Wall clock time and date at job start Tue Mar 31 2020 19:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.46616 * 2 1 4 4 C 1.53031 * 109.45989 * 119.97337 * 2 1 3 5 5 C 1.53125 * 109.27810 * 179.19091 * 4 2 1 6 6 C 1.53120 * 109.15943 * 302.34920 * 5 4 2 7 7 H 1.09004 * 109.49987 * 297.70613 * 6 5 4 8 8 N 1.46501 * 109.50120 * 177.63460 * 6 5 4 9 9 C 1.34779 * 120.00174 * 84.99722 * 8 6 5 10 10 O 1.21692 * 120.00034 * 359.97438 * 9 8 6 11 11 C 1.46673 * 119.99696 * 180.02562 * 9 8 6 12 12 C 1.37878 * 126.23133 * 179.68854 * 11 9 8 13 13 C 1.39833 * 107.08484 * 179.84022 * 12 11 9 14 14 C 1.35450 * 107.86695 * 0.42414 * 13 12 11 15 15 N 1.35536 * 108.87077 * 359.73500 * 14 13 12 16 16 H 0.96994 * 125.67877 * 179.97438 * 15 14 13 17 17 C 1.53031 * 109.28261 * 57.65192 * 6 5 4 18 18 N 1.46848 * 109.45632 * 240.02297 * 2 1 3 19 19 C 1.46898 * 111.00417 * 54.15048 * 18 2 1 20 20 C 1.50699 * 109.47363 * 64.61220 * 19 18 2 21 21 O 1.21296 * 120.00063 * 354.34086 * 20 19 18 22 22 N 1.34778 * 120.00267 * 174.33381 * 20 19 18 23 23 C 1.37101 * 120.00191 * 180.02562 * 22 20 19 24 24 H 1.08000 * 119.99408 * 0.02562 * 23 22 20 25 25 C 1.38949 * 119.99875 * 180.02562 * 23 22 20 26 26 N 1.31407 * 120.00067 * 0.02562 * 25 23 22 27 27 Si 1.86794 * 119.99568 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.47570 * 359.97438 * 27 25 23 29 29 H 1.48506 * 109.47122 * 120.00310 * 27 25 23 30 30 H 1.48505 * 109.47072 * 239.99875 * 27 25 23 31 31 H 1.09000 * 109.47506 * 173.13018 * 1 2 3 32 32 H 1.09002 * 109.46888 * 293.13531 * 1 2 3 33 33 H 1.09003 * 109.47115 * 53.12701 * 1 2 3 34 34 H 1.09002 * 109.50810 * 299.13055 * 4 2 1 35 35 H 1.08998 * 109.50718 * 59.21576 * 4 2 1 36 36 H 1.09007 * 109.51960 * 62.24702 * 5 4 2 37 37 H 1.08993 * 109.52616 * 182.37435 * 5 4 2 38 38 H 0.96995 * 119.99919 * 264.99518 * 8 6 5 39 39 H 1.07999 * 126.45549 * 0.02562 * 12 11 9 40 40 H 1.08000 * 126.06658 * 180.15643 * 13 12 11 41 41 H 1.08000 * 125.57112 * 179.75644 * 14 13 12 42 42 H 1.09003 * 109.46481 * 180.80931 * 17 6 5 43 43 H 1.08992 * 109.46753 * 60.83533 * 17 6 5 44 44 H 1.09003 * 109.46970 * 304.61768 * 19 18 2 45 45 H 1.08996 * 109.47638 * 184.61554 * 19 18 2 46 46 H 0.96998 * 119.99696 * 0.02562 * 22 20 19 47 47 H 0.96999 * 119.99974 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0398 -0.7209 1.2499 5 6 3.5709 -0.7361 1.2356 6 6 4.0547 -1.4189 -0.0468 7 1 3.7123 -2.4537 -0.0594 8 7 5.5185 -1.3874 -0.0953 9 6 6.2342 -2.3434 0.5296 10 8 5.6645 -3.2324 1.1345 11 6 7.6998 -2.3114 0.4814 12 6 8.5546 -3.2151 1.0762 13 6 9.8578 -2.8085 0.7734 14 6 9.7784 -1.6831 0.0238 15 7 8.4726 -1.3706 -0.1608 16 1 8.1382 -0.6102 -0.6616 17 6 3.4864 -0.6778 -1.2591 18 7 2.0191 -0.6918 -1.1994 19 6 1.4372 -0.1107 -2.4166 20 6 1.9092 1.3123 -2.5691 21 8 2.5726 1.8283 -1.6945 22 7 1.5944 2.0117 -3.6774 23 6 2.0243 3.3061 -3.8164 24 1 2.6155 3.7652 -3.0379 25 6 1.6992 4.0272 -4.9588 26 7 0.9794 3.4686 -5.9057 27 14 2.2843 5.7910 -5.1478 28 1 3.0702 6.1830 -3.9503 29 1 3.1371 5.9027 -6.3585 30 1 1.1102 6.6900 -5.2848 31 1 -0.3634 -1.0203 -0.1229 32 1 -0.3633 0.4038 0.9450 33 1 -0.3633 0.6167 -0.8221 34 1 1.6895 -0.1981 2.1400 35 1 1.6653 -1.7444 1.2580 36 1 3.9457 0.2870 1.2671 37 1 3.9379 -1.2854 2.1025 38 1 5.9727 -0.6786 -0.5771 39 1 8.2710 -4.0766 1.6626 40 1 10.7665 -3.3016 1.0858 41 1 10.6185 -1.1260 -0.3639 42 1 3.8173 -1.1701 -2.1736 43 1 3.8402 0.3531 -1.2533 44 1 0.3498 -0.1268 -2.3429 45 1 1.7513 -0.6925 -3.2831 46 1 1.0637 1.5991 -4.3767 47 1 0.7528 3.9719 -6.7034 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131784691.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:01 Heat of formation + Delta-G solvation = -23.565658 kcal Electronic energy + Delta-G solvation = -29183.088105 eV Core-core repulsion = 25173.331149 eV Total energy + Delta-G solvation = -4009.756956 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.44420 -40.02767 -38.94506 -37.35589 -34.98801 -34.02476 -32.59763 -31.63551 -31.36918 -30.96755 -29.27934 -27.62962 -26.22039 -24.64114 -23.06375 -22.80360 -21.27335 -20.56805 -20.26255 -19.99254 -19.26189 -18.78589 -17.85771 -16.28545 -16.14797 -15.90995 -15.37056 -15.12382 -14.83003 -14.64147 -14.39293 -14.13420 -14.00359 -13.86540 -13.72958 -13.61634 -13.20074 -12.95463 -12.77644 -12.52069 -12.37844 -12.21248 -11.77084 -11.72305 -11.52333 -11.35092 -11.17452 -10.74177 -10.63505 -10.49517 -10.43586 -10.34307 -10.24281 -9.95085 -9.55727 -9.29300 -9.23968 -9.11330 -8.43727 -8.08696 -7.47993 -6.53989 -3.95694 1.31581 2.55091 2.86605 3.01940 3.05539 3.17742 3.23671 3.31335 3.73620 4.06553 4.29302 4.68792 4.82185 4.87680 5.00682 5.08099 5.12263 5.13201 5.15714 5.25126 5.30019 5.64205 5.65891 5.75976 5.77445 5.83285 5.85481 5.94471 5.99633 6.02851 6.08453 6.13318 6.15539 6.27563 6.33034 6.37296 6.40887 6.45781 6.53656 6.70206 6.78573 7.11393 7.29853 7.42322 7.43405 7.45106 7.92317 8.10638 8.46623 9.04135 9.40465 9.90429 10.62467 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011617 B = 0.002943 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.586328 B = 9511.035893 C =11344.939180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.060 3.940 3 H 0.085 0.915 4 C -0.104 4.104 5 C -0.127 4.127 6 C 0.153 3.847 7 H 0.093 0.907 8 N -0.723 5.723 9 C 0.590 3.410 10 O -0.530 6.530 11 C -0.054 4.054 12 C -0.109 4.109 13 C -0.214 4.214 14 C 0.021 3.979 15 N -0.540 5.540 16 H 0.417 0.583 17 C 0.034 3.966 18 N -0.504 5.504 19 C 0.038 3.962 20 C 0.407 3.593 21 O -0.595 6.595 22 N -0.555 5.555 23 C -0.303 4.303 24 H 0.103 0.897 25 C 0.024 3.976 26 N -0.897 5.897 27 Si 0.929 3.071 28 H -0.268 1.268 29 H -0.281 1.281 30 H -0.280 1.280 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.393 0.607 39 H 0.147 0.853 40 H 0.143 0.857 41 H 0.171 0.829 42 H 0.068 0.932 43 H 0.080 0.920 44 H 0.096 0.904 45 H 0.087 0.913 46 H 0.393 0.607 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.032 -9.522 9.138 16.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.047 4.047 3 H 0.103 0.897 4 C -0.142 4.142 5 C -0.166 4.166 6 C 0.049 3.951 7 H 0.111 0.889 8 N -0.373 5.373 9 C 0.377 3.623 10 O -0.406 6.406 11 C -0.167 4.167 12 C -0.136 4.136 13 C -0.238 4.238 14 C -0.115 4.115 15 N -0.136 5.136 16 H 0.255 0.745 17 C -0.095 4.095 18 N -0.227 5.227 19 C -0.094 4.094 20 C 0.192 3.808 21 O -0.483 6.483 22 N -0.190 5.190 23 C -0.433 4.433 24 H 0.120 0.880 25 C -0.178 4.178 26 N -0.537 5.537 27 Si 0.756 3.244 28 H -0.193 1.193 29 H -0.207 1.207 30 H -0.206 1.206 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.227 0.773 39 H 0.165 0.835 40 H 0.160 0.840 41 H 0.188 0.812 42 H 0.086 0.914 43 H 0.098 0.902 44 H 0.114 0.886 45 H 0.105 0.895 46 H 0.226 0.774 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.696 -10.124 9.915 17.170 hybrid contribution 0.341 2.302 -1.340 2.686 sum 10.037 -7.822 8.576 15.345 Atomic orbital electron populations 1.21865 0.95071 1.01738 1.01529 1.21919 0.94801 0.98924 0.89105 0.89707 1.21538 0.94367 1.01135 0.97204 1.21923 0.96459 1.00747 0.97443 1.20957 0.77391 1.01435 0.95293 0.88853 1.45940 1.07858 1.28744 1.54776 1.17042 0.84576 0.81731 0.78970 1.90835 1.70686 1.35995 1.43118 1.20530 0.90999 0.96766 1.08433 1.21330 0.91665 0.99439 1.01171 1.20906 0.97705 0.99211 1.06023 1.22057 0.85743 0.99838 1.03864 1.42091 1.06532 1.23172 1.41764 0.74526 1.22426 0.89071 1.01577 0.96376 1.62349 1.06090 1.52571 1.01702 1.22122 1.01049 0.92644 0.93565 1.21084 0.86348 0.89052 0.84281 1.90390 1.44363 1.71625 1.41928 1.42076 1.46638 1.12881 1.17445 1.19740 1.31132 0.88186 1.04194 0.87954 1.25293 0.96734 1.00409 0.95363 1.69613 1.37450 1.38085 1.08579 0.85818 0.78497 0.81739 0.78393 1.19278 1.20669 1.20630 0.92306 0.92616 0.92581 0.91621 0.91483 0.91866 0.91778 0.77340 0.83535 0.83958 0.81225 0.91391 0.90247 0.88602 0.89499 0.77362 0.91741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.52 37.16 0.32 -1.72 16 2 C 0.06 0.95 2.05 -67.72 -0.14 0.81 16 3 H 0.09 1.63 5.69 -51.93 -0.30 1.34 16 4 C -0.10 -1.42 5.37 -26.65 -0.14 -1.57 16 5 C -0.13 -1.78 5.58 -26.60 -0.15 -1.93 16 6 C 0.15 2.16 2.61 -67.85 -0.18 1.98 16 7 H 0.09 1.45 7.58 -51.93 -0.39 1.06 16 8 N -0.72 -8.95 5.08 -55.04 -0.28 -9.23 16 9 C 0.59 8.12 7.75 -12.85 -0.10 8.02 16 10 O -0.53 -9.05 16.55 5.20 0.09 -8.97 16 11 C -0.05 -0.63 7.06 -81.98 -0.58 -1.21 16 12 C -0.11 -1.23 10.65 -39.12 -0.42 -1.65 16 13 C -0.21 -1.92 10.81 -39.98 -0.43 -2.35 16 14 C 0.02 0.16 11.89 -16.91 -0.20 -0.04 16 15 N -0.54 -4.61 5.99 -9.39 -0.06 -4.67 16 16 H 0.42 2.59 8.19 -40.82 -0.33 2.26 16 17 C 0.03 0.53 4.47 -3.83 -0.02 0.51 16 18 N -0.50 -7.99 4.69 -228.13 -1.07 -9.06 16 19 C 0.04 0.64 5.45 -4.98 -0.03 0.61 16 20 C 0.41 8.76 7.18 -10.99 -0.08 8.68 16 21 O -0.60 -14.21 11.22 5.54 0.06 -14.15 16 22 N -0.56 -13.25 5.29 -10.96 -0.06 -13.31 16 23 C -0.30 -8.01 9.68 -14.93 -0.14 -8.16 16 24 H 0.10 2.85 7.16 -52.49 -0.38 2.48 16 25 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 26 N -0.90 -23.57 13.05 55.50 0.72 -22.84 16 27 Si 0.93 20.24 29.55 -169.99 -5.02 15.22 16 28 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 29 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 30 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.86 6.65 -51.93 -0.35 0.51 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 0.93 8.14 -51.92 -0.42 0.50 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.39 4.05 7.73 -40.82 -0.32 3.74 16 39 H 0.15 1.61 8.06 -52.49 -0.42 1.18 16 40 H 0.14 0.97 8.06 -52.49 -0.42 0.54 16 41 H 0.17 0.73 8.06 -52.49 -0.42 0.30 16 42 H 0.07 1.02 8.12 -51.93 -0.42 0.60 16 43 H 0.08 1.44 5.68 -51.93 -0.29 1.15 16 44 H 0.10 1.50 6.10 -51.93 -0.32 1.18 16 45 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 46 H 0.39 9.10 7.90 -40.82 -0.32 8.77 16 47 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 377.59 15.07 5.69 5.69 Total: -1.00 -31.49 377.59 -9.09 -40.57 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: -6.78 Total: 18.23 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -2.38 Total: 2.53 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: -0.74 Total: -59.12 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: 0.15 Total: -23.12 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.49 -9.09 -40.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131784691.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.006 kcal (2) G-P(sol) polarization free energy of solvation -31.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds