Wall clock time and date at job start Tue Mar 31 2020 19:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.45718 * 2 1 4 4 C 1.53034 * 109.46445 * 119.97833 * 2 1 3 5 5 C 1.53117 * 109.28020 * 179.19567 * 4 2 1 6 6 C 1.53125 * 109.15988 * 302.34100 * 5 4 2 7 7 H 1.08994 * 109.53441 * 297.69845 * 6 5 4 8 8 N 1.46500 * 109.50026 * 177.59455 * 6 5 4 9 9 C 1.34779 * 119.99731 * 85.20420 * 8 6 5 10 10 O 1.21621 * 120.00156 * 359.97438 * 9 8 6 11 11 C 1.47265 * 119.99591 * 179.97438 * 9 8 6 12 12 C 1.46691 * 126.93781 * 179.97438 * 11 9 8 13 13 C 1.34485 * 106.32934 * 179.97438 * 12 11 9 14 14 N 1.36450 * 108.85763 * 0.02562 * 13 12 11 15 15 H 0.96998 * 124.84589 * 179.97438 * 14 13 12 16 16 C 1.34660 * 110.29822 * 359.74899 * 14 13 12 17 17 C 1.53038 * 109.27633 * 57.65646 * 6 5 4 18 18 N 1.46847 * 109.52221 * 300.82328 * 17 6 5 19 19 C 1.46910 * 111.00094 * 185.84090 * 18 17 6 20 20 C 1.50703 * 109.46716 * 75.56789 * 19 18 17 21 21 O 1.21291 * 120.00458 * 0.02562 * 20 19 18 22 22 N 1.34777 * 119.99242 * 180.02562 * 20 19 18 23 23 C 1.37097 * 119.99685 * 179.73157 * 22 20 19 24 24 H 1.08000 * 120.00114 * 359.97438 * 23 22 20 25 25 C 1.38955 * 120.00082 * 180.02562 * 23 22 20 26 26 N 1.31415 * 119.99883 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 119.99987 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47231 * 59.99743 * 27 25 23 29 29 H 1.48502 * 109.47193 * 179.97438 * 27 25 23 30 30 H 1.48493 * 109.47212 * 299.99439 * 27 25 23 31 31 H 1.08993 * 109.47265 * 172.21256 * 1 2 3 32 32 H 1.08995 * 109.46988 * 292.21644 * 1 2 3 33 33 H 1.09006 * 109.47034 * 52.21274 * 1 2 3 34 34 H 1.08998 * 109.50183 * 59.25183 * 4 2 1 35 35 H 1.08997 * 109.53081 * 299.15299 * 4 2 1 36 36 H 1.09001 * 109.52298 * 182.44047 * 5 4 2 37 37 H 1.09004 * 109.52415 * 62.24723 * 5 4 2 38 38 H 0.96995 * 120.00288 * 265.19127 * 8 6 5 39 39 H 1.07991 * 126.83519 * 0.02562 * 12 11 9 40 40 H 1.08002 * 125.57373 * 179.97438 * 13 12 11 41 41 H 1.07995 * 125.79867 * 180.29448 * 16 14 13 42 42 H 1.09001 * 109.46413 * 180.80385 * 17 6 5 43 43 H 1.09004 * 109.45453 * 60.83014 * 17 6 5 44 44 H 1.09001 * 109.46559 * 315.57255 * 19 18 17 45 45 H 1.08992 * 109.47067 * 195.56977 * 19 18 17 46 46 H 0.96997 * 120.00637 * 0.02562 * 22 20 19 47 47 H 0.96996 * 119.99245 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7210 1.2498 5 6 3.5710 -0.7361 1.2355 6 6 4.0548 -1.4189 -0.0469 7 1 3.7130 -2.4538 -0.0600 8 7 5.5186 -1.3864 -0.0958 9 6 6.2350 -2.3441 0.5256 10 8 5.6663 -3.2349 1.1274 11 6 7.7065 -2.3117 0.4759 12 6 8.6306 -3.2689 1.0937 13 6 9.8709 -2.8473 0.7893 14 7 9.7788 -1.7122 0.0377 15 1 10.5356 -1.2134 -0.3078 16 6 8.4873 -1.3861 -0.1597 17 6 3.4865 -0.6777 -1.2592 18 7 2.0193 -0.6917 -1.1994 19 6 1.4372 -0.1104 -2.4166 20 6 1.5512 -1.0982 -3.5490 21 8 2.0662 -2.1801 -3.3606 22 7 1.0809 -0.7793 -4.7712 23 6 1.1895 -1.6757 -5.8028 24 1 1.6523 -2.6372 -5.6362 25 6 0.7051 -1.3468 -7.0629 26 7 0.1424 -0.1767 -7.2657 27 14 0.8538 -2.5680 -8.4687 28 1 0.1278 -3.8155 -8.1196 29 1 0.2647 -1.9808 -9.6989 30 1 2.2865 -2.8787 -8.7050 31 1 -0.3633 -1.0181 -0.1392 32 1 -0.3633 0.3886 0.9513 33 1 -0.3633 0.6297 -0.8122 34 1 1.6659 -1.7447 1.2574 35 1 1.6895 -0.1989 2.1402 36 1 3.9380 -1.2864 2.1018 37 1 3.9457 0.2870 1.2671 38 1 5.9722 -0.6759 -0.5756 39 1 8.3674 -4.1393 1.6761 40 1 10.7897 -3.3281 1.0912 41 1 8.1291 -0.5372 -0.7230 42 1 3.8175 -1.1698 -2.1737 43 1 3.8404 0.3533 -1.2531 44 1 1.9734 0.8026 -2.6755 45 1 0.3869 0.1222 -2.2417 46 1 0.6694 0.0860 -4.9220 47 1 -0.1960 0.0526 -8.1453 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132053797.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:05 Heat of formation + Delta-G solvation = -49.068762 kcal Electronic energy + Delta-G solvation = -28774.513393 eV Core-core repulsion = 24763.650540 eV Total energy + Delta-G solvation = -4010.862853 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.02697 -41.05884 -40.06708 -39.09342 -36.13181 -35.84339 -33.87439 -33.19709 -32.69981 -31.58263 -30.00652 -29.10692 -27.46308 -26.34279 -24.32246 -24.01589 -22.24073 -21.48119 -21.09924 -20.94351 -20.31948 -19.81188 -19.54583 -17.78061 -17.41346 -17.28487 -16.57710 -16.29017 -16.21293 -15.87165 -15.59554 -15.54222 -15.06186 -15.00309 -14.85473 -14.56995 -14.47410 -14.38045 -13.84905 -13.76469 -13.51373 -13.38640 -13.22945 -13.01680 -12.94897 -12.75973 -12.55429 -12.41463 -12.12474 -12.00610 -11.86171 -11.76594 -11.44129 -11.35391 -10.94374 -10.29965 -10.11849 -9.96832 -9.72376 -9.29695 -9.13619 -8.44066 -5.92034 0.78507 1.39782 1.41363 1.51932 1.54796 2.07922 2.12100 2.30528 2.46599 2.59636 2.85586 3.22793 3.47066 3.70371 3.85328 3.95388 4.05869 4.07638 4.11688 4.27528 4.34742 4.39484 4.43585 4.48313 4.53046 4.54568 4.64542 4.65193 4.86483 4.88325 4.99618 5.00693 5.06216 5.09752 5.12948 5.23548 5.32114 5.42776 5.44411 5.51780 5.73424 5.93391 5.94846 6.12758 6.29942 6.63283 6.65416 6.73045 7.17044 7.36599 7.61514 8.18986 8.73174 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010369 B = 0.002881 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2699.672460 B = 9715.555984 C =11790.572215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.081 3.919 3 H 0.062 0.938 4 C -0.104 4.104 5 C -0.117 4.117 6 C 0.159 3.841 7 H 0.049 0.951 8 N -0.711 5.711 9 C 0.583 3.417 10 O -0.600 6.600 11 C -0.273 4.273 12 C -0.187 4.187 13 C -0.001 4.001 14 N -0.534 5.534 15 H 0.439 0.561 16 C 0.070 3.930 17 C 0.066 3.934 18 N -0.533 5.533 19 C 0.055 3.945 20 C 0.441 3.559 21 O -0.616 6.616 22 N -0.576 5.576 23 C -0.331 4.331 24 H 0.074 0.926 25 C -0.012 4.012 26 N -0.920 5.920 27 Si 0.989 3.011 28 H -0.275 1.275 29 H -0.269 1.269 30 H -0.272 1.272 31 H 0.045 0.955 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.051 0.949 35 H 0.099 0.901 36 H 0.054 0.946 37 H 0.085 0.915 38 H 0.411 0.589 39 H 0.130 0.870 40 H 0.206 0.794 41 H 0.206 0.794 42 H 0.054 0.946 43 H 0.060 0.940 44 H 0.074 0.926 45 H 0.116 0.884 46 H 0.396 0.604 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.123 8.810 16.203 24.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.027 4.027 3 H 0.080 0.920 4 C -0.142 4.142 5 C -0.156 4.156 6 C 0.053 3.947 7 H 0.067 0.933 8 N -0.362 5.362 9 C 0.374 3.626 10 O -0.482 6.482 11 C -0.283 4.283 12 C -0.211 4.211 13 C -0.129 4.129 14 N -0.130 5.130 15 H 0.279 0.721 16 C -0.069 4.069 17 C -0.063 4.063 18 N -0.259 5.259 19 C -0.075 4.075 20 C 0.229 3.771 21 O -0.502 6.502 22 N -0.214 5.214 23 C -0.460 4.460 24 H 0.092 0.908 25 C -0.211 4.211 26 N -0.562 5.562 27 Si 0.813 3.187 28 H -0.201 1.201 29 H -0.193 1.193 30 H -0.198 1.198 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.118 0.882 36 H 0.073 0.927 37 H 0.103 0.897 38 H 0.247 0.753 39 H 0.148 0.852 40 H 0.222 0.778 41 H 0.222 0.778 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.092 0.908 45 H 0.134 0.866 46 H 0.230 0.770 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 15.959 7.129 16.570 24.085 hybrid contribution 0.245 0.554 -1.429 1.552 sum 16.204 7.683 15.141 23.470 Atomic orbital electron populations 1.21957 0.93517 1.02018 1.03119 1.21802 0.96185 0.95858 0.88824 0.91995 1.21585 0.94172 1.01044 0.97417 1.21879 0.96431 1.01090 0.96207 1.20676 0.79202 0.99584 0.95200 0.93262 1.45651 1.06339 1.29150 1.55093 1.17931 0.87054 0.80295 0.77307 1.90722 1.73365 1.38033 1.46071 1.20472 0.91096 1.03562 1.13183 1.22092 0.92244 1.01187 1.05584 1.22221 0.99465 0.90800 1.00437 1.41651 1.07742 1.22413 1.41185 0.72074 1.22328 0.83605 1.00251 1.00669 1.22087 0.87795 0.98915 0.97463 1.61228 1.06589 1.56522 1.01542 1.21821 1.02878 0.94317 0.88517 1.20924 0.82566 0.89377 0.84269 1.90509 1.49377 1.26590 1.83719 1.41914 1.53913 1.17592 1.08021 1.19568 1.38250 0.98903 0.89312 0.90750 1.25960 0.96032 0.98769 1.00368 1.69660 1.39808 1.21692 1.24998 0.85053 0.78639 0.77895 0.77136 1.20055 1.19327 1.19774 0.93539 0.89462 0.91886 0.93050 0.88235 0.92702 0.89685 0.75259 0.85208 0.77759 0.77765 0.92728 0.92220 0.90847 0.86586 0.77024 0.91356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 8.59 71.98 0.62 -2.64 16 2 C 0.08 1.92 2.44 44.94 0.11 2.03 16 3 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 4 C -0.10 -2.40 5.37 30.64 0.16 -2.24 16 5 C -0.12 -2.88 5.58 30.67 0.17 -2.71 16 6 C 0.16 4.85 2.62 45.05 0.12 4.97 16 7 H 0.05 2.01 7.58 -2.39 -0.02 2.00 16 8 N -0.71 -18.63 5.07 -445.70 -2.26 -20.89 16 9 C 0.58 18.47 7.78 86.62 0.67 19.15 16 10 O -0.60 -24.99 16.63 -4.10 -0.07 -25.06 16 11 C -0.27 -6.64 6.29 -19.04 -0.12 -6.76 16 12 C -0.19 -4.24 10.97 23.62 0.26 -3.99 16 13 C 0.00 -0.01 11.89 83.12 0.99 0.98 16 14 N -0.53 -4.90 5.90 -194.56 -1.15 -6.04 16 15 H 0.44 0.44 8.96 -92.71 -0.83 -0.39 16 16 C 0.07 0.98 11.40 83.91 0.96 1.93 16 17 C 0.07 2.05 4.58 86.33 0.40 2.45 16 18 N -0.53 -17.42 4.05 -875.62 -3.55 -20.97 16 19 C 0.06 1.91 5.31 85.56 0.45 2.36 16 20 C 0.44 21.34 7.49 87.66 0.66 22.00 16 21 O -0.62 -35.33 14.74 -3.06 -0.05 -35.37 16 22 N -0.58 -29.83 5.29 -306.98 -1.62 -31.45 16 23 C -0.33 -19.07 9.68 84.04 0.81 -18.25 16 24 H 0.07 4.61 7.16 -2.91 -0.02 4.59 16 25 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 26 N -0.92 -49.82 13.05 21.67 0.28 -49.53 16 27 Si 0.99 43.64 29.55 68.60 2.03 45.67 16 28 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 29 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 30 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 31 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.09 1.42 8.13 -2.39 -0.02 1.40 16 33 H 0.06 1.31 6.38 -2.38 -0.02 1.30 16 34 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.41 7.51 7.55 -92.71 -0.70 6.81 16 39 H 0.13 3.23 8.06 -2.91 -0.02 3.21 16 40 H 0.21 1.07 8.06 -2.91 -0.02 1.04 16 41 H 0.21 1.30 7.45 -2.91 -0.02 1.28 16 42 H 0.05 2.15 6.70 -2.39 -0.02 2.13 16 43 H 0.06 1.44 8.14 -2.38 -0.02 1.43 16 44 H 0.07 2.17 8.00 -2.39 -0.02 2.15 16 45 H 0.12 3.54 5.42 -2.39 -0.01 3.53 16 46 H 0.40 19.29 7.90 -92.71 -0.73 18.56 16 47 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 Total: -1.00 -85.67 383.74 -0.90 -86.57 By element: Atomic # 1 Polarization: 39.20 SS G_CDS: -1.24 Total: 37.96 kcal Atomic # 6 Polarization: 12.40 SS G_CDS: 6.73 Total: 19.13 kcal Atomic # 7 Polarization: -120.59 SS G_CDS: -8.30 Total: -128.89 kcal Atomic # 8 Polarization: -60.32 SS G_CDS: -0.11 Total: -60.43 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -85.67 -0.90 -86.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132053797.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.500 kcal (2) G-P(sol) polarization free energy of solvation -85.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds