Wall clock time and date at job start Tue Mar 31 2020 19:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.45718 * 2 1 4 4 C 1.53034 * 109.46445 * 119.97833 * 2 1 3 5 5 C 1.53117 * 109.28020 * 179.19567 * 4 2 1 6 6 C 1.53125 * 109.15988 * 302.34100 * 5 4 2 7 7 H 1.08994 * 109.53441 * 297.69845 * 6 5 4 8 8 N 1.46500 * 109.50026 * 177.59455 * 6 5 4 9 9 C 1.34779 * 119.99731 * 85.20420 * 8 6 5 10 10 O 1.21621 * 120.00156 * 359.97438 * 9 8 6 11 11 C 1.47265 * 119.99591 * 179.97438 * 9 8 6 12 12 C 1.46691 * 126.93781 * 179.97438 * 11 9 8 13 13 C 1.34485 * 106.32934 * 179.97438 * 12 11 9 14 14 N 1.36450 * 108.85763 * 0.02562 * 13 12 11 15 15 H 0.96998 * 124.84589 * 179.97438 * 14 13 12 16 16 C 1.34660 * 110.29822 * 359.74899 * 14 13 12 17 17 C 1.53038 * 109.27633 * 57.65646 * 6 5 4 18 18 N 1.46847 * 109.52221 * 300.82328 * 17 6 5 19 19 C 1.46910 * 111.00094 * 185.84090 * 18 17 6 20 20 C 1.50703 * 109.46716 * 75.56789 * 19 18 17 21 21 O 1.21291 * 120.00458 * 0.02562 * 20 19 18 22 22 N 1.34777 * 119.99242 * 180.02562 * 20 19 18 23 23 C 1.37097 * 119.99685 * 179.73157 * 22 20 19 24 24 H 1.08000 * 120.00114 * 359.97438 * 23 22 20 25 25 C 1.38955 * 120.00082 * 180.02562 * 23 22 20 26 26 N 1.31415 * 119.99883 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 119.99987 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47231 * 59.99743 * 27 25 23 29 29 H 1.48502 * 109.47193 * 179.97438 * 27 25 23 30 30 H 1.48493 * 109.47212 * 299.99439 * 27 25 23 31 31 H 1.08993 * 109.47265 * 172.21256 * 1 2 3 32 32 H 1.08995 * 109.46988 * 292.21644 * 1 2 3 33 33 H 1.09006 * 109.47034 * 52.21274 * 1 2 3 34 34 H 1.08998 * 109.50183 * 59.25183 * 4 2 1 35 35 H 1.08997 * 109.53081 * 299.15299 * 4 2 1 36 36 H 1.09001 * 109.52298 * 182.44047 * 5 4 2 37 37 H 1.09004 * 109.52415 * 62.24723 * 5 4 2 38 38 H 0.96995 * 120.00288 * 265.19127 * 8 6 5 39 39 H 1.07991 * 126.83519 * 0.02562 * 12 11 9 40 40 H 1.08002 * 125.57373 * 179.97438 * 13 12 11 41 41 H 1.07995 * 125.79867 * 180.29448 * 16 14 13 42 42 H 1.09001 * 109.46413 * 180.80385 * 17 6 5 43 43 H 1.09004 * 109.45453 * 60.83014 * 17 6 5 44 44 H 1.09001 * 109.46559 * 315.57255 * 19 18 17 45 45 H 1.08992 * 109.47067 * 195.56977 * 19 18 17 46 46 H 0.96997 * 120.00637 * 0.02562 * 22 20 19 47 47 H 0.96996 * 119.99245 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7210 1.2498 5 6 3.5710 -0.7361 1.2355 6 6 4.0548 -1.4189 -0.0469 7 1 3.7130 -2.4538 -0.0600 8 7 5.5186 -1.3864 -0.0958 9 6 6.2350 -2.3441 0.5256 10 8 5.6663 -3.2349 1.1274 11 6 7.7065 -2.3117 0.4759 12 6 8.6306 -3.2689 1.0937 13 6 9.8709 -2.8473 0.7893 14 7 9.7788 -1.7122 0.0377 15 1 10.5356 -1.2134 -0.3078 16 6 8.4873 -1.3861 -0.1597 17 6 3.4865 -0.6777 -1.2592 18 7 2.0193 -0.6917 -1.1994 19 6 1.4372 -0.1104 -2.4166 20 6 1.5512 -1.0982 -3.5490 21 8 2.0662 -2.1801 -3.3606 22 7 1.0809 -0.7793 -4.7712 23 6 1.1895 -1.6757 -5.8028 24 1 1.6523 -2.6372 -5.6362 25 6 0.7051 -1.3468 -7.0629 26 7 0.1424 -0.1767 -7.2657 27 14 0.8538 -2.5680 -8.4687 28 1 0.1278 -3.8155 -8.1196 29 1 0.2647 -1.9808 -9.6989 30 1 2.2865 -2.8787 -8.7050 31 1 -0.3633 -1.0181 -0.1392 32 1 -0.3633 0.3886 0.9513 33 1 -0.3633 0.6297 -0.8122 34 1 1.6659 -1.7447 1.2574 35 1 1.6895 -0.1989 2.1402 36 1 3.9380 -1.2864 2.1018 37 1 3.9457 0.2870 1.2671 38 1 5.9722 -0.6759 -0.5756 39 1 8.3674 -4.1393 1.6761 40 1 10.7897 -3.3281 1.0912 41 1 8.1291 -0.5372 -0.7230 42 1 3.8175 -1.1698 -2.1737 43 1 3.8404 0.3533 -1.2531 44 1 1.9734 0.8026 -2.6755 45 1 0.3869 0.1222 -2.2417 46 1 0.6694 0.0860 -4.9220 47 1 -0.1960 0.0526 -8.1453 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132053797.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:06 Heat of formation + Delta-G solvation = -20.503877 kcal Electronic energy + Delta-G solvation = -28773.274727 eV Core-core repulsion = 24763.650540 eV Total energy + Delta-G solvation = -4009.624187 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.30029 -39.84692 -38.64868 -37.50961 -34.85303 -33.89072 -32.62149 -31.70044 -31.15418 -30.77857 -29.25670 -27.63195 -26.27344 -24.55501 -23.20184 -22.88370 -21.19825 -20.69814 -19.99667 -19.46367 -19.02636 -18.81418 -17.80054 -16.48277 -16.16130 -15.90657 -15.10830 -15.05836 -14.69243 -14.53405 -14.31294 -14.18141 -14.01383 -13.80669 -13.73131 -13.58450 -13.23214 -13.09691 -12.88085 -12.40856 -12.28031 -12.17922 -11.94937 -11.77988 -11.47399 -11.35635 -11.02041 -10.85659 -10.79332 -10.56016 -10.41244 -10.24136 -10.15242 -9.76107 -9.43082 -9.08255 -8.88144 -8.59685 -8.41824 -7.91395 -7.80900 -6.37271 -3.77600 1.61854 2.26503 2.93638 3.22904 3.23875 3.28121 3.33229 3.61609 3.97519 4.04336 4.28746 4.65608 4.78284 4.85303 4.92798 4.99362 5.01561 5.06254 5.25431 5.28928 5.32604 5.41478 5.53460 5.60283 5.63944 5.69568 5.73200 5.81411 5.82830 5.92797 5.99126 6.08209 6.12264 6.24635 6.30836 6.33143 6.36408 6.47293 6.51779 6.63095 6.66901 7.14763 7.30777 7.44166 7.59448 7.67542 8.11649 8.44194 8.67891 9.23655 9.60494 10.13355 10.80661 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010369 B = 0.002881 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2699.672460 B = 9715.555984 C =11790.572215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.079 3.921 3 H 0.037 0.963 4 C -0.107 4.107 5 C -0.128 4.128 6 C 0.152 3.848 7 H 0.101 0.899 8 N -0.724 5.724 9 C 0.590 3.410 10 O -0.542 6.542 11 C -0.225 4.225 12 C -0.141 4.141 13 C -0.025 4.025 14 N -0.552 5.552 15 H 0.416 0.584 16 C 0.044 3.956 17 C 0.057 3.943 18 N -0.505 5.505 19 C 0.041 3.959 20 C 0.445 3.555 21 O -0.573 6.573 22 N -0.568 5.568 23 C -0.296 4.296 24 H 0.102 0.898 25 C 0.021 3.979 26 N -0.905 5.905 27 Si 0.929 3.071 28 H -0.274 1.274 29 H -0.285 1.285 30 H -0.274 1.274 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.057 0.943 38 H 0.393 0.607 39 H 0.148 0.852 40 H 0.169 0.831 41 H 0.171 0.829 42 H 0.095 0.905 43 H 0.026 0.974 44 H 0.048 0.952 45 H 0.096 0.904 46 H 0.391 0.609 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.681 5.780 16.177 22.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 H 0.054 0.946 4 C -0.145 4.145 5 C -0.167 4.167 6 C 0.048 3.952 7 H 0.119 0.881 8 N -0.374 5.374 9 C 0.378 3.622 10 O -0.420 6.420 11 C -0.236 4.236 12 C -0.166 4.166 13 C -0.152 4.152 14 N -0.147 5.147 15 H 0.253 0.747 16 C -0.092 4.092 17 C -0.071 4.071 18 N -0.230 5.230 19 C -0.090 4.090 20 C 0.230 3.770 21 O -0.456 6.456 22 N -0.206 5.206 23 C -0.426 4.426 24 H 0.120 0.880 25 C -0.180 4.180 26 N -0.546 5.546 27 Si 0.756 3.244 28 H -0.199 1.199 29 H -0.211 1.211 30 H -0.200 1.200 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.227 0.773 39 H 0.165 0.835 40 H 0.187 0.813 41 H 0.189 0.811 42 H 0.113 0.887 43 H 0.044 0.956 44 H 0.066 0.934 45 H 0.114 0.886 46 H 0.224 0.776 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 14.485 4.026 16.558 22.365 hybrid contribution 0.624 1.515 -1.448 2.187 sum 15.109 5.542 15.110 22.075 Atomic orbital electron populations 1.21952 0.94313 1.03175 1.01331 1.21678 0.95557 0.95059 0.90606 0.94561 1.21566 0.94684 1.01994 0.96297 1.21970 0.96037 1.00276 0.98399 1.20909 0.78103 1.02246 0.93964 0.88122 1.45813 1.07113 1.29011 1.55470 1.17373 0.85593 0.81025 0.78215 1.90768 1.72057 1.35810 1.43363 1.20544 0.92538 1.00805 1.09670 1.21984 0.90502 1.00536 1.03539 1.21808 0.99626 0.91346 1.02468 1.41592 1.07561 1.23018 1.42518 0.74728 1.21951 0.83461 1.00993 1.02805 1.22252 0.87933 0.97684 0.99254 1.61332 1.06063 1.54829 1.00758 1.21982 1.01070 0.95686 0.90304 1.19809 0.84685 0.88976 0.83563 1.90531 1.47943 1.24207 1.82903 1.41861 1.53259 1.17730 1.07711 1.19641 1.36491 0.98892 0.87571 0.88040 1.25231 0.96931 0.97069 0.98754 1.69606 1.40037 1.20825 1.24159 0.85942 0.78655 0.80082 0.79690 1.19906 1.21052 1.19996 0.91201 0.92295 0.92353 0.90557 0.91432 0.91352 0.92452 0.77320 0.83458 0.81337 0.81141 0.88653 0.95564 0.93438 0.88595 0.77614 0.91937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.59 37.16 0.32 -1.49 16 2 C 0.08 1.04 2.44 -67.72 -0.17 0.87 16 3 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 4 C -0.11 -1.31 5.37 -26.65 -0.14 -1.45 16 5 C -0.13 -1.62 5.58 -26.61 -0.15 -1.77 16 6 C 0.15 2.24 2.62 -67.85 -0.18 2.07 16 7 H 0.10 1.86 7.58 -51.93 -0.39 1.47 16 8 N -0.72 -9.26 5.07 -54.85 -0.28 -9.54 16 9 C 0.59 8.77 7.78 -12.59 -0.10 8.67 16 10 O -0.54 -10.26 16.63 5.26 0.09 -10.17 16 11 C -0.22 -2.70 6.29 -103.35 -0.65 -3.35 16 12 C -0.14 -1.55 10.97 -37.50 -0.41 -1.97 16 13 C -0.02 -0.19 11.89 -16.82 -0.20 -0.39 16 14 N -0.55 -3.44 5.90 -12.85 -0.08 -3.51 16 15 H 0.42 1.11 8.96 -40.82 -0.37 0.75 16 16 C 0.04 0.36 11.40 -16.84 -0.19 0.17 16 17 C 0.06 0.89 4.58 -3.83 -0.02 0.88 16 18 N -0.50 -8.36 4.05 -228.11 -0.92 -9.28 16 19 C 0.04 0.72 5.31 -4.97 -0.03 0.69 16 20 C 0.44 10.49 7.49 -10.98 -0.08 10.41 16 21 O -0.57 -15.61 14.74 5.55 0.08 -15.53 16 22 N -0.57 -14.40 5.29 -10.96 -0.06 -14.46 16 23 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 24 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 25 C 0.02 0.57 5.50 -17.46 -0.10 0.48 16 26 N -0.90 -24.68 13.05 55.50 0.72 -23.96 16 27 Si 0.93 21.27 29.55 -169.99 -5.02 16.25 16 28 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 29 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 30 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 33 H 0.06 0.69 6.38 -51.93 -0.33 0.36 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.39 3.81 7.55 -40.82 -0.31 3.51 16 39 H 0.15 1.62 8.06 -52.49 -0.42 1.20 16 40 H 0.17 0.73 8.06 -52.49 -0.42 0.31 16 41 H 0.17 0.87 7.45 -52.49 -0.39 0.47 16 42 H 0.10 1.80 6.70 -51.93 -0.35 1.45 16 43 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.05 0.77 8.00 -51.93 -0.42 0.35 16 45 H 0.10 1.55 5.42 -51.93 -0.28 1.27 16 46 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 47 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 383.74 15.07 5.78 5.78 Total: -1.00 -36.08 383.74 -8.81 -44.90 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: -6.90 Total: 14.15 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: -2.23 Total: 5.37 kcal Atomic # 7 Polarization: -60.14 SS G_CDS: -0.61 Total: -60.75 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: 0.17 Total: -25.70 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.08 -8.81 -44.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132053797.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.392 kcal (2) G-P(sol) polarization free energy of solvation -36.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds