Wall clock time and date at job start Tue Mar 31 2020 19:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.46068 * 2 1 4 4 C 1.53039 * 109.46355 * 119.98226 * 2 1 3 5 5 C 1.53114 * 109.27897 * 179.18507 * 4 2 1 6 6 C 1.53122 * 109.15866 * 302.34394 * 5 4 2 7 7 H 1.09004 * 109.50444 * 177.63590 * 6 5 4 8 8 N 1.46500 * 109.50244 * 297.71393 * 6 5 4 9 9 C 1.34776 * 120.00120 * 274.92369 * 8 6 5 10 10 O 1.21697 * 119.99793 * 359.97438 * 9 8 6 11 11 C 1.46674 * 120.00343 * 179.97438 * 9 8 6 12 12 C 1.37870 * 126.23668 * 179.97438 * 11 9 8 13 13 C 1.39834 * 107.08919 * 180.02562 * 12 11 9 14 14 C 1.35455 * 107.86335 * 359.74080 * 13 12 11 15 15 N 1.35537 * 108.86868 * 0.42719 * 14 13 12 16 16 H 0.96997 * 125.67290 * 179.83288 * 15 14 13 17 17 C 1.53035 * 109.31219 * 57.67435 * 6 5 4 18 18 N 1.46851 * 109.44923 * 240.02708 * 2 1 3 19 19 C 1.46897 * 110.99850 * 54.15164 * 18 2 1 20 20 C 1.50705 * 109.46710 * 196.05807 * 19 18 2 21 21 O 1.21292 * 120.00058 * 0.02562 * 20 19 18 22 22 N 1.34774 * 119.99731 * 179.97438 * 20 19 18 23 23 C 1.37102 * 120.00059 * 180.02562 * 22 20 19 24 24 H 1.08003 * 119.99731 * 359.97438 * 23 22 20 25 25 C 1.38944 * 120.00478 * 179.97438 * 23 22 20 26 26 N 1.31406 * 120.00420 * 179.97438 * 25 23 22 27 27 Si 1.86805 * 119.99571 * 0.02562 * 25 23 22 28 28 H 1.48501 * 109.47304 * 90.00242 * 27 25 23 29 29 H 1.48506 * 109.46830 * 210.00035 * 27 25 23 30 30 H 1.48495 * 109.47150 * 329.99747 * 27 25 23 31 31 H 1.09001 * 109.46530 * 292.56311 * 1 2 3 32 32 H 1.08999 * 109.47177 * 52.56298 * 1 2 3 33 33 H 1.08998 * 109.47348 * 172.56736 * 1 2 3 34 34 H 1.08996 * 109.50325 * 59.23948 * 4 2 1 35 35 H 1.09008 * 109.53216 * 299.13918 * 4 2 1 36 36 H 1.08998 * 109.52769 * 182.43812 * 5 4 2 37 37 H 1.09005 * 109.52482 * 62.24467 * 5 4 2 38 38 H 0.97002 * 120.00227 * 94.91856 * 8 6 5 39 39 H 1.07999 * 126.45660 * 0.04751 * 12 11 9 40 40 H 1.07997 * 126.07110 * 180.02562 * 13 12 11 41 41 H 1.07995 * 125.56941 * 180.26549 * 14 13 12 42 42 H 1.08993 * 109.46580 * 60.81921 * 17 6 5 43 43 H 1.08999 * 109.46315 * 180.78978 * 17 6 5 44 44 H 1.08995 * 109.47464 * 316.05623 * 19 18 2 45 45 H 1.09001 * 109.47073 * 76.06368 * 19 18 2 46 46 H 0.97003 * 120.00507 * 0.02562 * 22 20 19 47 47 H 0.97004 * 120.00404 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 1.2498 5 6 3.5710 -0.7364 1.2353 6 6 4.0546 -1.4192 -0.0471 7 1 5.1437 -1.3959 -0.0833 8 7 3.5943 -2.8099 -0.0642 9 6 4.3122 -3.7651 0.5591 10 8 5.3431 -3.4724 1.1359 11 6 3.8511 -5.1574 0.5425 12 6 4.4810 -6.2317 1.1340 13 6 3.7006 -7.3617 0.8707 14 6 2.6282 -6.9658 0.1440 15 7 2.7109 -5.6296 -0.0672 16 1 2.0709 -5.0945 -0.5620 17 6 3.4871 -0.6782 -1.2599 18 7 2.0190 -0.6918 -1.1995 19 6 1.4370 -0.1104 -2.4165 20 6 1.6322 -1.0605 -3.5700 21 8 2.1999 -2.1180 -3.3953 22 7 1.1751 -0.7354 -4.7955 23 6 1.3522 -1.5999 -5.8448 24 1 1.8585 -2.5412 -5.6893 25 6 0.8805 -1.2651 -7.1081 26 7 1.0507 -2.0934 -8.1139 27 14 0.0055 0.3633 -7.3770 28 1 0.9989 1.4043 -7.7443 29 1 -0.9864 0.2172 -8.4724 30 1 -0.6915 0.7629 -6.1281 31 1 -0.3632 0.3943 0.9490 32 1 -0.3633 0.6247 -0.8160 33 1 -0.3634 -1.0190 -0.1329 34 1 1.6658 -1.7448 1.2575 35 1 1.6898 -0.1988 2.1403 36 1 3.9381 -1.2868 2.1016 37 1 3.9459 0.2866 1.2669 38 1 2.7727 -3.0433 -0.5242 39 1 5.4033 -6.2053 1.6954 40 1 3.9125 -8.3702 1.1937 41 1 1.8378 -7.6102 -0.2114 42 1 3.8411 0.3526 -1.2540 43 1 3.8184 -1.1706 -2.1741 44 1 0.3715 0.0612 -2.2636 45 1 1.9294 0.8364 -2.6383 46 1 0.7207 0.1102 -4.9352 47 1 0.7217 -1.8595 -8.9959 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131784690.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:56 Heat of formation + Delta-G solvation = -41.348963 kcal Electronic energy + Delta-G solvation = -29704.562664 eV Core-core repulsion = 25694.034566 eV Total energy + Delta-G solvation = -4010.528098 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.22116 -41.18432 -40.10714 -39.11410 -36.08903 -35.81161 -33.81516 -33.64733 -32.68086 -31.78391 -30.03472 -29.25097 -27.64462 -26.24417 -24.25466 -24.05418 -22.26512 -21.52570 -21.18049 -21.02725 -20.27893 -20.09518 -19.95447 -17.76117 -17.20057 -17.09763 -16.78915 -16.57210 -16.10708 -15.93410 -15.60349 -15.43046 -15.05203 -14.91338 -14.83704 -14.56426 -14.42428 -14.33577 -14.09644 -13.91400 -13.67629 -13.49026 -13.19471 -13.12972 -12.89133 -12.85184 -12.66831 -12.40789 -12.38234 -11.98191 -11.78417 -11.70765 -11.42710 -11.21912 -11.13293 -10.37789 -10.20651 -10.09263 -9.95669 -9.22943 -9.15635 -8.39165 -5.98890 0.48725 1.30044 1.35600 1.44125 1.84998 2.01714 2.12421 2.23737 2.27156 2.38674 2.60010 3.17766 3.22807 3.65564 3.83212 3.93979 3.97533 4.02796 4.24389 4.30824 4.36104 4.40484 4.42683 4.43870 4.47499 4.52438 4.55545 4.63129 4.81516 4.87854 4.99287 5.01405 5.06070 5.11307 5.20571 5.26426 5.28984 5.41051 5.51746 5.55667 5.76611 5.91903 5.96444 6.02879 6.22862 6.45670 6.60631 6.63087 6.92551 7.15003 7.44788 8.01962 8.78456 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011113 B = 0.003542 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.021597 B = 7903.800320 C = 9518.280707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.081 3.919 3 H 0.057 0.943 4 C -0.101 4.101 5 C -0.124 4.124 6 C 0.154 3.846 7 H 0.074 0.926 8 N -0.699 5.699 9 C 0.583 3.417 10 O -0.579 6.579 11 C -0.084 4.084 12 C -0.126 4.126 13 C -0.224 4.224 14 C 0.035 3.965 15 N -0.533 5.533 16 H 0.424 0.576 17 C 0.053 3.947 18 N -0.524 5.524 19 C 0.048 3.952 20 C 0.455 3.545 21 O -0.599 6.599 22 N -0.596 5.596 23 C -0.321 4.321 24 H 0.056 0.944 25 C -0.016 4.016 26 N -0.937 5.937 27 Si 0.961 3.039 28 H -0.261 1.261 29 H -0.278 1.278 30 H -0.229 1.229 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.090 0.910 36 H 0.057 0.943 37 H 0.088 0.912 38 H 0.408 0.592 39 H 0.141 0.859 40 H 0.166 0.834 41 H 0.207 0.793 42 H 0.063 0.937 43 H 0.060 0.940 44 H 0.125 0.875 45 H 0.076 0.924 46 H 0.387 0.613 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.725 4.513 19.880 20.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.027 4.027 3 H 0.075 0.925 4 C -0.139 4.139 5 C -0.163 4.163 6 C 0.049 3.951 7 H 0.092 0.908 8 N -0.349 5.349 9 C 0.372 3.628 10 O -0.461 6.461 11 C -0.198 4.198 12 C -0.153 4.153 13 C -0.248 4.248 14 C -0.102 4.102 15 N -0.129 5.129 16 H 0.263 0.737 17 C -0.075 4.075 18 N -0.250 5.250 19 C -0.083 4.083 20 C 0.242 3.758 21 O -0.483 6.483 22 N -0.238 5.238 23 C -0.450 4.450 24 H 0.075 0.925 25 C -0.214 4.214 26 N -0.579 5.579 27 Si 0.781 3.219 28 H -0.186 1.186 29 H -0.204 1.204 30 H -0.152 1.152 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.108 0.892 36 H 0.076 0.924 37 H 0.107 0.893 38 H 0.245 0.755 39 H 0.159 0.841 40 H 0.184 0.816 41 H 0.223 0.777 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.143 0.857 45 H 0.094 0.906 46 H 0.222 0.778 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.889 3.653 20.141 20.672 hybrid contribution -0.444 1.232 -1.552 2.031 sum -3.332 4.885 18.588 19.506 Atomic orbital electron populations 1.21942 0.93156 1.02397 1.02994 1.21787 0.96269 0.95829 0.88795 0.92473 1.21555 0.94143 1.01017 0.97178 1.21928 0.97035 1.01126 0.96190 1.20986 0.98365 0.80350 0.95444 0.90806 1.45814 1.27236 1.07623 1.54201 1.17359 0.83145 0.83975 0.78335 1.90756 1.25598 1.82654 1.47051 1.20401 0.94377 0.93959 1.11016 1.21502 1.00616 0.91548 1.01641 1.21207 0.96906 0.99716 1.06937 1.22743 1.02175 0.83373 1.01922 1.42190 1.19709 1.09359 1.41601 0.73722 1.22314 0.88057 0.99322 0.97799 1.61399 1.06345 1.55919 1.01312 1.21927 1.03374 0.94738 0.88222 1.20882 0.82038 0.88904 0.83960 1.90510 1.46127 1.27416 1.84205 1.42057 1.54259 1.19430 1.08033 1.18962 1.36778 1.01256 0.88005 0.92538 1.26054 0.98343 1.02808 0.94210 1.69803 1.47527 1.38855 1.01677 0.85419 0.78851 0.77531 0.80055 1.18589 1.20376 1.15194 0.90112 0.91701 0.92793 0.92564 0.89188 0.92448 0.89336 0.75540 0.84083 0.81639 0.77653 0.91899 0.92103 0.85735 0.90584 0.77758 0.91349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 8.57 71.98 0.62 -1.62 16 2 C 0.08 1.44 2.45 44.94 0.11 1.55 16 3 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 4 C -0.10 -1.80 5.20 30.65 0.16 -1.64 16 5 C -0.12 -2.59 5.67 30.67 0.17 -2.42 16 6 C 0.15 4.10 2.81 45.04 0.13 4.23 16 7 H 0.07 2.20 7.58 -2.39 -0.02 2.19 16 8 N -0.70 -20.43 4.40 -446.25 -1.96 -22.39 16 9 C 0.58 19.07 7.75 86.45 0.67 19.74 16 10 O -0.58 -22.14 16.55 -4.34 -0.07 -22.21 16 11 C -0.08 -2.47 7.06 40.35 0.28 -2.19 16 12 C -0.13 -3.44 10.65 22.57 0.24 -3.20 16 13 C -0.22 -4.79 10.81 22.01 0.24 -4.55 16 14 C 0.03 0.68 11.89 83.48 0.99 1.67 16 15 N -0.53 -12.64 5.99 -183.62 -1.10 -13.74 16 16 H 0.42 9.25 8.19 -92.71 -0.76 8.49 16 17 C 0.05 1.46 4.71 86.31 0.41 1.86 16 18 N -0.52 -13.07 3.60 -875.42 -3.15 -16.22 16 19 C 0.05 1.29 5.26 85.56 0.45 1.74 16 20 C 0.45 18.55 7.47 87.66 0.65 19.20 16 21 O -0.60 -29.59 14.42 -3.07 -0.04 -29.63 16 22 N -0.60 -26.25 5.09 -306.98 -1.56 -27.81 16 23 C -0.32 -17.98 10.16 84.04 0.85 -17.13 16 24 H 0.06 3.79 7.39 -2.91 -0.02 3.77 16 25 C -0.02 -0.86 5.50 84.93 0.47 -0.39 16 26 N -0.94 -55.57 13.96 21.66 0.30 -55.26 16 27 Si 0.96 37.61 27.74 68.60 1.90 39.51 16 28 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 29 H -0.28 -10.96 7.11 99.48 0.71 -10.26 16 30 H -0.23 -7.37 6.52 99.48 0.65 -6.72 16 31 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.06 0.90 6.44 -2.39 -0.02 0.89 16 33 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.06 1.17 7.72 -2.39 -0.02 1.15 16 35 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 36 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.41 12.05 7.30 -92.71 -0.68 11.37 16 39 H 0.14 3.80 8.06 -2.91 -0.02 3.78 16 40 H 0.17 2.60 8.06 -2.91 -0.02 2.58 16 41 H 0.21 2.36 8.06 -2.91 -0.02 2.33 16 42 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.06 2.19 6.35 -2.39 -0.02 2.18 16 44 H 0.12 2.71 5.55 -2.39 -0.01 2.69 16 45 H 0.08 1.72 8.05 -2.39 -0.02 1.70 16 46 H 0.39 14.16 5.76 -92.71 -0.53 13.62 16 47 H 0.28 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -77.49 378.23 -0.25 -77.74 By element: Atomic # 1 Polarization: 54.17 SS G_CDS: -1.01 Total: 53.16 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: 6.45 Total: 16.86 kcal Atomic # 7 Polarization: -127.95 SS G_CDS: -7.47 Total: -135.43 kcal Atomic # 8 Polarization: -51.73 SS G_CDS: -0.12 Total: -51.84 kcal Atomic # 14 Polarization: 37.61 SS G_CDS: 1.90 Total: 39.51 kcal Total: -77.49 -0.25 -77.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131784690.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.390 kcal (2) G-P(sol) polarization free energy of solvation -77.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds