Wall clock time and date at job start Tue Mar 31 2020 19:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.45340 * 2 1 4 4 C 1.53138 * 109.46083 * 240.02459 * 2 1 3 5 5 C 1.53393 * 109.24407 * 170.17873 * 4 2 1 6 6 C 1.51098 * 108.19697 * 48.94608 * 5 4 2 7 7 N 1.29800 * 127.17866 * 164.30300 * 6 5 4 8 8 C 1.35882 * 108.85330 * 180.25151 * 7 6 5 9 9 C 1.47328 * 126.21288 * 179.86266 * 8 7 6 10 10 O 1.21621 * 120.00170 * 179.69278 * 9 8 7 11 11 N 1.34776 * 119.99791 * 359.68904 * 9 8 7 12 12 C 1.46499 * 119.99846 * 180.02562 * 11 9 8 13 13 H 1.08989 * 110.88832 * 31.11459 * 12 11 9 14 14 C 1.55138 * 111.22164 * 267.20331 * 12 11 9 15 15 N 1.47421 * 104.72210 * 279.17784 * 14 12 11 16 16 C 1.36942 * 125.64804 * 155.81545 * 15 14 12 17 17 H 1.08001 * 119.99608 * 5.54425 * 16 15 14 18 18 C 1.38811 * 119.99859 * 185.53373 * 16 15 14 19 19 N 1.31619 * 119.99898 * 7.32562 * 18 16 15 20 20 Si 1.86798 * 119.99526 * 187.31977 * 18 16 15 21 21 H 1.48502 * 109.47424 * 265.01587 * 20 18 16 22 22 H 1.48507 * 109.46922 * 145.01666 * 20 18 16 23 23 H 1.48500 * 109.47468 * 25.02234 * 20 18 16 24 24 C 1.47023 * 108.70689 * 335.55346 * 15 14 12 25 25 C 1.54327 * 107.26634 * 1.28873 * 24 15 14 26 26 H 1.09006 * 110.71830 * 263.64884 * 25 24 15 27 27 O 1.42905 * 110.71936 * 140.55788 * 25 24 15 28 28 C 1.36572 * 107.57846 * 359.59893 * 8 7 6 29 29 N 1.34869 * 106.78798 * 0.19063 * 28 8 7 30 30 C 1.46574 * 127.50677 * 180.13556 * 29 28 8 31 31 H 1.08994 * 109.47218 * 300.03217 * 1 2 3 32 32 H 1.08998 * 109.46895 * 60.03142 * 1 2 3 33 33 H 1.09004 * 109.47519 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.51070 * 290.10767 * 4 2 1 35 35 H 1.08999 * 109.50910 * 50.24831 * 4 2 1 36 36 H 1.09004 * 109.71530 * 168.62181 * 5 4 2 37 37 H 1.08997 * 109.71864 * 289.22045 * 5 4 2 38 38 H 0.96997 * 119.99615 * 0.02562 * 11 9 8 39 39 H 1.08997 * 110.49600 * 160.33579 * 14 12 11 40 40 H 1.09001 * 110.34040 * 37.94372 * 14 12 11 41 41 H 0.97007 * 119.99060 * 179.97438 * 19 18 16 42 42 H 1.08995 * 109.88572 * 120.69928 * 24 15 14 43 43 H 1.08994 * 109.88288 * 241.86905 * 24 15 14 44 44 H 0.96700 * 114.00118 * 61.45125 * 27 25 24 45 45 H 1.08004 * 126.60937 * 180.16569 * 28 8 7 46 46 H 1.08998 * 109.58209 * 282.58362 * 30 29 28 47 47 H 1.09005 * 109.58166 * 42.85712 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0402 -0.7214 -1.2508 5 6 3.5541 -0.5081 -1.3753 6 6 4.1860 -0.8194 -0.0386 7 7 5.4429 -1.0350 0.2037 8 6 5.5979 -1.2841 1.5305 9 6 6.8667 -1.5806 2.2180 10 8 6.8760 -1.7815 3.4174 11 7 8.0172 -1.6293 1.5176 12 6 9.2788 -1.9247 2.2012 13 1 9.1137 -2.5821 3.0547 14 6 9.9998 -0.6220 2.6371 15 7 10.6820 -0.1461 1.4199 16 6 11.0461 1.1489 1.1637 17 1 10.9171 1.9063 1.9227 18 6 11.5811 1.4880 -0.0715 19 7 11.6056 0.6012 -1.0439 20 14 12.2660 3.2028 -0.3536 21 1 11.2197 4.0589 -0.9683 22 1 13.4381 3.1244 -1.2621 23 1 12.6848 3.7885 0.9452 24 6 10.9123 -1.2931 0.5294 25 6 10.3131 -2.5365 1.2197 26 1 11.0835 -3.0863 1.7604 27 8 9.6665 -3.3818 0.2660 28 6 4.3648 -1.2037 2.1120 29 7 3.4886 -0.9127 1.1289 30 6 2.0405 -0.7217 1.2517 31 1 -0.3633 0.5143 0.8896 32 1 -0.3633 0.5133 -0.8903 33 1 -0.3634 -1.0277 0.0005 34 1 1.8284 -1.7874 -1.1680 35 1 1.5420 -0.3180 -2.1323 36 1 3.9580 -1.1747 -2.1373 37 1 3.7584 0.5275 -1.6472 38 1 8.0098 -1.4687 0.5611 39 1 10.7266 -0.8323 3.4217 40 1 9.2744 0.1164 2.9787 41 1 11.9791 0.8384 -1.9071 42 1 10.4171 -1.1253 -0.4269 43 1 11.9821 -1.4339 0.3756 44 1 10.2571 -3.7282 -0.4168 45 1 4.1353 -1.3463 3.1578 46 1 1.5504 -1.6913 1.3399 47 1 1.8249 -0.1215 2.1357 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083566794.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:01 Heat of formation + Delta-G solvation = -4.065060 kcal Electronic energy + Delta-G solvation = -29318.249278 eV Core-core repulsion = 25309.337931 eV Total energy + Delta-G solvation = -4008.911346 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.39496 -39.23700 -37.77567 -37.18209 -34.92603 -33.68748 -33.30310 -31.91281 -31.34800 -28.90801 -28.33911 -27.20355 -26.58211 -24.47747 -24.11410 -22.83774 -21.72311 -20.37249 -19.98818 -19.48787 -19.19925 -17.67373 -16.85911 -16.56638 -16.21009 -15.98452 -15.50710 -15.08822 -14.85007 -14.61329 -14.21187 -14.13644 -13.95550 -13.80584 -13.71742 -13.37766 -13.01394 -12.87777 -12.59354 -12.50339 -12.28426 -11.89412 -11.79625 -11.51372 -11.32640 -11.28914 -11.18433 -11.15302 -10.80376 -10.61610 -10.12345 -10.09600 -10.02615 -9.76207 -9.69380 -9.52381 -9.17186 -8.65740 -8.46779 -8.19507 -6.78323 -5.66922 -3.02514 1.75668 2.52949 2.56470 3.42946 3.48293 3.50437 3.78206 3.93842 3.95557 4.10922 4.21810 4.28271 4.51621 4.71784 4.74449 4.80181 4.90039 4.98427 5.01074 5.08083 5.22012 5.32759 5.37862 5.44558 5.50827 5.52208 5.52757 5.61773 5.63173 5.75019 5.78730 5.81416 5.93228 6.10886 6.24927 6.37664 6.56143 6.63218 6.71278 7.01452 7.20845 7.33594 7.61372 7.79658 7.89964 8.22166 8.27401 8.32692 8.84678 9.23009 9.84201 10.48835 11.42692 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012527 B = 0.003137 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.717308 B = 8924.191969 C =10004.146001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.108 4.108 3 H 0.085 0.915 4 C -0.120 4.120 5 C -0.034 4.034 6 C 0.206 3.794 7 N -0.447 5.447 8 C -0.051 4.051 9 C 0.601 3.399 10 O -0.564 6.564 11 N -0.673 5.673 12 C 0.141 3.859 13 H 0.093 0.907 14 C 0.123 3.877 15 N -0.598 5.598 16 C -0.224 4.224 17 H 0.078 0.922 18 C -0.008 4.008 19 N -0.920 5.920 20 Si 0.911 3.089 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.143 3.857 25 C 0.065 3.935 26 H 0.065 0.935 27 O -0.560 6.560 28 C 0.028 3.972 29 N -0.457 5.457 30 C 0.107 3.893 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.416 0.584 39 H 0.033 0.967 40 H 0.049 0.951 41 H 0.251 0.749 42 H 0.075 0.925 43 H 0.032 0.968 44 H 0.376 0.624 45 H 0.186 0.814 46 H 0.086 0.914 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.048 -5.459 0.163 22.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.127 4.127 3 H 0.103 0.897 4 C -0.158 4.158 5 C -0.073 4.073 6 C -0.058 4.058 7 N -0.166 5.166 8 C -0.180 4.180 9 C 0.387 3.613 10 O -0.444 6.444 11 N -0.322 5.322 12 C 0.034 3.966 13 H 0.111 0.889 14 C -0.004 4.004 15 N -0.325 5.325 16 C -0.353 4.353 17 H 0.096 0.904 18 C -0.205 4.205 19 N -0.568 5.568 20 Si 0.742 3.258 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.018 3.982 25 C 0.005 3.995 26 H 0.083 0.917 27 O -0.364 6.364 28 C -0.111 4.111 29 N -0.140 5.140 30 C -0.015 4.015 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.117 0.883 37 H 0.110 0.890 38 H 0.253 0.747 39 H 0.050 0.950 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.093 0.907 43 H 0.050 0.950 44 H 0.222 0.778 45 H 0.203 0.797 46 H 0.104 0.896 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -21.906 -5.328 0.648 22.554 hybrid contribution 0.380 0.911 -0.290 1.029 sum -21.526 -4.417 0.358 21.977 Atomic orbital electron populations 1.21763 0.93179 1.02518 1.02717 1.21487 0.96930 1.00541 0.93695 0.89672 1.21770 0.94838 1.01292 0.97910 1.20229 0.93466 1.03718 0.89844 1.23508 0.87107 1.05727 0.89436 1.70465 1.15266 1.16401 1.14507 1.20680 0.93891 1.12998 0.90463 1.16844 0.82158 0.76590 0.85694 1.90732 1.86922 1.52719 1.14001 1.45311 1.05159 1.68757 1.12936 1.22212 0.82836 0.96914 0.94607 0.88948 1.22080 0.94207 0.93393 0.90754 1.44301 1.68097 1.04115 1.16033 1.19053 1.34674 0.83819 0.97711 0.90444 1.24785 1.01980 0.98022 0.95669 1.69928 1.50734 1.33288 1.02816 0.86104 0.78363 0.83767 0.77554 1.21706 1.21707 1.20701 1.21947 0.98256 0.83441 0.94587 1.23507 0.93607 0.92149 0.90245 0.91712 1.86450 1.39888 1.67274 1.42833 1.22355 0.88991 1.04660 0.95051 1.45287 1.08332 1.52314 1.08033 1.22118 0.77069 1.02064 1.00216 0.92105 0.91517 0.92118 0.91068 0.89806 0.88334 0.89011 0.74731 0.94974 0.93246 0.93843 0.90686 0.95009 0.77767 0.79654 0.89563 0.89018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.52 9.17 37.16 0.34 -0.18 16 2 C -0.11 -0.61 2.73 -90.43 -0.25 -0.86 16 3 H 0.08 0.55 8.11 -51.93 -0.42 0.13 16 4 C -0.12 -0.73 5.25 -26.46 -0.14 -0.87 16 5 C -0.03 -0.31 6.33 -27.48 -0.17 -0.49 16 6 C 0.21 2.80 7.64 -154.63 -1.18 1.62 16 7 N -0.45 -7.95 11.00 -7.01 -0.08 -8.03 16 8 C -0.05 -0.92 6.98 -82.98 -0.58 -1.50 16 9 C 0.60 12.33 7.81 -12.56 -0.10 12.23 16 10 O -0.56 -12.31 16.52 5.26 0.09 -12.22 16 11 N -0.67 -14.10 4.81 -52.72 -0.25 -14.36 16 12 C 0.14 2.89 3.31 -65.66 -0.22 2.67 16 13 H 0.09 1.82 7.54 -51.94 -0.39 1.43 16 14 C 0.12 2.77 6.95 -2.41 -0.02 2.76 16 15 N -0.60 -15.61 3.39 -169.93 -0.58 -16.19 16 16 C -0.22 -6.40 10.26 -15.06 -0.15 -6.56 16 17 H 0.08 2.16 7.84 -52.49 -0.41 1.75 16 18 C -0.01 -0.24 5.45 -17.43 -0.09 -0.34 16 19 N -0.92 -27.01 10.46 55.49 0.58 -26.43 16 20 Si 0.91 22.52 29.56 -169.99 -5.02 17.49 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 C 0.14 3.45 5.21 -3.06 -0.02 3.43 16 25 C 0.07 1.27 4.12 -24.90 -0.10 1.17 16 26 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 27 O -0.56 -10.12 12.67 -35.23 -0.45 -10.57 16 28 C 0.03 0.40 11.32 -16.82 -0.19 0.21 16 29 N -0.46 -5.35 3.11 -113.42 -0.35 -5.71 16 30 C 0.11 0.75 6.25 -3.88 -0.02 0.72 16 31 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 34 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 35 H 0.08 0.37 8.12 -51.93 -0.42 -0.05 16 36 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.42 9.22 8.10 -40.82 -0.33 8.89 16 39 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 42 H 0.08 2.03 6.80 -51.93 -0.35 1.68 16 43 H 0.03 0.82 7.98 -51.93 -0.41 0.41 16 44 H 0.38 5.28 9.11 45.56 0.42 5.70 16 45 H 0.19 2.21 8.06 -52.48 -0.42 1.79 16 46 H 0.09 0.49 8.12 -51.93 -0.42 0.06 16 47 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 381.11 15.07 5.74 5.74 Total: -1.00 -35.78 381.11 -9.75 -45.53 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -6.53 Total: 10.71 kcal Atomic # 6 Polarization: 16.92 SS G_CDS: -2.89 Total: 14.03 kcal Atomic # 7 Polarization: -70.03 SS G_CDS: -0.68 Total: -70.71 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.36 Total: -22.79 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.78 -9.75 -45.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083566794.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.461 kcal (2) G-P(sol) polarization free energy of solvation -35.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds