Wall clock time and date at job start Tue Mar 31 2020 18:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46875 * 2 1 4 4 O 1.42898 * 109.47151 * 120.00147 * 2 1 3 5 5 C 1.35486 * 116.99818 * 149.99787 * 4 2 1 6 6 C 1.39635 * 119.97351 * 179.97438 * 5 4 2 7 7 N 1.31533 * 120.03611 * 180.02562 * 6 5 4 8 8 C 1.33206 * 119.99150 * 359.97438 * 7 6 5 9 9 C 1.47907 * 120.02458 * 180.02562 * 8 7 6 10 10 O 1.21547 * 119.99910 * 186.82579 * 9 8 7 11 11 N 1.34768 * 119.99985 * 6.82238 * 9 8 7 12 12 C 1.46504 * 120.00234 * 5.27279 * 11 9 8 13 13 C 1.46506 * 120.00198 * 185.27294 * 11 9 8 14 14 C 1.52995 * 109.46861 * 90.96921 * 13 11 9 15 15 H 1.09001 * 112.96953 * 65.62142 * 14 13 11 16 16 C 1.53947 * 113.77250 * 293.93414 * 14 13 11 17 17 C 1.53944 * 86.29374 * 222.09427 * 16 14 13 18 18 N 1.47584 * 113.76388 * 197.44275 * 14 13 11 19 19 C 1.36938 * 134.49823 * 318.94160 * 18 14 13 20 20 H 1.08001 * 119.99509 * 5.52427 * 19 18 14 21 21 C 1.38811 * 120.00217 * 185.52610 * 19 18 14 22 22 N 1.31616 * 119.99856 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99847 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47192 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46897 * 119.99833 * 23 21 19 26 26 H 1.48499 * 109.46968 * 240.00220 * 23 21 19 27 27 C 1.39390 * 119.95154 * 0.26835 * 8 7 6 28 28 N 1.32084 * 119.96079 * 359.46662 * 27 8 7 29 29 H 1.08999 * 109.46908 * 299.99913 * 1 2 3 30 30 H 1.08998 * 109.47444 * 59.99635 * 1 2 3 31 31 H 1.09003 * 109.47015 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46908 * 240.00087 * 2 1 3 33 33 H 1.09010 * 109.46630 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47085 * 299.99956 * 3 2 1 35 35 H 1.08999 * 109.47281 * 60.00316 * 3 2 1 36 36 H 1.07996 * 119.98323 * 0.02667 * 6 5 4 37 37 H 1.09000 * 109.46939 * 275.30023 * 12 11 9 38 38 H 1.09001 * 109.47229 * 35.29647 * 12 11 9 39 39 H 1.08997 * 109.47439 * 155.29900 * 12 11 9 40 40 H 1.08994 * 109.47067 * 210.97404 * 13 11 9 41 41 H 1.09003 * 109.46400 * 330.96930 * 13 11 9 42 42 H 1.09000 * 113.73747 * 336.44641 * 16 14 13 43 43 H 1.09000 * 113.73685 * 107.63987 * 16 14 13 44 44 H 1.09004 * 113.76315 * 137.90378 * 17 16 14 45 45 H 1.08998 * 113.77251 * 269.19941 * 17 16 14 46 46 H 0.97005 * 119.99932 * 179.97438 * 22 21 19 47 47 H 1.08003 * 120.01869 * 179.70366 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 3.1970 -1.3121 1.0653 6 6 3.7213 -1.9900 2.1678 7 7 4.8774 -2.6098 2.0708 8 6 5.5483 -2.5914 0.9202 9 6 6.8481 -3.2886 0.8102 10 8 7.5183 -3.1694 -0.1968 11 7 7.2892 -4.0560 1.8264 12 6 6.4323 -4.2933 2.9907 13 6 8.6258 -4.6530 1.7669 14 6 9.6377 -3.7032 2.4110 15 1 9.4731 -3.5676 3.4799 16 6 9.8285 -2.3842 1.6403 17 6 11.3333 -2.5577 1.9149 18 7 11.0395 -3.9972 2.0551 19 6 11.7730 -5.1447 1.9124 20 1 11.2897 -6.1075 1.9885 21 6 13.1378 -5.0704 1.6699 22 7 13.7267 -3.8971 1.5767 23 14 14.1382 -6.6358 1.4745 24 1 13.2467 -7.8145 1.6199 25 1 14.7688 -6.6556 0.1302 26 1 15.1943 -6.6817 2.5175 27 6 5.0270 -1.9103 -0.1786 28 7 3.8634 -1.2930 -0.0807 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 3.1773 -2.0054 3.1006 37 1 6.5423 -3.4700 3.6966 38 1 5.3929 -4.3599 2.6693 39 1 6.7241 -5.2264 3.4726 40 1 8.6244 -5.6013 2.3042 41 1 8.9006 -4.8254 0.7262 42 1 9.5644 -2.4506 0.5849 43 1 9.3872 -1.5191 2.1352 44 1 11.9661 -2.3198 1.0598 45 1 11.6691 -2.0842 2.8374 46 1 14.6805 -3.8451 1.4076 47 1 5.5723 -1.8907 -1.1106 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085595609.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:31 Heat of formation + Delta-G solvation = 30.271264 kcal Electronic energy + Delta-G solvation = -28782.326797 eV Core-core repulsion = 24774.904385 eV Total energy + Delta-G solvation = -4007.422411 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.62986 -41.02845 -39.87036 -39.17280 -36.69279 -35.27237 -34.38818 -34.20135 -31.99024 -29.89890 -29.80808 -28.19403 -27.61071 -26.20103 -25.78412 -25.25417 -24.00783 -22.53816 -21.25702 -20.72715 -19.71258 -19.09049 -18.70419 -18.10772 -17.41066 -17.22053 -16.93206 -16.55327 -16.05853 -16.01370 -15.80699 -15.59629 -15.42458 -14.91160 -14.62638 -14.28954 -14.06997 -14.01295 -13.81986 -13.61616 -13.39303 -13.32305 -13.22738 -12.98863 -12.95327 -12.57901 -12.56630 -12.49385 -12.25885 -12.16841 -11.84794 -11.83241 -11.68512 -11.58922 -11.34620 -11.22082 -10.85541 -10.25273 -9.93745 -9.59503 -8.87994 -7.88369 -5.21486 -0.65339 -0.12497 1.45289 1.47439 1.57119 1.60687 1.65872 1.91186 2.49660 2.60438 2.84318 2.88846 3.28837 3.32996 3.43112 3.66013 3.85857 3.90614 3.96956 4.04843 4.21945 4.23400 4.33021 4.46109 4.47497 4.49167 4.57883 4.70944 4.71766 4.81322 4.85124 4.86749 4.90023 5.00998 5.02333 5.09112 5.18270 5.22032 5.24417 5.25823 5.51283 5.55293 5.73381 5.91110 5.92480 5.95041 6.31332 6.50360 6.93060 7.05971 7.63134 8.59721 9.30153 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.031118 B = 0.002223 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.570473 B =12590.394627 C =12872.624691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.070 3.930 3 C -0.167 4.167 4 O -0.289 6.289 5 C 0.298 3.702 6 C 0.050 3.950 7 N -0.370 5.370 8 C -0.029 4.029 9 C 0.571 3.429 10 O -0.563 6.563 11 N -0.588 5.588 12 C 0.089 3.911 13 C 0.129 3.871 14 C 0.136 3.864 15 H 0.058 0.942 16 C -0.135 4.135 17 C 0.161 3.839 18 N -0.628 5.628 19 C -0.225 4.225 20 H 0.090 0.910 21 C -0.075 4.075 22 N -0.958 5.958 23 Si 0.979 3.021 24 H -0.260 1.260 25 H -0.296 1.296 26 H -0.293 1.293 27 C 0.157 3.843 28 N -0.509 5.509 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.043 0.957 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.218 0.782 37 H 0.066 0.934 38 H 0.096 0.904 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.062 0.938 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.031 0.969 45 H 0.019 0.981 46 H 0.247 0.753 47 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.678 7.254 1.137 32.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.014 3.986 3 C -0.224 4.224 4 O -0.193 6.193 5 C 0.114 3.886 6 C -0.118 4.118 7 N -0.088 5.088 8 C -0.166 4.166 9 C 0.358 3.642 10 O -0.441 6.441 11 N -0.319 5.319 12 C -0.053 4.053 13 C 0.005 3.995 14 C 0.029 3.971 15 H 0.075 0.925 16 C -0.173 4.173 17 C 0.035 3.965 18 N -0.354 5.354 19 C -0.353 4.353 20 H 0.107 0.893 21 C -0.267 4.267 22 N -0.608 5.608 23 Si 0.807 3.193 24 H -0.184 1.184 25 H -0.223 1.223 26 H -0.220 1.220 27 C -0.001 4.001 28 N -0.239 5.239 29 H 0.091 0.909 30 H 0.114 0.886 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.062 0.938 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.235 0.765 37 H 0.084 0.916 38 H 0.114 0.886 39 H 0.095 0.905 40 H 0.106 0.894 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.049 0.951 45 H 0.037 0.963 46 H 0.056 0.944 47 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -31.234 7.124 0.757 32.045 hybrid contribution 1.427 -0.450 -0.321 1.530 sum -29.807 6.674 0.436 30.548 Atomic orbital electron populations 1.21922 0.90429 1.03539 1.04375 1.22730 0.96288 0.92914 0.86644 1.22219 1.00981 0.95172 1.04062 1.86323 1.29904 1.63138 1.39926 1.21578 0.86816 0.89096 0.91125 1.23677 0.92983 0.95547 0.99587 1.68898 1.05093 1.12268 1.22517 1.21592 0.97541 1.04523 0.92913 1.17853 0.84355 0.79013 0.82973 1.90806 1.58100 1.64075 1.31164 1.47687 1.15803 1.48298 1.20127 1.22268 0.94786 1.01785 0.86436 1.21513 0.80477 0.95966 1.01564 1.22648 0.84840 0.93049 0.96552 0.92475 1.23566 0.96416 0.96891 1.00457 1.22017 0.93524 0.84019 0.96942 1.46328 1.07120 1.01975 1.80022 1.19475 0.90023 0.85521 1.40275 0.89268 1.25703 0.97666 0.99965 1.03379 1.70050 1.09535 1.24026 1.57145 0.84995 0.78530 0.79204 0.76542 1.18439 1.22315 1.21987 1.23499 0.89273 0.87841 0.99484 1.68220 1.08810 1.21738 1.25104 0.90890 0.88565 0.91721 0.89977 0.93821 0.89159 0.91159 0.76529 0.91586 0.88587 0.90540 0.89371 0.91977 0.90816 0.91509 0.95068 0.96278 0.94446 0.79783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.56 71.98 0.69 -0.34 16 2 C 0.07 0.84 3.11 30.59 0.10 0.94 16 3 C -0.17 -1.86 9.53 71.98 0.69 -1.17 16 4 O -0.29 -4.27 9.76 -87.86 -0.86 -5.13 16 5 C 0.30 5.17 7.47 84.92 0.63 5.81 16 6 C 0.05 0.75 11.18 85.08 0.95 1.70 16 7 N -0.37 -7.32 6.34 -183.93 -1.17 -8.48 16 8 C -0.03 -0.71 6.55 41.78 0.27 -0.44 16 9 C 0.57 17.97 7.07 86.81 0.61 18.58 16 10 O -0.56 -21.80 14.14 -3.86 -0.05 -21.86 16 11 N -0.59 -17.41 2.83 -850.13 -2.41 -19.81 16 12 C 0.09 1.86 9.16 127.77 1.17 3.03 16 13 C 0.13 4.68 5.46 86.38 0.47 5.15 16 14 C 0.14 5.69 4.58 45.09 0.21 5.89 16 15 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 16 C -0.14 -5.78 7.09 31.25 0.22 -5.56 16 17 C 0.16 8.37 7.39 86.48 0.64 9.01 16 18 N -0.63 -33.64 3.57 -694.09 -2.48 -36.12 16 19 C -0.22 -12.87 10.51 84.03 0.88 -11.99 16 20 H 0.09 4.78 7.83 -2.91 -0.02 4.76 16 21 C -0.07 -4.42 5.50 84.86 0.47 -3.95 16 22 N -0.96 -60.60 11.53 21.65 0.25 -60.35 16 23 Si 0.98 47.17 29.55 68.60 2.03 49.20 16 24 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 25 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 26 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 27 C 0.16 3.60 10.76 84.93 0.91 4.51 16 28 N -0.51 -10.41 8.80 -307.08 -2.70 -13.11 16 29 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.08 1.17 6.99 -2.39 -0.02 1.15 16 33 H 0.04 0.66 8.14 -2.38 -0.02 0.64 16 34 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.22 1.59 8.06 -2.91 -0.02 1.57 16 37 H 0.07 1.32 8.00 -2.39 -0.02 1.31 16 38 H 0.10 1.79 5.77 -2.39 -0.01 1.77 16 39 H 0.08 1.39 7.84 -2.39 -0.02 1.37 16 40 H 0.09 2.90 7.87 -2.39 -0.02 2.88 16 41 H 0.06 2.67 7.33 -2.39 -0.02 2.65 16 42 H 0.07 3.40 6.44 -2.39 -0.02 3.38 16 43 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 44 H 0.03 1.81 7.42 -2.38 -0.02 1.80 16 45 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.25 15.11 8.31 -92.70 -0.77 14.34 16 47 H 0.19 4.13 7.65 -2.91 -0.02 4.10 16 Total: -1.00 -74.79 385.58 2.49 -72.30 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 0.97 Total: 12.20 kcal Atomic # 6 Polarization: 22.25 SS G_CDS: 8.92 Total: 31.17 kcal Atomic # 7 Polarization: -129.37 SS G_CDS: -8.51 Total: -137.88 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.91 Total: -26.99 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -74.79 2.49 -72.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085595609.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.570 kcal (2) G-P(sol) polarization free energy of solvation -74.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds