Wall clock time and date at job start Tue Mar 31 2020 19:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.45965 * 2 1 4 4 C 1.53029 * 109.46411 * 119.97623 * 2 1 3 5 5 C 1.53124 * 109.27686 * 179.19301 * 4 2 1 6 6 C 1.53113 * 109.15980 * 302.34217 * 5 4 2 7 7 H 1.09003 * 109.50320 * 177.63467 * 6 5 4 8 8 N 1.46501 * 109.50661 * 297.71475 * 6 5 4 9 9 C 1.34782 * 119.99987 * 275.00307 * 8 6 5 10 10 O 1.21625 * 119.99531 * 359.97438 * 9 8 6 11 11 C 1.47257 * 119.99924 * 179.97438 * 9 8 6 12 12 C 1.46694 * 126.93998 * 179.97438 * 11 9 8 13 13 C 1.34482 * 106.32855 * 180.02562 * 12 11 9 14 14 N 1.36444 * 108.86360 * 359.97438 * 13 12 11 15 15 H 0.96993 * 124.85702 * 179.97438 * 14 13 12 16 16 C 1.34662 * 110.29174 * 359.73324 * 14 13 12 17 17 C 1.53042 * 109.27705 * 57.65761 * 6 5 4 18 18 N 1.46843 * 109.52129 * 300.81622 * 17 6 5 19 19 C 1.46900 * 110.99979 * 185.84271 * 18 17 6 20 20 C 1.50698 * 109.46962 * 300.40985 * 19 18 17 21 21 O 1.21291 * 120.00041 * 354.33617 * 20 19 18 22 22 N 1.34772 * 119.99905 * 174.33356 * 20 19 18 23 23 C 1.37106 * 120.00305 * 180.02562 * 22 20 19 24 24 H 1.08007 * 119.99327 * 359.97438 * 23 22 20 25 25 C 1.38945 * 120.00465 * 179.97438 * 23 22 20 26 26 N 1.31406 * 120.00130 * 179.97438 * 25 23 22 27 27 Si 1.86802 * 119.99868 * 359.97438 * 25 23 22 28 28 H 1.48508 * 109.46846 * 269.99826 * 27 25 23 29 29 H 1.48495 * 109.47382 * 29.99705 * 27 25 23 30 30 H 1.48499 * 109.47084 * 149.99995 * 27 25 23 31 31 H 1.09001 * 109.47326 * 173.12719 * 1 2 3 32 32 H 1.09008 * 109.46588 * 293.12892 * 1 2 3 33 33 H 1.09001 * 109.47643 * 53.12438 * 1 2 3 34 34 H 1.09005 * 109.50432 * 299.13145 * 4 2 1 35 35 H 1.08995 * 109.51006 * 59.25199 * 4 2 1 36 36 H 1.08995 * 109.52229 * 62.25106 * 5 4 2 37 37 H 1.09001 * 109.52308 * 182.37190 * 5 4 2 38 38 H 0.97002 * 120.00159 * 94.99925 * 8 6 5 39 39 H 1.07998 * 126.83377 * 0.03356 * 12 11 9 40 40 H 1.08009 * 125.56682 * 179.97438 * 13 12 11 41 41 H 1.08009 * 125.80217 * 180.29181 * 16 14 13 42 42 H 1.09000 * 109.46125 * 180.80555 * 17 6 5 43 43 H 1.08995 * 109.46547 * 60.83853 * 17 6 5 44 44 H 1.09003 * 109.47260 * 180.41087 * 19 18 17 45 45 H 1.09000 * 109.47394 * 60.40959 * 19 18 17 46 46 H 0.97000 * 120.00198 * 0.02562 * 22 20 19 47 47 H 0.97004 * 120.00360 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7209 1.2498 5 6 3.5711 -0.7361 1.2354 6 6 4.0548 -1.4188 -0.0469 7 1 5.1439 -1.3953 -0.0831 8 7 3.5947 -2.8096 -0.0641 9 6 4.3119 -3.7644 0.5608 10 8 5.3414 -3.4714 1.1385 11 6 3.8492 -5.1623 0.5440 12 6 4.5056 -6.3158 1.1689 13 6 3.7334 -7.3829 0.8977 14 7 2.6606 -6.9751 0.1599 15 1 1.9558 -7.5582 -0.1627 16 6 2.7174 -5.6465 -0.0519 17 6 3.4864 -0.6776 -1.2593 18 7 2.0192 -0.6917 -1.1995 19 6 1.4372 -0.1106 -2.4166 20 6 1.9091 1.3125 -2.5691 21 8 2.5725 1.8284 -1.6945 22 7 1.5942 2.0118 -3.6773 23 6 2.0240 3.3063 -3.8164 24 1 2.6146 3.7657 -3.0375 25 6 1.6997 4.0271 -4.9591 26 7 2.1113 5.2679 -5.0921 27 14 0.6788 3.2322 -6.3064 28 1 1.5790 2.5670 -7.2824 29 1 -0.2329 2.2246 -5.7075 30 1 -0.1212 4.2730 -7.0006 31 1 -0.3634 -1.0203 -0.1230 32 1 -0.3633 0.4037 0.9452 33 1 -0.3634 0.6167 -0.8220 34 1 1.6896 -0.1982 2.1399 35 1 1.6660 -1.7447 1.2576 36 1 3.9457 0.2870 1.2670 37 1 3.9381 -1.2853 2.1024 38 1 2.7738 -3.0433 -0.5250 39 1 5.4258 -6.3093 1.7343 40 1 3.9304 -8.3972 1.2126 41 1 1.9938 -5.0628 -0.6017 42 1 3.8173 -1.1699 -2.1738 43 1 3.8403 0.3533 -1.2534 44 1 0.3497 -0.1268 -2.3429 45 1 1.7512 -0.6924 -3.2832 46 1 1.0634 1.5993 -4.3766 47 1 1.8852 5.7711 -5.8900 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132053799.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:11 Heat of formation + Delta-G solvation = -42.697274 kcal Electronic energy + Delta-G solvation = -29476.673203 eV Core-core repulsion = 25466.086638 eV Total energy + Delta-G solvation = -4010.586565 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.97806 -41.41220 -40.13490 -38.79433 -36.16204 -35.50861 -33.87119 -33.63307 -32.67042 -31.48042 -29.86297 -29.17422 -27.56577 -26.20942 -24.21314 -23.98508 -22.34493 -21.51411 -21.24969 -20.77601 -20.41855 -19.80547 -19.42926 -17.74043 -17.39757 -16.95463 -16.83271 -16.42595 -16.17615 -15.91418 -15.59129 -15.29670 -15.11601 -14.95991 -14.74983 -14.57320 -14.43227 -14.27915 -13.99103 -13.80830 -13.63177 -13.33185 -13.04454 -12.99665 -12.84146 -12.78975 -12.53525 -12.41090 -12.24104 -11.99440 -11.73394 -11.59549 -11.32735 -11.11837 -10.99053 -10.89415 -10.20357 -10.02877 -9.63940 -9.21603 -9.01433 -8.41414 -6.01621 0.88843 1.30091 1.35734 1.44740 1.61727 1.95324 2.23203 2.32676 2.57605 2.69274 2.96187 3.00593 3.16231 3.78022 3.88685 4.03960 4.10369 4.16447 4.20849 4.27699 4.42029 4.46745 4.51677 4.58752 4.63811 4.67401 4.71968 4.80012 4.92947 4.96648 5.02670 5.06764 5.10203 5.14686 5.20804 5.23293 5.30472 5.51894 5.53885 5.66811 5.81518 5.93449 6.02702 6.03540 6.13095 6.58681 6.75287 6.87878 6.90019 7.40954 7.50111 7.98117 8.76274 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018851 B = 0.002656 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.009998 B =10540.893901 C =10932.972828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.060 3.940 3 H 0.037 0.963 4 C -0.092 4.092 5 C -0.128 4.128 6 C 0.165 3.835 7 H 0.065 0.935 8 N -0.693 5.693 9 C 0.581 3.419 10 O -0.606 6.606 11 C -0.270 4.270 12 C -0.187 4.187 13 C -0.004 4.004 14 N -0.535 5.535 15 H 0.438 0.562 16 C 0.072 3.928 17 C 0.038 3.962 18 N -0.483 5.483 19 C 0.042 3.958 20 C 0.418 3.582 21 O -0.612 6.612 22 N -0.590 5.590 23 C -0.325 4.325 24 H 0.052 0.948 25 C -0.018 4.018 26 N -0.937 5.937 27 Si 0.965 3.035 28 H -0.259 1.259 29 H -0.226 1.226 30 H -0.278 1.278 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.042 0.958 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.051 0.949 37 H 0.057 0.943 38 H 0.416 0.584 39 H 0.128 0.872 40 H 0.202 0.798 41 H 0.206 0.794 42 H 0.084 0.916 43 H 0.047 0.953 44 H 0.127 0.873 45 H 0.123 0.877 46 H 0.389 0.611 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.409 -29.145 6.144 30.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.049 4.049 3 H 0.055 0.945 4 C -0.130 4.130 5 C -0.167 4.167 6 C 0.059 3.941 7 H 0.083 0.917 8 N -0.345 5.345 9 C 0.372 3.628 10 O -0.489 6.489 11 C -0.281 4.281 12 C -0.212 4.212 13 C -0.132 4.132 14 N -0.131 5.131 15 H 0.278 0.722 16 C -0.066 4.066 17 C -0.091 4.091 18 N -0.206 5.206 19 C -0.090 4.090 20 C 0.206 3.794 21 O -0.498 6.498 22 N -0.231 5.231 23 C -0.454 4.454 24 H 0.070 0.930 25 C -0.217 4.217 26 N -0.577 5.577 27 Si 0.785 3.215 28 H -0.183 1.183 29 H -0.149 1.149 30 H -0.204 1.204 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.254 0.746 39 H 0.146 0.854 40 H 0.219 0.781 41 H 0.222 0.778 42 H 0.103 0.897 43 H 0.065 0.935 44 H 0.145 0.855 45 H 0.141 0.859 46 H 0.225 0.775 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.495 -29.015 7.012 30.777 hybrid contribution -0.015 1.563 -1.056 1.886 sum -7.510 -27.453 5.957 29.078 Atomic orbital electron populations 1.21829 0.93032 1.03071 1.01610 1.21874 0.96249 0.96721 0.90025 0.94470 1.21464 0.93654 1.01474 0.96424 1.21873 0.97621 0.99634 0.97540 1.20669 0.97816 0.81168 0.94456 0.91671 1.45604 1.27623 1.06081 1.55151 1.17948 0.82497 0.85211 0.77193 1.90715 1.27165 1.83837 1.47229 1.20463 1.01575 0.92514 1.13504 1.22072 1.01793 0.91737 1.05558 1.22180 0.89721 1.00351 1.00936 1.41650 1.21804 1.07723 1.41889 0.72169 1.22344 0.98399 0.85000 1.00847 1.22445 0.89019 0.99845 0.97747 1.62529 1.06021 1.50865 1.01191 1.22405 1.02794 0.88153 0.95621 1.22392 0.83795 0.90945 0.82273 1.90489 1.43977 1.72870 1.42444 1.42254 1.49319 1.12099 1.19419 1.18978 1.32388 0.89019 1.05052 0.92982 1.26164 0.98991 0.95923 1.00601 1.69816 1.46955 1.11029 1.29942 0.85360 0.78927 0.79204 0.77989 1.18320 1.14944 1.20378 0.89542 0.91928 0.93846 0.91408 0.89921 0.93067 0.92396 0.74579 0.85394 0.78075 0.77770 0.89739 0.93456 0.85492 0.85882 0.77520 0.91279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.52 71.98 0.61 -2.47 16 2 C 0.06 1.67 2.05 44.94 0.09 1.76 16 3 H 0.04 1.45 5.69 -2.39 -0.01 1.44 16 4 C -0.09 -2.29 5.20 30.65 0.16 -2.13 16 5 C -0.13 -3.75 5.67 30.67 0.17 -3.57 16 6 C 0.16 4.74 2.81 45.04 0.13 4.87 16 7 H 0.07 2.18 7.58 -2.39 -0.02 2.16 16 8 N -0.69 -16.23 4.40 -445.70 -1.96 -18.19 16 9 C 0.58 16.43 7.77 86.61 0.67 17.10 16 10 O -0.61 -23.06 16.63 -4.11 -0.07 -23.13 16 11 C -0.27 -5.81 6.29 -19.04 -0.12 -5.93 16 12 C -0.19 -3.80 10.97 23.62 0.26 -3.54 16 13 C 0.00 -0.04 11.88 83.12 0.99 0.95 16 14 N -0.53 -3.72 5.90 -194.55 -1.15 -4.87 16 15 H 0.44 -0.43 8.96 -92.71 -0.83 -1.26 16 16 C 0.07 0.83 11.40 83.91 0.96 1.79 16 17 C 0.04 1.14 4.59 86.33 0.40 1.54 16 18 N -0.48 -12.35 4.17 -875.65 -3.65 -16.00 16 19 C 0.04 1.11 5.45 85.56 0.47 1.57 16 20 C 0.42 17.27 7.18 87.66 0.63 17.89 16 21 O -0.61 -31.05 11.22 -3.06 -0.03 -31.08 16 22 N -0.59 -26.33 5.09 -306.99 -1.56 -27.89 16 23 C -0.32 -18.56 10.16 84.04 0.85 -17.70 16 24 H 0.05 3.58 7.39 -2.91 -0.02 3.56 16 25 C -0.02 -1.01 5.50 84.93 0.47 -0.54 16 26 N -0.94 -56.26 13.96 21.66 0.30 -55.95 16 27 Si 0.97 37.83 27.74 68.60 1.90 39.74 16 28 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 29 H -0.23 -7.25 6.52 99.48 0.65 -6.60 16 30 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 31 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 33 H 0.04 1.07 6.65 -2.39 -0.02 1.06 16 34 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.08 1.74 7.72 -2.39 -0.02 1.73 16 36 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.42 7.28 7.11 -92.71 -0.66 6.62 16 39 H 0.13 2.90 8.06 -2.91 -0.02 2.87 16 40 H 0.20 0.72 8.06 -2.91 -0.02 0.69 16 41 H 0.21 0.91 7.45 -2.91 -0.02 0.89 16 42 H 0.08 2.30 8.12 -2.39 -0.02 2.28 16 43 H 0.05 1.88 5.68 -2.39 -0.01 1.87 16 44 H 0.13 2.73 6.10 -2.39 -0.01 2.71 16 45 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 46 H 0.39 14.25 5.76 -92.71 -0.53 13.72 16 47 H 0.28 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -85.99 372.78 -0.54 -86.53 By element: Atomic # 1 Polarization: 40.31 SS G_CDS: -1.05 Total: 39.26 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: 6.74 Total: 11.60 kcal Atomic # 7 Polarization: -114.89 SS G_CDS: -8.02 Total: -122.91 kcal Atomic # 8 Polarization: -54.11 SS G_CDS: -0.10 Total: -54.22 kcal Atomic # 14 Polarization: 37.83 SS G_CDS: 1.90 Total: 39.74 kcal Total: -85.99 -0.54 -86.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132053799.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.832 kcal (2) G-P(sol) polarization free energy of solvation -85.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds