Wall clock time and date at job start Tue Mar 31 2020 19:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.46616 * 2 1 4 4 C 1.53031 * 109.45989 * 119.97337 * 2 1 3 5 5 C 1.53125 * 109.27810 * 179.19091 * 4 2 1 6 6 C 1.53120 * 109.15943 * 302.34920 * 5 4 2 7 7 H 1.09004 * 109.49987 * 297.70613 * 6 5 4 8 8 N 1.46501 * 109.50120 * 177.63460 * 6 5 4 9 9 C 1.34779 * 120.00174 * 84.99722 * 8 6 5 10 10 O 1.21692 * 120.00034 * 359.97438 * 9 8 6 11 11 C 1.46673 * 119.99696 * 180.02562 * 9 8 6 12 12 C 1.37878 * 126.23133 * 179.68854 * 11 9 8 13 13 C 1.39833 * 107.08484 * 179.84022 * 12 11 9 14 14 C 1.35450 * 107.86695 * 0.42414 * 13 12 11 15 15 N 1.35536 * 108.87077 * 359.73500 * 14 13 12 16 16 H 0.96994 * 125.67877 * 179.97438 * 15 14 13 17 17 C 1.53031 * 109.28261 * 57.65192 * 6 5 4 18 18 N 1.46848 * 109.45632 * 240.02297 * 2 1 3 19 19 C 1.46898 * 111.00417 * 54.15048 * 18 2 1 20 20 C 1.50699 * 109.47363 * 64.61220 * 19 18 2 21 21 O 1.21296 * 120.00063 * 354.34086 * 20 19 18 22 22 N 1.34778 * 120.00267 * 174.33381 * 20 19 18 23 23 C 1.37101 * 120.00191 * 180.02562 * 22 20 19 24 24 H 1.08000 * 119.99408 * 0.02562 * 23 22 20 25 25 C 1.38949 * 119.99875 * 180.02562 * 23 22 20 26 26 N 1.31407 * 120.00067 * 0.02562 * 25 23 22 27 27 Si 1.86794 * 119.99568 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.47570 * 359.97438 * 27 25 23 29 29 H 1.48506 * 109.47122 * 120.00310 * 27 25 23 30 30 H 1.48505 * 109.47072 * 239.99875 * 27 25 23 31 31 H 1.09000 * 109.47506 * 173.13018 * 1 2 3 32 32 H 1.09002 * 109.46888 * 293.13531 * 1 2 3 33 33 H 1.09003 * 109.47115 * 53.12701 * 1 2 3 34 34 H 1.09002 * 109.50810 * 299.13055 * 4 2 1 35 35 H 1.08998 * 109.50718 * 59.21576 * 4 2 1 36 36 H 1.09007 * 109.51960 * 62.24702 * 5 4 2 37 37 H 1.08993 * 109.52616 * 182.37435 * 5 4 2 38 38 H 0.96995 * 119.99919 * 264.99518 * 8 6 5 39 39 H 1.07999 * 126.45549 * 0.02562 * 12 11 9 40 40 H 1.08000 * 126.06658 * 180.15643 * 13 12 11 41 41 H 1.08000 * 125.57112 * 179.75644 * 14 13 12 42 42 H 1.09003 * 109.46481 * 180.80931 * 17 6 5 43 43 H 1.08992 * 109.46753 * 60.83533 * 17 6 5 44 44 H 1.09003 * 109.46970 * 304.61768 * 19 18 2 45 45 H 1.08996 * 109.47638 * 184.61554 * 19 18 2 46 46 H 0.96998 * 119.99696 * 0.02562 * 22 20 19 47 47 H 0.96999 * 119.99974 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0398 -0.7209 1.2499 5 6 3.5709 -0.7361 1.2356 6 6 4.0547 -1.4189 -0.0468 7 1 3.7123 -2.4537 -0.0594 8 7 5.5185 -1.3874 -0.0953 9 6 6.2342 -2.3434 0.5296 10 8 5.6645 -3.2324 1.1345 11 6 7.6998 -2.3114 0.4814 12 6 8.5546 -3.2151 1.0762 13 6 9.8578 -2.8085 0.7734 14 6 9.7784 -1.6831 0.0238 15 7 8.4726 -1.3706 -0.1608 16 1 8.1382 -0.6102 -0.6616 17 6 3.4864 -0.6778 -1.2591 18 7 2.0191 -0.6918 -1.1994 19 6 1.4372 -0.1107 -2.4166 20 6 1.9092 1.3123 -2.5691 21 8 2.5726 1.8283 -1.6945 22 7 1.5944 2.0117 -3.6774 23 6 2.0243 3.3061 -3.8164 24 1 2.6155 3.7652 -3.0379 25 6 1.6992 4.0272 -4.9588 26 7 0.9794 3.4686 -5.9057 27 14 2.2843 5.7910 -5.1478 28 1 3.0702 6.1830 -3.9503 29 1 3.1371 5.9027 -6.3585 30 1 1.1102 6.6900 -5.2848 31 1 -0.3634 -1.0203 -0.1229 32 1 -0.3633 0.4038 0.9450 33 1 -0.3633 0.6167 -0.8221 34 1 1.6895 -0.1981 2.1400 35 1 1.6653 -1.7444 1.2580 36 1 3.9457 0.2870 1.2671 37 1 3.9379 -1.2854 2.1025 38 1 5.9727 -0.6786 -0.5771 39 1 8.2710 -4.0766 1.6626 40 1 10.7665 -3.3016 1.0858 41 1 10.6185 -1.1260 -0.3639 42 1 3.8173 -1.1701 -2.1736 43 1 3.8402 0.3531 -1.2533 44 1 0.3498 -0.1268 -2.3429 45 1 1.7513 -0.6925 -3.2831 46 1 1.0637 1.5991 -4.3767 47 1 0.7528 3.9719 -6.7034 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131784691.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:00 Heat of formation + Delta-G solvation = -47.096489 kcal Electronic energy + Delta-G solvation = -29184.108478 eV Core-core repulsion = 25173.331149 eV Total energy + Delta-G solvation = -4010.777329 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.24856 -41.35909 -40.20334 -38.85670 -36.30602 -35.77741 -33.91101 -33.26748 -32.66427 -31.83417 -30.12315 -29.09298 -27.47885 -26.35670 -24.21876 -23.94983 -22.38585 -21.49236 -21.32300 -21.05868 -20.75627 -19.98789 -19.60842 -17.73925 -17.44239 -17.04019 -16.60990 -16.48660 -16.27562 -15.97051 -15.80805 -15.56715 -15.18552 -15.07738 -14.82901 -14.57037 -14.53420 -14.26277 -13.86245 -13.56165 -13.52522 -13.40066 -13.18316 -13.04061 -12.92424 -12.79779 -12.58365 -12.43387 -12.15265 -11.99044 -11.87089 -11.79675 -11.44463 -11.32875 -11.12535 -10.95847 -10.25179 -10.00147 -9.97013 -9.20247 -9.02067 -8.47536 -5.97251 0.44125 1.33071 1.39668 1.52525 1.83590 1.92437 2.00182 2.22046 2.26827 2.33889 3.01164 3.18818 3.24076 3.67588 3.80736 3.91832 3.97214 4.05567 4.31697 4.37625 4.40594 4.41819 4.43342 4.48706 4.52606 4.58361 4.62901 4.74366 4.80847 4.92349 4.99918 5.02164 5.09854 5.13765 5.15872 5.24423 5.25380 5.32640 5.38536 5.52484 5.73633 5.89601 5.92830 6.04197 6.12299 6.38721 6.56120 6.57281 7.05997 7.10276 7.54119 8.07954 8.68010 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011617 B = 0.002943 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.586328 B = 9511.035893 C =11344.939180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.060 3.940 3 H 0.048 0.952 4 C -0.098 4.098 5 C -0.122 4.122 6 C 0.163 3.837 7 H 0.083 0.917 8 N -0.715 5.715 9 C 0.590 3.410 10 O -0.571 6.571 11 C -0.085 4.085 12 C -0.123 4.123 13 C -0.228 4.228 14 C 0.043 3.957 15 N -0.532 5.532 16 H 0.428 0.572 17 C 0.042 3.958 18 N -0.496 5.496 19 C 0.046 3.954 20 C 0.412 3.588 21 O -0.618 6.618 22 N -0.570 5.570 23 C -0.329 4.329 24 H 0.079 0.921 25 C -0.013 4.013 26 N -0.919 5.919 27 Si 0.989 3.011 28 H -0.273 1.273 29 H -0.272 1.272 30 H -0.274 1.274 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.040 0.960 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.053 0.947 37 H 0.062 0.938 38 H 0.404 0.596 39 H 0.139 0.861 40 H 0.164 0.836 41 H 0.212 0.788 42 H 0.073 0.927 43 H 0.053 0.947 44 H 0.114 0.886 45 H 0.107 0.893 46 H 0.395 0.605 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.070 -9.549 8.992 17.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.048 4.048 3 H 0.066 0.934 4 C -0.136 4.136 5 C -0.161 4.161 6 C 0.058 3.942 7 H 0.101 0.899 8 N -0.365 5.365 9 C 0.379 3.621 10 O -0.451 6.451 11 C -0.198 4.198 12 C -0.151 4.151 13 C -0.251 4.251 14 C -0.094 4.094 15 N -0.129 5.129 16 H 0.267 0.733 17 C -0.087 4.087 18 N -0.219 5.219 19 C -0.086 4.086 20 C 0.199 3.801 21 O -0.506 6.506 22 N -0.206 5.206 23 C -0.459 4.459 24 H 0.097 0.903 25 C -0.213 4.213 26 N -0.560 5.560 27 Si 0.814 3.186 28 H -0.197 1.197 29 H -0.197 1.197 30 H -0.199 1.199 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.059 0.941 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.239 0.761 39 H 0.157 0.843 40 H 0.181 0.819 41 H 0.228 0.772 42 H 0.092 0.908 43 H 0.071 0.929 44 H 0.132 0.868 45 H 0.125 0.875 46 H 0.229 0.771 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.733 -10.139 9.757 17.697 hybrid contribution 0.116 2.264 -1.221 2.575 sum 10.849 -7.874 8.536 15.893 Atomic orbital electron populations 1.21835 0.93581 1.02533 1.01798 1.21898 0.96029 0.97031 0.89799 0.93423 1.21513 0.93851 1.01509 0.96749 1.21864 0.96928 0.99984 0.97279 1.20746 0.78336 1.00389 0.94690 0.89902 1.45812 1.07200 1.28881 1.54631 1.17325 0.85534 0.81054 0.78158 1.90799 1.71694 1.37558 1.45019 1.20225 0.89990 0.98647 1.10913 1.21536 0.93064 0.99326 1.01128 1.21228 0.97387 0.99972 1.06510 1.22762 0.86032 0.98975 1.01627 1.42113 1.06707 1.22844 1.41200 0.73280 1.22330 0.88915 1.00141 0.97333 1.62443 1.06229 1.51721 1.01501 1.22201 1.02121 0.89436 0.94815 1.22017 0.84674 0.90501 0.82896 1.90402 1.44933 1.72755 1.42486 1.42145 1.47620 1.12497 1.18387 1.19659 1.32161 0.89721 1.04314 0.90273 1.26011 0.96642 1.03832 0.94769 1.69674 1.38043 1.39383 1.08923 0.84918 0.78170 0.77333 0.78213 1.19749 1.19684 1.19891 0.90662 0.91140 0.94080 0.90149 0.90588 0.92850 0.91910 0.76112 0.84339 0.81871 0.77176 0.90807 0.92861 0.86786 0.87544 0.77123 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 8.52 71.98 0.61 -3.12 16 2 C 0.06 1.86 2.05 44.94 0.09 1.95 16 3 H 0.05 1.86 5.69 -2.39 -0.01 1.85 16 4 C -0.10 -2.58 5.37 30.65 0.16 -2.41 16 5 C -0.12 -3.41 5.58 30.68 0.17 -3.24 16 6 C 0.16 4.60 2.61 45.04 0.12 4.72 16 7 H 0.08 2.57 7.58 -2.38 -0.02 2.56 16 8 N -0.72 -17.80 5.08 -446.26 -2.27 -20.06 16 9 C 0.59 16.49 7.75 86.45 0.67 17.16 16 10 O -0.57 -20.08 16.55 -4.32 -0.07 -20.15 16 11 C -0.08 -1.95 7.06 40.35 0.28 -1.67 16 12 C -0.12 -2.74 10.65 22.57 0.24 -2.50 16 13 C -0.23 -3.61 10.81 22.01 0.24 -3.37 16 14 C 0.04 0.53 11.89 83.48 0.99 1.52 16 15 N -0.53 -8.16 5.99 -183.62 -1.10 -9.26 16 16 H 0.43 4.55 8.19 -92.71 -0.76 3.79 16 17 C 0.04 1.28 4.47 86.32 0.39 1.67 16 18 N -0.50 -15.35 4.69 -875.67 -4.11 -19.46 16 19 C 0.05 1.51 5.45 85.56 0.47 1.97 16 20 C 0.41 17.94 7.18 87.66 0.63 18.57 16 21 O -0.62 -30.22 11.22 -3.08 -0.03 -30.26 16 22 N -0.57 -27.63 5.29 -306.98 -1.62 -29.26 16 23 C -0.33 -17.76 9.68 84.04 0.81 -16.95 16 24 H 0.08 4.56 7.16 -2.91 -0.02 4.54 16 25 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 26 N -0.92 -48.28 13.05 21.66 0.28 -48.00 16 27 Si 0.99 41.49 29.55 68.60 2.03 43.52 16 28 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 29 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 30 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 31 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.04 1.21 6.65 -2.39 -0.02 1.19 16 34 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 37 H 0.06 1.78 8.14 -2.39 -0.02 1.77 16 38 H 0.40 8.27 7.73 -92.71 -0.72 7.56 16 39 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 40 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 41 H 0.21 0.79 8.06 -2.91 -0.02 0.77 16 42 H 0.07 2.17 8.12 -2.39 -0.02 2.15 16 43 H 0.05 1.97 5.68 -2.39 -0.01 1.95 16 44 H 0.11 3.39 6.10 -2.39 -0.01 3.38 16 45 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 46 H 0.40 18.49 7.90 -92.71 -0.73 17.75 16 47 H 0.28 13.65 8.31 -92.71 -0.77 12.88 16 Total: -1.00 -69.62 377.59 -1.73 -71.35 By element: Atomic # 1 Polarization: 48.65 SS G_CDS: -1.18 Total: 47.47 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: 6.35 Total: 14.12 kcal Atomic # 7 Polarization: -117.23 SS G_CDS: -8.82 Total: -126.04 kcal Atomic # 8 Polarization: -50.30 SS G_CDS: -0.11 Total: -50.41 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -69.62 -1.73 -71.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131784691.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.251 kcal (2) G-P(sol) polarization free energy of solvation -69.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds