54417 -30.63942 -29.77741 -29.32667 -27.52333 -25.91577 -24.92372 -24.09062 -22.63547 -22.48924 -21.58144 -21.06603 -20.04164 -19.68152 -18.80445 -18.39949 -17.46371 -17.22516 -17.07450 -16.70688 -16.07349 -16.01959 -15.56737 -15.48735 -15.42975 -15.17757 -14.93214 -14.71221 -14.60923 -14.21783 -14.10074 -13.97076 -13.51404 -13.33469 -13.13625 -13.07701 -12.97854 -12.58459 -12.45212 -12.03672 -11.94106 -11.82950 -11.79089 -11.70131 -11.43777 -11.35800 -11.08446 -10.94947 -10.73509 -10.59600 -10.16206 -9.50412 -9.13923 -8.71721 -5.44059 0.51837 1.33455 1.35612 1.51475 1.60480 1.70748 2.24441 2.47954 2.50216 2.87107 3.10246 3.14925 3.31925 3.43343 3.56503 3.62891 3.68449 3.71334 3.93556 4.04481 4.11145 4.24719 4.34712 4.36745 4.39898 4.43252 4.46889 4.55591 4.68938 4.70182 4.79155 4.80538 4.88504 4.91817 4.92333 4.98868 5.09503 5.13442 5.29042 5.40997 5.42460 5.46571 5.54404 6.03282 6.06678 6.47979 6.76797 6.80719 6.86164 7.20700 7.40403 8.06486 8.79258 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013975 B = 0.003347 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.038999 B = 8364.754841 C = 9272.714914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.101 4.101 3 H 0.084 0.916 4 C -0.116 4.116 5 C -0.036 4.036 6 C 0.208 3.792 7 N -0.497 5.497 8 C -0.102 4.102 9 C 0.599 3.401 10 O -0.582 6.582 11 N -0.685 5.685 12 C 0.141 3.859 13 H 0.115 0.885 14 C 0.122 3.878 15 N -0.620 5.620 16 C -0.322 4.322 17 H 0.043 0.957 18 C -0.066 4.066 19 N -0.946 5.946 20 Si 1.100 2.900 21 H -0.262 1.262 22 H -0.306 1.306 23 H -0.285 1.285 24 C 0.080 3.920 25 C 0.105 3.895 26 H 0.116 0.884 27 O -0.560 6.560 28 C 0.048 3.952 29 N -0.447 5.447 30 C 0.096 3.904 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.108 0.892 35 H 0.067 0.933 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.408 0.592 39 H 0.056 0.944 40 H 0.028 0.972 41 H 0.251 0.749 42 H 0.029 0.971 43 H 0.045 0.955 44 H 0.399 0.601 45 H 0.208 0.792 46 H 0.113 0.887 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.233 19.153 -3.664 29.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.119 4.119 3 H 0.103 0.897 4 C -0.154 4.154 5 C -0.075 4.075 6 C -0.057 4.057 7 N -0.217 5.217 8 C -0.230 4.230 9 C 0.387 3.613 10 O -0.463 6.463 11 N -0.332 5.332 12 C 0.035 3.965 13 H 0.132 0.868 14 C -0.004 4.004 15 N -0.349 5.349 16 C -0.450 4.450 17 H 0.061 0.939 18 C -0.262 4.262 19 N -0.589 5.589 20 Si 0.928 3.072 21 H -0.187 1.187 22 H -0.235 1.235 23 H -0.213 1.213 24 C -0.045 4.045 25 C 0.045 3.955 26 H 0.133 0.867 27 O -0.368 6.368 28 C -0.093 4.093 29 N -0.128 5.128 30 C -0.024 4.024 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.126 0.874 35 H 0.086 0.914 36 H 0.123 0.877 37 H 0.111 0.889 38 H 0.243 0.757 39 H 0.074 0.926 40 H 0.046 0.954 41 H 0.060 0.940 42 H 0.046 0.954 43 H 0.063 0.937 44 H 0.250 0.750 45 H 0.225 0.775 46 H 0.131 0.869 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -22.081 19.392 -2.717 29.512 hybrid contribution 0.245 -1.513 -1.506 2.148 sum -21.835 17.879 -4.222 28.535 Atomic orbital electron populations 1.21731 0.91300 1.03089 1.03546 1.21475 0.98252 0.99882 0.92327 0.89744 1.21794 0.92490 1.01563 0.99507 1.20471 0.95461 1.04123 0.87447 1.24242 0.86484 1.03666 0.91286 1.70353 1.18147 1.18608 1.14568 1.20545 0.94148 1.17057 0.91259 1.17228 0.82855 0.75578 0.85594 1.90700 1.87168 1.53623 1.14856 1.45393 1.05916 1.69436 1.12503 1.22270 0.82600 0.94187 0.97473 0.86758 1.22229 0.96182 0.94074 0.87932 1.44680 1.66668 1.06363 1.17140 1.19873 1.44410 0.84824 0.95922 0.93863 1.26932 0.97529 1.05075 0.96618 1.70987 1.41053 1.07499 1.39347 0.83350 0.77490 0.72806 0.73578 1.18747 1.23469 1.21266 1.22576 0.97519 0.87190 0.97190 1.23017 0.96628 0.82786 0.93103 0.86682 1.86477 1.47362 1.35058 1.67881 1.22651 0.88186 1.02193 0.96268 1.45588 1.09991 1.50376 1.06815 1.22620 0.73974 1.03697 1.02114 0.91775 0.90683 0.91298 0.87359 0.91406 0.87745 0.88910 0.75731 0.92591 0.95376 0.93995 0.95385 0.93735 0.74995 0.77507 0.86856 0.88103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.41 9.17 71.98 0.66 0.25 16 2 C -0.10 -0.71 2.73 -10.67 -0.03 -0.74 16 3 H 0.08 0.65 8.11 -2.38 -0.02 0.63 16 4 C -0.12 -1.05 5.25 30.77 0.16 -0.89 16 5 C -0.04 -0.59 6.33 30.11 0.19 -0.40 16 6 C 0.21 5.30 7.64 138.05 1.05 6.36 16 7 N -0.50 -17.32 11.00 -176.08 -1.94 -19.25 16 8 C -0.10 -3.62 6.98 40.52 0.28 -3.34 16 9 C 0.60 24.06 7.81 86.63 0.68 24.73 16 10 O -0.58 -24.75 16.52 -4.10 -0.07 -24.81 16 11 N -0.69 -27.58 4.81 -438.93 -2.11 -29.69 16 12 C 0.14 5.30 3.31 46.46 0.15 5.45 16 13 H 0.11 4.00 7.54 -2.38 -0.02 3.98 16 14 C 0.12 5.37 6.95 86.93 0.60 5.98 16 15 N -0.62 -31.54 3.28 -691.57 -2.27 -33.81 16 16 C -0.32 -19.56 10.41 84.03 0.87 -18.69 16 17 H 0.04 2.86 8.06 -2.91 -0.02 2.83 16 18 C -0.07 -4.08 5.41 84.86 0.46 -3.62 16 19 N -0.95 -61.95 13.70 21.65 0.30 -61.66 16 20 Si 1.10 55.65 24.74 68.60 1.70 57.34 16 21 H -0.26 -11.67 6.74 99.48 0.67 -11.00 16 22 H -0.31 -15.71 7.11 99.48 0.71 -15.00 16 23 H -0.29 -14.16 6.87 99.48 0.68 -13.48 16 24 C 0.08 3.40 4.75 86.73 0.41 3.82 16 25 C 0.10 3.44 4.12 31.78 0.13 3.57 16 26 H 0.12 3.03 8.14 -2.39 -0.02 3.01 16 27 O -0.56 -16.37 12.67 -148.98 -1.89 -18.26 16 28 C 0.05 1.29 11.32 83.84 0.95 2.24 16 29 N -0.45 -9.34 3.11 -512.75 -1.60 -10.93 16 30 C 0.10 0.97 6.25 86.44 0.54 1.51 16 31 H 0.06 0.18 8.14 -2.38 -0.02 0.16 16 32 H 0.07 0.15 8.14 -2.39 -0.02 0.13 16 33 H 0.07 0.12 8.14 -2.39 -0.02 0.11 16 34 H 0.11 0.51 8.12 -2.39 -0.02 0.49 16 35 H 0.07 0.71 8.12 -2.39 -0.02 0.69 16 36 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.41 17.36 8.10 -92.71 -0.75 16.61 16 39 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.25 16.51 8.73 -92.71 -0.81 15.70 16 42 H 0.03 1.28 3.62 -2.39 -0.01 1.27 16 43 H 0.04 1.89 8.01 -2.39 -0.02 1.87 16 44 H 0.40 7.84 9.11 -74.06 -0.67 7.16 16 45 H 0.21 4.42 8.06 -2.91 -0.02 4.39 16 46 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.10 0.83 8.13 -2.39 -0.02 0.81 16 Total: -1.00 -85.88 375.97 -1.28 -87.15 By element: Atomic # 1 Polarization: 28.20 SS G_CDS: -0.52 Total: 27.68 kcal Atomic # 6 Polarization: 19.12 SS G_CDS: 7.12 Total: 26.24 kcal Atomic # 7 Polarization: -147.72 SS G_CDS: -7.62 Total: -155.34 kcal Atomic # 8 Polarization: -41.12 SS G_CDS: -1.96 Total: -43.07 kcal Atomic # 14 Polarization: 55.65 SS G_CDS: 1.70 Total: 57.34 kcal Total: -85.88 -1.28 -87.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083566793.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.385 kcal (2) G-P(sol) polarization free energy of solvation -85.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds