Wall clock time and date at job start Tue Mar 31 2020 19:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.45340 * 2 1 4 4 C 1.53138 * 109.46083 * 240.02459 * 2 1 3 5 5 C 1.53393 * 109.24407 * 170.17873 * 4 2 1 6 6 C 1.51098 * 108.19697 * 48.94608 * 5 4 2 7 7 N 1.29800 * 127.17866 * 164.30300 * 6 5 4 8 8 C 1.35882 * 108.85330 * 180.25151 * 7 6 5 9 9 C 1.47328 * 126.21288 * 179.86266 * 8 7 6 10 10 O 1.21621 * 120.00170 * 179.69278 * 9 8 7 11 11 N 1.34776 * 119.99791 * 359.68904 * 9 8 7 12 12 C 1.46499 * 119.99846 * 180.02562 * 11 9 8 13 13 H 1.08989 * 110.88832 * 31.11459 * 12 11 9 14 14 C 1.55138 * 111.22164 * 267.20331 * 12 11 9 15 15 N 1.47421 * 104.72210 * 279.17784 * 14 12 11 16 16 C 1.36942 * 125.64804 * 155.81545 * 15 14 12 17 17 H 1.08001 * 119.99608 * 5.54425 * 16 15 14 18 18 C 1.38811 * 119.99859 * 185.53373 * 16 15 14 19 19 N 1.31619 * 119.99898 * 7.32562 * 18 16 15 20 20 Si 1.86798 * 119.99526 * 187.31977 * 18 16 15 21 21 H 1.48502 * 109.47424 * 265.01587 * 20 18 16 22 22 H 1.48507 * 109.46922 * 145.01666 * 20 18 16 23 23 H 1.48500 * 109.47468 * 25.02234 * 20 18 16 24 24 C 1.47023 * 108.70689 * 335.55346 * 15 14 12 25 25 C 1.54327 * 107.26634 * 1.28873 * 24 15 14 26 26 H 1.09006 * 110.71830 * 263.64884 * 25 24 15 27 27 O 1.42905 * 110.71936 * 140.55788 * 25 24 15 28 28 C 1.36572 * 107.57846 * 359.59893 * 8 7 6 29 29 N 1.34869 * 106.78798 * 0.19063 * 28 8 7 30 30 C 1.46574 * 127.50677 * 180.13556 * 29 28 8 31 31 H 1.08994 * 109.47218 * 300.03217 * 1 2 3 32 32 H 1.08998 * 109.46895 * 60.03142 * 1 2 3 33 33 H 1.09004 * 109.47519 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.51070 * 290.10767 * 4 2 1 35 35 H 1.08999 * 109.50910 * 50.24831 * 4 2 1 36 36 H 1.09004 * 109.71530 * 168.62181 * 5 4 2 37 37 H 1.08997 * 109.71864 * 289.22045 * 5 4 2 38 38 H 0.96997 * 119.99615 * 0.02562 * 11 9 8 39 39 H 1.08997 * 110.49600 * 160.33579 * 14 12 11 40 40 H 1.09001 * 110.34040 * 37.94372 * 14 12 11 41 41 H 0.97007 * 119.99060 * 179.97438 * 19 18 16 42 42 H 1.08995 * 109.88572 * 120.69928 * 24 15 14 43 43 H 1.08994 * 109.88288 * 241.86905 * 24 15 14 44 44 H 0.96700 * 114.00118 * 61.45125 * 27 25 24 45 45 H 1.08004 * 126.60937 * 180.16569 * 28 8 7 46 46 H 1.08998 * 109.58209 * 282.58362 * 30 29 28 47 47 H 1.09005 * 109.58166 * 42.85712 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0402 -0.7214 -1.2508 5 6 3.5541 -0.5081 -1.3753 6 6 4.1860 -0.8194 -0.0386 7 7 5.4429 -1.0350 0.2037 8 6 5.5979 -1.2841 1.5305 9 6 6.8667 -1.5806 2.2180 10 8 6.8760 -1.7815 3.4174 11 7 8.0172 -1.6293 1.5176 12 6 9.2788 -1.9247 2.2012 13 1 9.1137 -2.5821 3.0547 14 6 9.9998 -0.6220 2.6371 15 7 10.6820 -0.1461 1.4199 16 6 11.0461 1.1489 1.1637 17 1 10.9171 1.9063 1.9227 18 6 11.5811 1.4880 -0.0715 19 7 11.6056 0.6012 -1.0439 20 14 12.2660 3.2028 -0.3536 21 1 11.2197 4.0589 -0.9683 22 1 13.4381 3.1244 -1.2621 23 1 12.6848 3.7885 0.9452 24 6 10.9123 -1.2931 0.5294 25 6 10.3131 -2.5365 1.2197 26 1 11.0835 -3.0863 1.7604 27 8 9.6665 -3.3818 0.2660 28 6 4.3648 -1.2037 2.1120 29 7 3.4886 -0.9127 1.1289 30 6 2.0405 -0.7217 1.2517 31 1 -0.3633 0.5143 0.8896 32 1 -0.3633 0.5133 -0.8903 33 1 -0.3634 -1.0277 0.0005 34 1 1.8284 -1.7874 -1.1680 35 1 1.5420 -0.3180 -2.1323 36 1 3.9580 -1.1747 -2.1373 37 1 3.7584 0.5275 -1.6472 38 1 8.0098 -1.4687 0.5611 39 1 10.7266 -0.8323 3.4217 40 1 9.2744 0.1164 2.9787 41 1 11.9791 0.8384 -1.9071 42 1 10.4171 -1.1253 -0.4269 43 1 11.9821 -1.4339 0.3756 44 1 10.2571 -3.7282 -0.4168 45 1 4.1353 -1.3463 3.1578 46 1 1.5504 -1.6913 1.3399 47 1 1.8249 -0.1215 2.1357 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083566794.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:00 Heat of formation + Delta-G solvation = -30.690764 kcal Electronic energy + Delta-G solvation = -29319.403855 eV Core-core repulsion = 25309.337931 eV Total energy + Delta-G solvation = -4010.065923 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.43677 -40.83878 -39.23502 -38.05290 -36.62126 -35.24954 -34.43569 -33.49652 -32.47418 -30.36907 -29.73748 -28.85688 -27.46742 -26.32822 -24.93216 -24.09239 -22.49067 -22.23494 -21.46258 -21.00741 -20.01588 -19.11882 -18.61523 -18.10345 -17.36809 -17.13326 -17.00504 -16.51920 -16.10760 -15.76547 -15.49533 -15.42317 -15.32799 -14.99066 -14.72122 -14.59385 -14.38559 -14.07239 -14.00069 -13.69934 -13.34881 -13.19580 -13.12571 -13.06647 -12.76831 -12.49002 -12.43271 -12.03392 -12.02269 -11.87512 -11.81114 -11.76915 -11.68707 -11.31001 -11.01561 -10.85289 -10.75513 -10.70369 -10.05602 -9.46220 -8.88317 -7.84254 -5.22687 0.55592 1.37049 1.44773 1.46110 1.55737 1.63579 2.31938 2.47733 2.52826 3.12894 3.20218 3.33403 3.45137 3.58688 3.60090 3.69977 3.84668 3.97516 3.97555 4.08456 4.26614 4.33828 4.37764 4.39570 4.45104 4.56516 4.57654 4.63240 4.71330 4.83444 4.86964 4.92157 4.93595 5.00367 5.11117 5.15097 5.30291 5.32662 5.41805 5.45552 5.49715 5.57402 5.71304 6.06665 6.17887 6.55729 6.86936 6.91073 7.07355 7.26693 7.72567 8.36753 9.23085 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012527 B = 0.003137 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.717308 B = 8924.191969 C =10004.146001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.104 4.104 3 H 0.077 0.923 4 C -0.113 4.113 5 C -0.036 4.036 6 C 0.207 3.793 7 N -0.496 5.496 8 C -0.101 4.101 9 C 0.597 3.403 10 O -0.585 6.585 11 N -0.679 5.679 12 C 0.144 3.856 13 H 0.106 0.894 14 C 0.123 3.877 15 N -0.616 5.616 16 C -0.244 4.244 17 H 0.076 0.924 18 C -0.060 4.060 19 N -0.943 5.943 20 Si 0.978 3.022 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.271 1.271 24 C 0.155 3.845 25 C 0.086 3.914 26 H 0.096 0.904 27 O -0.563 6.563 28 C 0.048 3.952 29 N -0.447 5.447 30 C 0.097 3.903 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.408 0.592 39 H 0.051 0.949 40 H 0.031 0.969 41 H 0.248 0.752 42 H 0.040 0.960 43 H 0.009 0.991 44 H 0.394 0.606 45 H 0.209 0.791 46 H 0.107 0.893 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.483 -5.509 0.369 25.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.123 4.123 3 H 0.095 0.905 4 C -0.150 4.150 5 C -0.075 4.075 6 C -0.058 4.058 7 N -0.216 5.216 8 C -0.229 4.229 9 C 0.385 3.615 10 O -0.467 6.467 11 N -0.326 5.326 12 C 0.038 3.962 13 H 0.124 0.876 14 C -0.003 4.003 15 N -0.343 5.343 16 C -0.373 4.373 17 H 0.093 0.907 18 C -0.254 4.254 19 N -0.591 5.591 20 Si 0.806 3.194 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.196 1.196 24 C 0.029 3.971 25 C 0.026 3.974 26 H 0.113 0.887 27 O -0.370 6.370 28 C -0.093 4.093 29 N -0.128 5.128 30 C -0.023 4.023 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.125 0.875 36 H 0.116 0.884 37 H 0.112 0.888 38 H 0.243 0.757 39 H 0.069 0.931 40 H 0.050 0.950 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.028 0.972 44 H 0.244 0.756 45 H 0.226 0.774 46 H 0.125 0.875 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -24.374 -5.393 0.860 24.979 hybrid contribution 1.029 0.935 -0.375 1.440 sum -23.345 -4.459 0.486 23.772 Atomic orbital electron populations 1.21723 0.91129 1.03275 1.03415 1.21489 0.98394 0.99698 0.92674 0.90494 1.21777 0.92182 1.01831 0.99244 1.20459 0.95702 1.03757 0.87608 1.24229 0.86415 1.03866 0.91303 1.70369 1.17947 1.18488 1.14794 1.20552 0.94102 1.16864 0.91340 1.17251 0.82854 0.75761 0.85603 1.90688 1.87408 1.53891 1.14697 1.45368 1.05622 1.69193 1.12444 1.22189 0.82876 0.95914 0.95267 0.87599 1.22179 0.94127 0.93979 0.90050 1.44521 1.68355 1.04013 1.17414 1.19363 1.34871 0.85129 0.97959 0.90656 1.25600 1.02508 1.01820 0.95459 1.70135 1.51211 1.34893 1.02869 0.85084 0.77385 0.79351 0.77603 1.21610 1.21581 1.19609 1.21722 0.96681 0.85062 0.93586 1.23261 0.93545 0.90649 0.89963 0.88667 1.86421 1.40646 1.66612 1.43353 1.22645 0.88203 1.02291 0.96204 1.45584 1.10002 1.50433 1.06747 1.22610 0.74003 1.03857 1.01837 0.91488 0.90830 0.91311 0.90667 0.87521 0.88414 0.88755 0.75724 0.93116 0.95045 0.94294 0.94185 0.97240 0.75602 0.77443 0.87485 0.87216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.50 9.17 71.98 0.66 0.16 16 2 C -0.10 -0.86 2.73 -10.67 -0.03 -0.89 16 3 H 0.08 0.80 8.11 -2.39 -0.02 0.78 16 4 C -0.11 -1.06 5.25 30.77 0.16 -0.90 16 5 C -0.04 -0.64 6.33 30.11 0.19 -0.45 16 6 C 0.21 5.55 7.64 138.05 1.05 6.61 16 7 N -0.50 -18.16 11.00 -176.08 -1.94 -20.10 16 8 C -0.10 -3.72 6.98 40.52 0.28 -3.44 16 9 C 0.60 25.18 7.81 86.63 0.68 25.86 16 10 O -0.58 -25.90 16.52 -4.10 -0.07 -25.96 16 11 N -0.68 -29.33 4.81 -438.95 -2.11 -31.44 16 12 C 0.14 5.93 3.31 46.46 0.15 6.08 16 13 H 0.11 4.11 7.54 -2.39 -0.02 4.09 16 14 C 0.12 5.64 6.95 86.94 0.60 6.24 16 15 N -0.62 -32.97 3.39 -691.54 -2.35 -35.32 16 16 C -0.24 -14.28 10.26 84.03 0.86 -13.41 16 17 H 0.08 4.30 7.84 -2.91 -0.02 4.28 16 18 C -0.06 -3.51 5.45 84.86 0.46 -3.04 16 19 N -0.94 -56.89 10.46 21.65 0.23 -56.67 16 20 Si 0.98 46.99 29.56 68.60 2.03 49.02 16 21 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 22 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 23 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 24 C 0.15 7.68 5.21 86.73 0.45 8.13 16 25 C 0.09 3.35 4.12 31.78 0.13 3.48 16 26 H 0.10 3.18 8.14 -2.38 -0.02 3.16 16 27 O -0.56 -20.12 12.67 -148.98 -1.89 -22.01 16 28 C 0.05 1.33 11.32 83.84 0.95 2.28 16 29 N -0.45 -9.79 3.11 -512.76 -1.60 -11.39 16 30 C 0.10 1.05 6.25 86.45 0.54 1.59 16 31 H 0.07 0.19 8.14 -2.39 -0.02 0.17 16 32 H 0.07 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 34 H 0.07 0.69 8.12 -2.39 -0.02 0.67 16 35 H 0.11 0.57 8.12 -2.39 -0.02 0.55 16 36 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 37 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.41 18.94 8.10 -92.71 -0.75 18.18 16 39 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.25 14.51 8.31 -92.70 -0.77 13.74 16 42 H 0.04 2.26 6.80 -2.39 -0.02 2.25 16 43 H 0.01 0.50 7.98 -2.39 -0.02 0.49 16 44 H 0.39 10.81 9.11 -74.06 -0.67 10.13 16 45 H 0.21 4.62 8.06 -2.91 -0.02 4.60 16 46 H 0.11 0.80 8.12 -2.39 -0.02 0.78 16 47 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 Total: -1.00 -80.50 381.11 -0.97 -81.47 By element: Atomic # 1 Polarization: 34.53 SS G_CDS: -0.43 Total: 34.10 kcal Atomic # 6 Polarization: 31.14 SS G_CDS: 7.15 Total: 38.29 kcal Atomic # 7 Polarization: -147.15 SS G_CDS: -7.77 Total: -154.91 kcal Atomic # 8 Polarization: -46.02 SS G_CDS: -1.96 Total: -47.97 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.02 kcal Total: -80.50 -0.97 -81.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083566794.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.775 kcal (2) G-P(sol) polarization free energy of solvation -80.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds