Wall clock time and date at job start Tue Mar 31 2020 19:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.45965 * 2 1 4 4 C 1.53029 * 109.46411 * 119.97623 * 2 1 3 5 5 C 1.53124 * 109.27686 * 179.19301 * 4 2 1 6 6 C 1.53113 * 109.15980 * 302.34217 * 5 4 2 7 7 H 1.09003 * 109.50320 * 177.63467 * 6 5 4 8 8 N 1.46501 * 109.50661 * 297.71475 * 6 5 4 9 9 C 1.34782 * 119.99987 * 275.00307 * 8 6 5 10 10 O 1.21625 * 119.99531 * 359.97438 * 9 8 6 11 11 C 1.47257 * 119.99924 * 179.97438 * 9 8 6 12 12 C 1.46694 * 126.93998 * 179.97438 * 11 9 8 13 13 C 1.34482 * 106.32855 * 180.02562 * 12 11 9 14 14 N 1.36444 * 108.86360 * 359.97438 * 13 12 11 15 15 H 0.96993 * 124.85702 * 179.97438 * 14 13 12 16 16 C 1.34662 * 110.29174 * 359.73324 * 14 13 12 17 17 C 1.53042 * 109.27705 * 57.65761 * 6 5 4 18 18 N 1.46843 * 109.52129 * 300.81622 * 17 6 5 19 19 C 1.46900 * 110.99979 * 185.84271 * 18 17 6 20 20 C 1.50698 * 109.46962 * 300.40985 * 19 18 17 21 21 O 1.21291 * 120.00041 * 354.33617 * 20 19 18 22 22 N 1.34772 * 119.99905 * 174.33356 * 20 19 18 23 23 C 1.37106 * 120.00305 * 180.02562 * 22 20 19 24 24 H 1.08007 * 119.99327 * 359.97438 * 23 22 20 25 25 C 1.38945 * 120.00465 * 179.97438 * 23 22 20 26 26 N 1.31406 * 120.00130 * 179.97438 * 25 23 22 27 27 Si 1.86802 * 119.99868 * 359.97438 * 25 23 22 28 28 H 1.48508 * 109.46846 * 269.99826 * 27 25 23 29 29 H 1.48495 * 109.47382 * 29.99705 * 27 25 23 30 30 H 1.48499 * 109.47084 * 149.99995 * 27 25 23 31 31 H 1.09001 * 109.47326 * 173.12719 * 1 2 3 32 32 H 1.09008 * 109.46588 * 293.12892 * 1 2 3 33 33 H 1.09001 * 109.47643 * 53.12438 * 1 2 3 34 34 H 1.09005 * 109.50432 * 299.13145 * 4 2 1 35 35 H 1.08995 * 109.51006 * 59.25199 * 4 2 1 36 36 H 1.08995 * 109.52229 * 62.25106 * 5 4 2 37 37 H 1.09001 * 109.52308 * 182.37190 * 5 4 2 38 38 H 0.97002 * 120.00159 * 94.99925 * 8 6 5 39 39 H 1.07998 * 126.83377 * 0.03356 * 12 11 9 40 40 H 1.08009 * 125.56682 * 179.97438 * 13 12 11 41 41 H 1.08009 * 125.80217 * 180.29181 * 16 14 13 42 42 H 1.09000 * 109.46125 * 180.80555 * 17 6 5 43 43 H 1.08995 * 109.46547 * 60.83853 * 17 6 5 44 44 H 1.09003 * 109.47260 * 180.41087 * 19 18 17 45 45 H 1.09000 * 109.47394 * 60.40959 * 19 18 17 46 46 H 0.97000 * 120.00198 * 0.02562 * 22 20 19 47 47 H 0.97004 * 120.00360 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7209 1.2498 5 6 3.5711 -0.7361 1.2354 6 6 4.0548 -1.4188 -0.0469 7 1 5.1439 -1.3953 -0.0831 8 7 3.5947 -2.8096 -0.0641 9 6 4.3119 -3.7644 0.5608 10 8 5.3414 -3.4714 1.1385 11 6 3.8492 -5.1623 0.5440 12 6 4.5056 -6.3158 1.1689 13 6 3.7334 -7.3829 0.8977 14 7 2.6606 -6.9751 0.1599 15 1 1.9558 -7.5582 -0.1627 16 6 2.7174 -5.6465 -0.0519 17 6 3.4864 -0.6776 -1.2593 18 7 2.0192 -0.6917 -1.1995 19 6 1.4372 -0.1106 -2.4166 20 6 1.9091 1.3125 -2.5691 21 8 2.5725 1.8284 -1.6945 22 7 1.5942 2.0118 -3.6773 23 6 2.0240 3.3063 -3.8164 24 1 2.6146 3.7657 -3.0375 25 6 1.6997 4.0271 -4.9591 26 7 2.1113 5.2679 -5.0921 27 14 0.6788 3.2322 -6.3064 28 1 1.5790 2.5670 -7.2824 29 1 -0.2329 2.2246 -5.7075 30 1 -0.1212 4.2730 -7.0006 31 1 -0.3634 -1.0203 -0.1230 32 1 -0.3633 0.4037 0.9452 33 1 -0.3634 0.6167 -0.8220 34 1 1.6896 -0.1982 2.1399 35 1 1.6660 -1.7447 1.2576 36 1 3.9457 0.2870 1.2670 37 1 3.9381 -1.2853 2.1024 38 1 2.7738 -3.0433 -0.5250 39 1 5.4258 -6.3093 1.7343 40 1 3.9304 -8.3972 1.2126 41 1 1.9938 -5.0628 -0.6017 42 1 3.8173 -1.1699 -2.1738 43 1 3.8403 0.3533 -1.2534 44 1 0.3497 -0.1268 -2.3429 45 1 1.7512 -0.6924 -3.2832 46 1 1.0634 1.5993 -4.3766 47 1 1.8852 5.7711 -5.8900 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132053799.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:13 Heat of formation + Delta-G solvation = -15.171427 kcal Electronic energy + Delta-G solvation = -29475.479593 eV Core-core repulsion = 25466.086638 eV Total energy + Delta-G solvation = -4009.392954 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.28897 -40.13587 -38.82119 -37.37281 -34.64712 -33.92125 -32.54172 -31.74999 -31.66489 -30.72224 -29.15456 -27.74754 -26.38049 -24.49038 -23.26970 -22.71258 -21.18810 -20.79516 -19.79732 -19.49017 -19.12804 -18.82285 -18.10213 -16.48860 -16.04980 -15.68578 -15.46590 -14.98440 -14.90536 -14.76760 -14.37339 -14.17366 -14.00652 -13.74785 -13.63832 -13.40822 -13.15560 -12.95839 -12.82631 -12.59661 -12.31791 -12.22035 -11.89578 -11.75505 -11.69701 -11.42350 -11.30711 -11.02126 -10.65489 -10.50492 -10.35524 -10.06925 -9.93523 -9.76192 -9.54967 -9.36505 -9.06086 -8.79944 -8.56006 -8.24435 -7.54594 -6.38751 -3.90099 1.65092 2.26859 2.96078 2.96635 3.01346 3.10229 3.45697 3.61573 3.65401 4.03422 4.19712 4.61381 4.70289 4.83800 4.95650 5.03225 5.05731 5.13132 5.23297 5.30237 5.37278 5.58199 5.69461 5.71742 5.74967 5.77078 5.83615 5.84305 5.87147 5.93275 6.07952 6.11002 6.19511 6.29221 6.30896 6.39599 6.44587 6.50458 6.67514 6.70455 6.83643 7.15984 7.24015 7.38608 7.49089 7.84155 8.07676 8.49987 8.52103 8.87032 9.34569 9.72707 10.74027 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018851 B = 0.002656 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.009998 B =10540.893901 C =10932.972828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.060 3.940 3 H 0.086 0.914 4 C -0.103 4.103 5 C -0.130 4.130 6 C 0.156 3.844 7 H 0.087 0.913 8 N -0.710 5.710 9 C 0.584 3.416 10 O -0.553 6.553 11 C -0.225 4.225 12 C -0.143 4.143 13 C -0.026 4.026 14 N -0.553 5.553 15 H 0.416 0.584 16 C 0.045 3.955 17 C 0.030 3.970 18 N -0.509 5.509 19 C 0.034 3.966 20 C 0.416 3.584 21 O -0.575 6.575 22 N -0.584 5.584 23 C -0.307 4.307 24 H 0.119 0.881 25 C 0.042 3.958 26 N -0.878 5.878 27 Si 0.880 3.120 28 H -0.270 1.270 29 H -0.269 1.269 30 H -0.276 1.276 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.403 0.597 39 H 0.146 0.854 40 H 0.168 0.832 41 H 0.173 0.827 42 H 0.071 0.929 43 H 0.091 0.909 44 H 0.095 0.905 45 H 0.087 0.913 46 H 0.371 0.629 47 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.420 -24.215 7.779 25.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.047 4.047 3 H 0.104 0.896 4 C -0.141 4.141 5 C -0.169 4.169 6 C 0.052 3.948 7 H 0.105 0.895 8 N -0.361 5.361 9 C 0.372 3.628 10 O -0.432 6.432 11 C -0.235 4.235 12 C -0.168 4.168 13 C -0.154 4.154 14 N -0.148 5.148 15 H 0.252 0.748 16 C -0.091 4.091 17 C -0.098 4.098 18 N -0.233 5.233 19 C -0.098 4.098 20 C 0.202 3.798 21 O -0.460 6.460 22 N -0.222 5.222 23 C -0.436 4.436 24 H 0.137 0.863 25 C -0.161 4.161 26 N -0.517 5.517 27 Si 0.706 3.294 28 H -0.196 1.196 29 H -0.194 1.194 30 H -0.201 1.201 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.238 0.762 39 H 0.164 0.836 40 H 0.185 0.815 41 H 0.190 0.810 42 H 0.089 0.911 43 H 0.108 0.892 44 H 0.113 0.887 45 H 0.105 0.895 46 H 0.203 0.797 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.455 -24.021 8.640 25.761 hybrid contribution -1.363 0.060 -1.740 2.211 sum -4.818 -23.961 6.901 25.396 Atomic orbital electron populations 1.21865 0.95303 1.01407 1.01539 1.21914 0.94490 0.99159 0.89180 0.89615 1.21531 0.95188 1.00501 0.96862 1.21932 0.96262 1.00990 0.97716 1.20968 0.99013 0.79960 0.94899 0.89460 1.45859 1.27419 1.07406 1.55402 1.17455 0.83262 0.83896 0.78206 1.90748 1.24784 1.82899 1.44817 1.20576 0.98986 0.93924 1.10019 1.21975 1.00896 0.90326 1.03565 1.21789 0.90795 0.99916 1.02894 1.41595 1.21863 1.08026 1.43281 0.74787 1.22000 0.99810 0.84246 1.03014 1.22620 0.88248 1.02147 0.96832 1.62429 1.07085 1.52295 1.01449 1.22163 1.01009 0.92529 0.94079 1.21022 0.85982 0.88929 0.83891 1.90449 1.42962 1.71315 1.41247 1.42414 1.48110 1.13675 1.17970 1.19446 1.31741 0.86535 1.05903 0.86332 1.25080 0.97753 0.95582 0.97721 1.69622 1.44809 1.08690 1.28596 0.86667 0.80594 0.79557 0.82551 1.19572 1.19432 1.20150 0.92570 0.92639 0.92712 0.92111 0.91992 0.90957 0.91752 0.76194 0.83610 0.81463 0.81005 0.91086 0.89155 0.88709 0.89478 0.79656 0.91529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 8.52 37.16 0.32 -1.52 16 2 C 0.06 0.88 2.05 -67.72 -0.14 0.74 16 3 H 0.09 1.61 5.69 -51.93 -0.30 1.31 16 4 C -0.10 -1.33 5.20 -26.65 -0.14 -1.47 16 5 C -0.13 -1.83 5.67 -26.61 -0.15 -1.98 16 6 C 0.16 2.20 2.81 -67.85 -0.19 2.01 16 7 H 0.09 1.35 7.58 -51.93 -0.39 0.96 16 8 N -0.71 -8.74 4.40 -54.85 -0.24 -8.98 16 9 C 0.58 8.25 7.77 -12.59 -0.10 8.15 16 10 O -0.55 -9.96 16.63 5.26 0.09 -9.88 16 11 C -0.22 -2.57 6.29 -103.35 -0.65 -3.22 16 12 C -0.14 -1.50 10.97 -37.50 -0.41 -1.91 16 13 C -0.03 -0.19 11.88 -16.83 -0.20 -0.39 16 14 N -0.55 -3.22 5.90 -12.84 -0.08 -3.30 16 15 H 0.42 0.98 8.96 -40.82 -0.37 0.61 16 16 C 0.05 0.36 11.40 -16.84 -0.19 0.16 16 17 C 0.03 0.45 4.59 -3.83 -0.02 0.43 16 18 N -0.51 -7.09 4.17 -228.12 -0.95 -8.05 16 19 C 0.03 0.51 5.45 -4.98 -0.03 0.48 16 20 C 0.42 8.62 7.18 -10.99 -0.08 8.54 16 21 O -0.57 -13.82 11.22 5.55 0.06 -13.76 16 22 N -0.58 -13.16 5.09 -10.96 -0.06 -13.21 16 23 C -0.31 -8.39 10.16 -14.93 -0.15 -8.54 16 24 H 0.12 3.73 7.39 -52.48 -0.39 3.34 16 25 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 26 N -0.88 -25.16 13.96 55.50 0.77 -24.39 16 27 Si 0.88 18.82 27.74 -169.99 -4.71 14.11 16 28 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 29 H -0.27 -5.19 6.52 56.52 0.37 -4.83 16 30 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 33 H 0.05 0.76 6.65 -51.93 -0.35 0.42 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.76 7.72 -51.93 -0.40 0.36 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.40 4.21 7.11 -40.82 -0.29 3.92 16 39 H 0.15 1.54 8.06 -52.49 -0.42 1.11 16 40 H 0.17 0.66 8.06 -52.48 -0.42 0.24 16 41 H 0.17 0.90 7.45 -52.48 -0.39 0.51 16 42 H 0.07 1.02 8.12 -51.93 -0.42 0.59 16 43 H 0.09 1.69 5.68 -51.93 -0.29 1.40 16 44 H 0.09 1.27 6.10 -51.93 -0.32 0.96 16 45 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.37 7.36 5.76 -40.82 -0.24 7.13 16 47 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 372.78 15.07 5.62 5.62 Total: -1.00 -34.16 372.78 -8.41 -42.57 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: -6.69 Total: 16.76 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -2.23 Total: 2.51 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: -0.55 Total: -57.93 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: 0.15 Total: -23.63 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -4.71 Total: 14.11 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.16 -8.41 -42.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132053799.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.396 kcal (2) G-P(sol) polarization free energy of solvation -34.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds