Wall clock time and date at job start Tue Mar 31 2020 18:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47516 * 2 1 4 4 O 1.42901 * 109.47087 * 120.00536 * 2 1 3 5 5 C 1.42906 * 114.00430 * 89.99681 * 4 2 1 6 6 C 1.50697 * 109.47309 * 179.97438 * 5 4 2 7 7 O 1.21284 * 119.99916 * 359.97438 * 6 5 4 8 8 N 1.34769 * 120.00046 * 180.02562 * 6 5 4 9 9 C 1.46502 * 120.00147 * 180.02562 * 8 6 5 10 10 H 1.09006 * 110.51595 * 36.09557 * 9 8 6 11 11 C 1.54729 * 110.46576 * 158.66198 * 9 8 6 12 12 C 1.53508 * 101.49786 * 143.00774 * 11 9 8 13 13 C 1.53048 * 115.28137 * 105.27740 * 12 11 9 14 14 N 1.47757 * 85.82154 * 93.67962 * 13 12 11 15 15 C 1.36940 * 134.41005 * 203.98599 * 14 13 12 16 16 H 1.08004 * 119.99579 * 179.97438 * 15 14 13 17 17 C 1.38804 * 120.00161 * 359.97438 * 15 14 13 18 18 N 1.31620 * 120.00106 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99967 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47025 * 59.99906 * 19 17 15 21 21 H 1.48501 * 109.46721 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47041 * 299.99741 * 19 17 15 23 23 C 1.47759 * 91.17438 * 23.96900 * 14 13 12 24 24 N 1.46156 * 106.64713 * 335.07866 * 12 11 9 25 25 C 1.37267 * 142.22427 * 196.44310 * 24 12 11 26 26 C 1.34520 * 106.92077 * 179.97438 * 25 24 12 27 27 N 1.33988 * 108.04417 * 0.02562 * 26 25 24 28 28 C 1.30864 * 109.34707 * 0.02562 * 27 26 25 29 29 H 1.09000 * 109.46671 * 299.99739 * 1 2 3 30 30 H 1.09002 * 109.47375 * 59.99953 * 1 2 3 31 31 H 1.09001 * 109.47679 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46974 * 239.99841 * 2 1 3 33 33 H 1.08999 * 109.47311 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.46837 * 300.00377 * 3 2 1 35 35 H 1.09001 * 109.46449 * 60.00224 * 3 2 1 36 36 H 1.09005 * 109.46650 * 59.99820 * 5 4 2 37 37 H 1.08997 * 109.46505 * 299.99942 * 5 4 2 38 38 H 0.96996 * 120.00323 * 359.97438 * 8 6 5 39 39 H 1.08997 * 111.01845 * 24.95605 * 11 9 8 40 40 H 1.08999 * 111.01878 * 261.06314 * 11 9 8 41 41 H 1.08995 * 113.81478 * 207.90275 * 13 12 11 42 42 H 1.09004 * 113.81797 * 339.45739 * 13 12 11 43 43 H 0.96996 * 120.00131 * 180.02562 * 18 17 15 44 44 H 1.09003 * 113.80977 * 221.79660 * 23 14 13 45 45 H 1.08999 * 113.81746 * 90.26198 * 23 14 13 46 46 H 1.07998 * 126.53999 * 359.97392 * 25 24 12 47 47 H 1.07995 * 125.98170 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6738 1.1667 5 6 2.2000 -2.0784 0.9885 6 6 2.7014 -2.6835 2.2744 7 8 2.8761 -1.9810 3.2475 8 7 2.9566 -4.0050 2.3428 9 6 3.4434 -4.5934 3.5930 10 1 2.9812 -4.1045 4.4507 11 6 3.1620 -6.1146 3.6206 12 6 4.4178 -6.6453 4.3263 13 6 4.2168 -7.0777 5.7806 14 7 3.9994 -8.4332 5.2343 15 6 3.3418 -9.5502 5.6759 16 1 3.3294 -10.4443 5.0701 17 6 2.6912 -9.5334 6.9019 18 7 2.7067 -8.4440 7.6403 19 14 1.7948 -11.0575 7.5045 20 1 2.7566 -12.1826 7.6242 21 1 1.1880 -10.7824 8.8317 22 1 0.7278 -11.4192 6.5372 23 6 4.7745 -8.1015 4.0209 24 7 5.4757 -5.6643 4.0923 25 6 6.8379 -5.5042 4.1455 26 6 7.0992 -4.2424 3.7593 27 7 5.9335 -3.6447 3.4778 28 6 4.9541 -4.4899 3.6755 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1301 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9562 0.8900 36 1 2.9319 -2.2468 0.1985 37 1 1.2537 -2.5434 0.7124 38 1 2.8172 -4.5668 1.5645 39 1 3.0823 -6.5158 2.6104 40 1 2.2653 -6.3359 4.1994 41 1 5.1134 -6.9890 6.3940 42 1 3.3332 -6.6454 6.2503 43 1 2.2524 -8.4324 8.4972 44 1 4.3320 -8.4790 3.0991 45 1 5.8389 -8.3209 4.1049 46 1 7.5619 -6.2491 4.4411 47 1 8.0774 -3.7901 3.6886 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101615447.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:40 Heat of formation + Delta-G solvation = 32.778570 kcal Electronic energy + Delta-G solvation = -29043.269287 eV Core-core repulsion = 25035.955600 eV Total energy + Delta-G solvation = -4007.313687 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.62119 -40.78935 -40.12126 -38.97656 -36.78747 -34.93307 -33.74766 -33.52000 -32.04349 -29.69428 -29.35925 -28.42722 -27.94979 -27.01196 -25.72457 -23.67206 -22.69023 -22.21402 -22.03846 -21.06679 -20.10421 -18.90487 -18.43407 -18.08506 -17.48636 -17.13146 -16.93881 -16.67952 -16.05908 -15.80976 -15.62925 -15.53617 -15.26696 -14.94039 -14.85924 -14.64836 -14.32169 -13.99701 -13.82008 -13.59263 -13.47378 -13.25805 -13.18632 -13.02638 -12.85432 -12.81804 -12.66362 -12.62095 -12.31553 -12.14499 -11.98383 -11.65647 -11.60461 -10.96988 -10.88780 -10.85638 -10.60592 -10.45097 -10.34717 -9.34505 -9.08745 -7.96920 -5.33580 1.01661 1.47084 1.49333 1.54286 1.56686 1.66320 1.85463 2.22391 2.45555 2.83096 3.00082 3.08050 3.27780 3.37158 3.47461 3.59605 3.79004 4.04055 4.06356 4.12693 4.18037 4.22359 4.24700 4.32744 4.37771 4.55685 4.59048 4.67541 4.71647 4.72570 4.78797 4.83978 4.85960 4.95275 4.97750 5.06030 5.11555 5.28999 5.32558 5.35387 5.37420 5.46629 5.77986 5.90829 6.11445 6.20039 6.54619 6.81406 7.17350 7.25978 7.52386 8.38931 9.19401 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015026 B = 0.002725 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.962023 B =10271.277638 C =11584.960625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.072 3.928 3 C -0.151 4.151 4 O -0.396 6.396 5 C 0.052 3.948 6 C 0.511 3.489 7 O -0.564 6.564 8 N -0.699 5.699 9 C 0.238 3.762 10 H 0.092 0.908 11 C -0.081 4.081 12 C 0.123 3.877 13 C 0.167 3.833 14 N -0.623 5.623 15 C -0.234 4.234 16 H 0.095 0.905 17 C -0.060 4.060 18 N -0.953 5.953 19 Si 0.980 3.020 20 H -0.279 1.279 21 H -0.299 1.299 22 H -0.269 1.269 23 C 0.131 3.869 24 N -0.458 5.458 25 C -0.031 4.031 26 C -0.041 4.041 27 N -0.504 5.504 28 C 0.156 3.844 29 H 0.048 0.952 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.053 0.947 34 H 0.095 0.905 35 H 0.049 0.951 36 H 0.107 0.893 37 H 0.114 0.886 38 H 0.423 0.577 39 H 0.130 0.870 40 H 0.108 0.892 41 H 0.009 0.991 42 H 0.058 0.942 43 H 0.250 0.750 44 H 0.087 0.913 45 H 0.047 0.953 46 H 0.191 0.809 47 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.417 9.879 -20.512 22.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.015 3.985 3 C -0.208 4.208 4 O -0.315 6.315 5 C -0.028 4.028 6 C 0.299 3.701 7 O -0.441 6.441 8 N -0.354 5.354 9 C 0.130 3.870 10 H 0.109 0.891 11 C -0.120 4.120 12 C 0.038 3.962 13 C 0.041 3.959 14 N -0.350 5.350 15 C -0.362 4.362 16 H 0.113 0.887 17 C -0.254 4.254 18 N -0.601 5.601 19 Si 0.808 3.192 20 H -0.205 1.205 21 H -0.226 1.226 22 H -0.195 1.195 23 C 0.006 3.994 24 N -0.141 5.141 25 C -0.164 4.164 26 C -0.189 4.189 27 N -0.224 5.224 28 C -0.108 4.108 29 H 0.067 0.933 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.073 0.927 34 H 0.113 0.887 35 H 0.068 0.932 36 H 0.125 0.875 37 H 0.131 0.869 38 H 0.262 0.738 39 H 0.148 0.852 40 H 0.126 0.874 41 H 0.027 0.973 42 H 0.076 0.924 43 H 0.059 0.941 44 H 0.105 0.895 45 H 0.065 0.935 46 H 0.208 0.792 47 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -1.516 10.873 -19.641 22.501 hybrid contribution 0.159 -1.821 1.214 2.194 sum -1.357 9.052 -18.427 20.575 Atomic orbital electron populations 1.22305 0.94990 1.02887 1.02920 1.22422 0.94471 0.94055 0.87581 1.21899 1.01473 0.94420 1.03024 1.88054 1.87129 1.18917 1.37441 1.22316 1.03294 0.83467 0.93692 1.21053 0.76546 0.81965 0.90579 1.90744 1.52154 1.61411 1.39808 1.45552 1.67330 1.08422 1.14098 1.19737 0.83486 0.94489 0.89324 0.89055 1.22554 0.95906 0.89785 1.03712 1.23325 0.85914 0.88146 0.98790 1.22311 0.97864 0.84951 0.90814 1.46026 1.58705 1.10764 1.19463 1.19340 1.24362 0.90744 1.01712 0.88738 1.25641 1.02131 1.00403 0.97222 1.69974 1.48185 1.28699 1.13209 0.85138 0.78498 0.78591 0.77007 1.20538 1.22594 1.19459 1.22845 0.95963 0.88568 0.92074 1.46585 1.06205 1.13514 1.47780 1.22833 0.82810 1.00933 1.09833 1.22749 0.97387 0.91827 1.06895 1.69809 0.98386 1.31890 1.22269 1.24890 0.97200 0.84055 1.04682 0.93299 0.89492 0.91855 0.89662 0.92742 0.88653 0.93185 0.87509 0.86881 0.73842 0.85221 0.87384 0.97271 0.92378 0.94080 0.89464 0.93510 0.79221 0.78641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.18 9.53 71.98 0.69 -1.49 16 2 C 0.07 1.09 3.34 30.59 0.10 1.19 16 3 C -0.15 -2.23 9.56 71.98 0.69 -1.54 16 4 O -0.40 -9.55 9.52 -129.94 -1.24 -10.79 16 5 C 0.05 0.93 6.23 71.24 0.44 1.38 16 6 C 0.51 14.18 7.90 87.66 0.69 14.87 16 7 O -0.56 -22.65 16.21 16.00 0.26 -22.39 16 8 N -0.70 -16.01 5.16 -441.83 -2.28 -18.29 16 9 C 0.24 7.18 3.23 45.14 0.15 7.32 16 10 H 0.09 3.26 7.67 -2.38 -0.02 3.24 16 11 C -0.08 -2.22 6.17 31.35 0.19 -2.03 16 12 C 0.12 4.22 1.56 5.61 0.01 4.23 16 13 C 0.17 7.59 6.94 86.15 0.60 8.19 16 14 N -0.62 -28.76 3.69 -731.71 -2.70 -31.46 16 15 C -0.23 -11.91 10.70 84.03 0.90 -11.02 16 16 H 0.09 4.50 7.83 -2.91 -0.02 4.48 16 17 C -0.06 -3.22 5.50 84.86 0.47 -2.75 16 18 N -0.95 -54.89 11.39 21.65 0.25 -54.64 16 19 Si 0.98 42.97 29.55 68.60 2.03 45.00 16 20 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 21 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 22 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 23 C 0.13 4.57 8.46 86.14 0.73 5.30 16 24 N -0.46 -15.45 3.37 -481.40 -1.62 -17.07 16 25 C -0.03 -0.96 12.03 82.99 1.00 0.04 16 26 C -0.04 -1.28 11.86 83.51 0.99 -0.29 16 27 N -0.50 -18.98 11.25 -187.12 -2.11 -21.08 16 28 C 0.16 5.48 8.22 138.31 1.14 6.62 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.09 0.70 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.71 7.87 -2.39 -0.02 0.69 16 32 H 0.09 0.86 7.79 -2.39 -0.02 0.85 16 33 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.11 1.33 8.09 -2.38 -0.02 1.31 16 37 H 0.11 1.24 7.87 -2.39 -0.02 1.22 16 38 H 0.42 5.81 8.38 -92.71 -0.78 5.03 16 39 H 0.13 2.53 7.76 -2.39 -0.02 2.51 16 40 H 0.11 3.25 7.92 -2.39 -0.02 3.23 16 41 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.06 2.96 7.09 -2.38 -0.02 2.94 16 43 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 44 H 0.09 2.57 8.09 -2.39 -0.02 2.55 16 45 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.19 4.75 8.06 -2.91 -0.02 4.73 16 47 H 0.20 4.75 8.06 -2.91 -0.02 4.73 16 Total: -1.00 -79.73 390.46 1.56 -78.16 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 0.20 Total: 22.54 kcal Atomic # 6 Polarization: 21.24 SS G_CDS: 8.78 Total: 30.02 kcal Atomic # 7 Polarization: -134.08 SS G_CDS: -8.46 Total: -142.54 kcal Atomic # 8 Polarization: -32.20 SS G_CDS: -0.98 Total: -33.18 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -79.73 1.56 -78.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101615447.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.941 kcal (2) G-P(sol) polarization free energy of solvation -79.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds