Wall clock time and date at job start Tue Mar 31 2020 18:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47516 * 2 1 4 4 O 1.42901 * 109.47087 * 120.00536 * 2 1 3 5 5 C 1.42906 * 114.00430 * 89.99681 * 4 2 1 6 6 C 1.50697 * 109.47309 * 179.97438 * 5 4 2 7 7 O 1.21284 * 119.99916 * 359.97438 * 6 5 4 8 8 N 1.34769 * 120.00046 * 180.02562 * 6 5 4 9 9 C 1.46502 * 120.00147 * 180.02562 * 8 6 5 10 10 H 1.09006 * 110.51595 * 36.09557 * 9 8 6 11 11 C 1.54729 * 110.46576 * 158.66198 * 9 8 6 12 12 C 1.53508 * 101.49786 * 143.00774 * 11 9 8 13 13 C 1.53048 * 115.28137 * 105.27740 * 12 11 9 14 14 N 1.47757 * 85.82154 * 93.67962 * 13 12 11 15 15 C 1.36940 * 134.41005 * 203.98599 * 14 13 12 16 16 H 1.08004 * 119.99579 * 179.97438 * 15 14 13 17 17 C 1.38804 * 120.00161 * 359.97438 * 15 14 13 18 18 N 1.31620 * 120.00106 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99967 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47025 * 59.99906 * 19 17 15 21 21 H 1.48501 * 109.46721 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47041 * 299.99741 * 19 17 15 23 23 C 1.47759 * 91.17438 * 23.96900 * 14 13 12 24 24 N 1.46156 * 106.64713 * 335.07866 * 12 11 9 25 25 C 1.37267 * 142.22427 * 196.44310 * 24 12 11 26 26 C 1.34520 * 106.92077 * 179.97438 * 25 24 12 27 27 N 1.33988 * 108.04417 * 0.02562 * 26 25 24 28 28 C 1.30864 * 109.34707 * 0.02562 * 27 26 25 29 29 H 1.09000 * 109.46671 * 299.99739 * 1 2 3 30 30 H 1.09002 * 109.47375 * 59.99953 * 1 2 3 31 31 H 1.09001 * 109.47679 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46974 * 239.99841 * 2 1 3 33 33 H 1.08999 * 109.47311 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.46837 * 300.00377 * 3 2 1 35 35 H 1.09001 * 109.46449 * 60.00224 * 3 2 1 36 36 H 1.09005 * 109.46650 * 59.99820 * 5 4 2 37 37 H 1.08997 * 109.46505 * 299.99942 * 5 4 2 38 38 H 0.96996 * 120.00323 * 359.97438 * 8 6 5 39 39 H 1.08997 * 111.01845 * 24.95605 * 11 9 8 40 40 H 1.08999 * 111.01878 * 261.06314 * 11 9 8 41 41 H 1.08995 * 113.81478 * 207.90275 * 13 12 11 42 42 H 1.09004 * 113.81797 * 339.45739 * 13 12 11 43 43 H 0.96996 * 120.00131 * 180.02562 * 18 17 15 44 44 H 1.09003 * 113.80977 * 221.79660 * 23 14 13 45 45 H 1.08999 * 113.81746 * 90.26198 * 23 14 13 46 46 H 1.07998 * 126.53999 * 359.97392 * 25 24 12 47 47 H 1.07995 * 125.98170 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6738 1.1667 5 6 2.2000 -2.0784 0.9885 6 6 2.7014 -2.6835 2.2744 7 8 2.8761 -1.9810 3.2475 8 7 2.9566 -4.0050 2.3428 9 6 3.4434 -4.5934 3.5930 10 1 2.9812 -4.1045 4.4507 11 6 3.1620 -6.1146 3.6206 12 6 4.4178 -6.6453 4.3263 13 6 4.2168 -7.0777 5.7806 14 7 3.9994 -8.4332 5.2343 15 6 3.3418 -9.5502 5.6759 16 1 3.3294 -10.4443 5.0701 17 6 2.6912 -9.5334 6.9019 18 7 2.7067 -8.4440 7.6403 19 14 1.7948 -11.0575 7.5045 20 1 2.7566 -12.1826 7.6242 21 1 1.1880 -10.7824 8.8317 22 1 0.7278 -11.4192 6.5372 23 6 4.7745 -8.1015 4.0209 24 7 5.4757 -5.6643 4.0923 25 6 6.8379 -5.5042 4.1455 26 6 7.0992 -4.2424 3.7593 27 7 5.9335 -3.6447 3.4778 28 6 4.9541 -4.4899 3.6755 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1301 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9562 0.8900 36 1 2.9319 -2.2468 0.1985 37 1 1.2537 -2.5434 0.7124 38 1 2.8172 -4.5668 1.5645 39 1 3.0823 -6.5158 2.6104 40 1 2.2653 -6.3359 4.1994 41 1 5.1134 -6.9890 6.3940 42 1 3.3332 -6.6454 6.2503 43 1 2.2524 -8.4324 8.4972 44 1 4.3320 -8.4790 3.0991 45 1 5.8389 -8.3209 4.1049 46 1 7.5619 -6.2491 4.4411 47 1 8.0774 -3.7901 3.6886 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101615447.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:41 Heat of formation + Delta-G solvation = 56.077160 kcal Electronic energy + Delta-G solvation = -29042.258984 eV Core-core repulsion = 25035.955600 eV Total energy + Delta-G solvation = -4006.303384 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.26887 -39.72095 -38.61300 -38.11331 -35.46783 -33.40072 -32.99643 -31.84457 -30.79112 -28.24855 -28.13362 -27.48761 -26.97208 -25.37148 -24.25056 -22.19507 -21.58349 -21.25787 -20.91036 -19.72285 -18.67813 -17.43009 -17.25899 -17.01165 -16.18247 -16.09125 -15.77096 -15.09055 -14.83671 -14.55460 -14.52836 -14.11367 -14.04465 -13.68893 -13.63201 -13.33097 -13.10481 -12.93068 -12.77048 -12.48855 -12.40882 -12.19407 -12.12722 -11.84076 -11.67361 -11.57880 -11.14157 -11.03958 -10.99441 -10.92081 -10.60098 -10.25062 -9.88751 -9.81490 -9.73418 -9.51193 -9.21033 -9.02447 -8.98853 -8.03675 -7.18987 -5.98151 -3.34089 2.31330 2.65300 2.71775 3.11835 3.28285 3.33696 3.34792 3.49606 3.81401 4.13720 4.27151 4.46881 4.53720 4.69964 4.75440 4.80307 4.87288 4.90381 4.92810 4.95149 5.05564 5.28754 5.30871 5.37958 5.41368 5.46369 5.51447 5.57029 5.64647 5.83236 5.88605 5.90173 5.95028 5.98697 6.05716 6.15883 6.19117 6.37627 6.74957 6.81286 6.89706 6.91424 7.19150 7.23750 7.42995 7.49795 7.72789 8.26725 8.51043 8.80886 9.47519 10.27713 11.18536 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015026 B = 0.002725 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.962023 B =10271.277638 C =11584.960625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.079 3.921 3 C -0.150 4.150 4 O -0.356 6.356 5 C 0.047 3.953 6 C 0.517 3.483 7 O -0.502 6.502 8 N -0.717 5.717 9 C 0.233 3.767 10 H 0.118 0.882 11 C -0.095 4.095 12 C 0.102 3.898 13 C 0.171 3.829 14 N -0.600 5.600 15 C -0.232 4.232 16 H 0.084 0.916 17 C -0.001 4.001 18 N -0.918 5.918 19 Si 0.917 3.083 20 H -0.284 1.284 21 H -0.288 1.288 22 H -0.282 1.282 23 C 0.125 3.875 24 N -0.452 5.452 25 C -0.027 4.027 26 C -0.036 4.036 27 N -0.471 5.471 28 C 0.167 3.833 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.401 0.599 39 H 0.089 0.911 40 H 0.117 0.883 41 H 0.036 0.964 42 H 0.087 0.913 43 H 0.259 0.741 44 H 0.057 0.943 45 H 0.041 0.959 46 H 0.167 0.833 47 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.232 10.961 -17.088 20.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.021 3.979 3 C -0.207 4.207 4 O -0.274 6.274 5 C -0.033 4.033 6 C 0.302 3.698 7 O -0.374 6.374 8 N -0.372 5.372 9 C 0.126 3.874 10 H 0.136 0.864 11 C -0.133 4.133 12 C 0.017 3.983 13 C 0.045 3.955 14 N -0.327 5.327 15 C -0.359 4.359 16 H 0.102 0.898 17 C -0.199 4.199 18 N -0.563 5.563 19 Si 0.746 3.254 20 H -0.210 1.210 21 H -0.214 1.214 22 H -0.208 1.208 23 C -0.002 4.002 24 N -0.135 5.135 25 C -0.161 4.161 26 C -0.185 4.185 27 N -0.190 5.190 28 C -0.097 4.097 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.236 0.764 39 H 0.108 0.892 40 H 0.135 0.865 41 H 0.054 0.946 42 H 0.106 0.894 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.059 0.941 46 H 0.184 0.816 47 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -1.351 11.985 -16.129 20.140 hybrid contribution -0.007 -2.213 0.165 2.219 sum -1.357 9.773 -15.965 18.768 Atomic orbital electron populations 1.22320 0.95875 1.02432 1.02761 1.22164 0.93727 0.94089 0.87917 1.21852 1.02064 0.94246 1.02542 1.88089 1.86545 1.17699 1.35056 1.22197 1.01009 0.84193 0.95911 1.20171 0.77809 0.82002 0.89821 1.90771 1.49323 1.59933 1.37349 1.45749 1.68513 1.08505 1.14385 1.19960 0.84664 0.94094 0.88664 0.86447 1.22578 0.97958 0.90635 1.02155 1.23754 0.84499 0.87930 1.02144 1.22510 1.00307 0.84449 0.88238 1.45783 1.58080 1.11048 1.17773 1.18918 1.25387 0.89787 1.01846 0.89808 1.24834 1.00577 0.97853 0.96601 1.69773 1.46669 1.26739 1.13147 0.86139 0.79437 0.81750 0.78046 1.21020 1.21374 1.20817 1.22707 0.96091 0.88546 0.92854 1.46564 1.05723 1.13717 1.47452 1.22343 0.82917 1.00299 1.10496 1.22225 0.96924 0.91752 1.07635 1.69808 0.97170 1.30942 1.21037 1.24513 0.96368 0.84124 1.04713 0.91522 0.91604 0.92459 0.92109 0.91791 0.91247 0.91561 0.90329 0.90412 0.76433 0.89210 0.86461 0.94615 0.89445 0.93110 0.92465 0.94124 0.81574 0.81396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.28 9.53 37.16 0.35 -0.93 16 2 C 0.08 0.68 3.34 -26.73 -0.09 0.59 16 3 C -0.15 -1.18 9.56 37.16 0.36 -0.82 16 4 O -0.36 -4.45 9.52 -55.14 -0.52 -4.98 16 5 C 0.05 0.48 6.23 36.00 0.22 0.71 16 6 C 0.52 7.35 7.90 -10.99 -0.09 7.27 16 7 O -0.50 -9.74 16.21 -14.35 -0.23 -9.97 16 8 N -0.72 -8.80 5.16 -53.58 -0.28 -9.07 16 9 C 0.23 3.56 3.23 -67.70 -0.22 3.34 16 10 H 0.12 1.99 7.67 -51.93 -0.40 1.59 16 11 C -0.09 -1.37 6.17 -25.56 -0.16 -1.53 16 12 C 0.10 1.78 1.56 -136.72 -0.21 1.57 16 13 C 0.17 3.77 6.94 -3.33 -0.02 3.75 16 14 N -0.60 -13.98 3.69 -182.63 -0.67 -14.66 16 15 C -0.23 -5.99 10.70 -15.06 -0.16 -6.15 16 16 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 17 C 0.00 -0.03 5.50 -17.43 -0.10 -0.12 16 18 N -0.92 -25.60 11.39 55.49 0.63 -24.96 16 19 Si 0.92 20.84 29.55 -169.99 -5.02 15.82 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 23 C 0.12 2.32 8.46 -3.35 -0.03 2.29 16 24 N -0.45 -7.84 3.37 -103.51 -0.35 -8.19 16 25 C -0.03 -0.43 12.03 -16.43 -0.20 -0.63 16 26 C -0.04 -0.59 11.86 -17.93 -0.21 -0.81 16 27 N -0.47 -8.98 11.25 -10.49 -0.12 -9.10 16 28 C 0.17 2.98 8.22 -154.59 -1.27 1.71 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.39 7.87 -51.93 -0.41 -0.02 16 32 H 0.06 0.41 7.79 -51.93 -0.40 0.01 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.63 8.09 -51.93 -0.42 0.21 16 37 H 0.08 0.57 7.87 -51.93 -0.41 0.16 16 38 H 0.40 3.43 8.38 -40.82 -0.34 3.09 16 39 H 0.09 1.06 7.76 -51.93 -0.40 0.66 16 40 H 0.12 1.79 7.92 -51.93 -0.41 1.38 16 41 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.09 2.11 7.09 -51.93 -0.37 1.74 16 43 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.06 0.96 8.09 -51.93 -0.42 0.54 16 45 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.17 2.25 8.06 -52.49 -0.42 1.83 16 47 H 0.17 2.21 8.06 -52.49 -0.42 1.78 16 LS Contribution 390.46 15.07 5.88 5.88 Total: -1.00 -34.87 390.46 -9.84 -44.71 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -7.33 Total: 4.29 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: -1.82 Total: 10.23 kcal Atomic # 7 Polarization: -65.20 SS G_CDS: -0.79 Total: -65.98 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.76 Total: -14.95 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.87 -9.84 -44.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101615447.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.785 kcal (2) G-P(sol) polarization free energy of solvation -34.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds