Wall clock time and date at job start Tue Mar 31 2020 19:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 109.44945 * 2 1 4 4 C 1.53039 * 109.46631 * 240.03155 * 2 1 3 5 5 C 1.53113 * 109.27837 * 180.80430 * 4 2 1 6 6 C 1.53121 * 109.16231 * 57.65145 * 5 4 2 7 7 H 1.09003 * 109.50278 * 182.40693 * 6 5 4 8 8 N 1.46500 * 109.50321 * 62.28933 * 6 5 4 9 9 C 1.34771 * 120.00563 * 85.19412 * 8 6 5 10 10 O 1.21636 * 119.99392 * 0.02562 * 9 8 6 11 11 C 1.47259 * 120.00541 * 179.97438 * 9 8 6 12 12 C 1.46682 * 126.94767 * 179.97438 * 11 9 8 13 13 C 1.34480 * 106.33834 * 179.97438 * 12 11 9 14 14 N 1.36453 * 108.85640 * 0.02562 * 13 12 11 15 15 H 0.96996 * 124.85465 * 180.02562 * 14 13 12 16 16 C 1.34662 * 110.29387 * 359.74528 * 14 13 12 17 17 C 1.53034 * 109.27762 * 302.34546 * 6 5 4 18 18 N 1.46842 * 109.52377 * 59.17993 * 17 6 5 19 19 C 1.46904 * 111.00247 * 174.16246 * 18 17 6 20 20 C 1.50700 * 109.47192 * 66.04251 * 19 18 17 21 21 O 1.21293 * 119.99810 * 0.02562 * 20 19 18 22 22 N 1.34777 * 119.99675 * 180.28082 * 20 19 18 23 23 C 1.37102 * 119.99634 * 179.72687 * 22 20 19 24 24 H 1.08002 * 119.99868 * 359.97438 * 23 22 20 25 25 C 1.38945 * 119.99860 * 179.97438 * 23 22 20 26 26 N 1.31407 * 120.00134 * 179.97438 * 25 23 22 27 27 Si 1.86800 * 119.99887 * 0.02562 * 25 23 22 28 28 H 1.48500 * 109.47520 * 89.99803 * 27 25 23 29 29 H 1.48504 * 109.47004 * 209.99555 * 27 25 23 30 30 H 1.48497 * 109.47481 * 329.99259 * 27 25 23 31 31 H 1.08996 * 109.47647 * 300.02350 * 1 2 3 32 32 H 1.09008 * 109.47232 * 60.03061 * 1 2 3 33 33 H 1.09000 * 109.46886 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.50546 * 60.85727 * 4 2 1 35 35 H 1.09000 * 109.52773 * 300.76305 * 4 2 1 36 36 H 1.09004 * 109.52464 * 297.74820 * 5 4 2 37 37 H 1.09002 * 109.52417 * 177.55985 * 5 4 2 38 38 H 0.97006 * 119.99553 * 265.19490 * 8 6 5 39 39 H 1.08007 * 126.82738 * 0.02562 * 12 11 9 40 40 H 1.07997 * 125.57673 * 180.02562 * 13 12 11 41 41 H 1.07997 * 125.80485 * 180.29400 * 16 14 13 42 42 H 1.09006 * 109.46462 * 299.16400 * 17 6 5 43 43 H 1.09008 * 109.45554 * 179.19077 * 17 6 5 44 44 H 1.09009 * 109.46542 * 306.04282 * 19 18 17 45 45 H 1.08998 * 109.47050 * 186.04816 * 19 18 17 46 46 H 0.97001 * 120.00485 * 359.71840 * 22 20 19 47 47 H 0.97004 * 120.00488 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0400 -0.7208 -1.2500 5 6 3.5710 -0.7359 -1.2355 6 6 4.0548 -1.4186 0.0468 7 1 5.1440 -1.3944 0.0833 8 7 3.5949 -2.8095 0.0638 9 6 4.3141 -3.7648 -0.5577 10 8 5.3455 -3.4723 -1.1323 11 6 3.8521 -5.1629 -0.5401 12 6 4.5101 -6.3169 -1.1623 13 6 3.7381 -7.3841 -0.8912 14 7 2.6637 -6.9758 -0.1557 15 1 1.9586 -7.5589 0.1663 16 6 2.7254 -5.6487 0.0642 17 6 3.4864 -0.6776 1.2591 18 7 2.0193 -0.6917 1.1994 19 6 1.4372 -0.1105 2.4165 20 6 1.7791 1.3555 2.4863 21 8 2.4420 1.8661 1.6083 22 7 1.3525 2.0981 3.5271 23 6 1.6683 3.4306 3.5934 24 1 2.2592 3.8850 2.8119 25 6 1.2281 4.1963 4.6660 26 7 1.5312 5.4733 4.7299 27 14 0.2067 3.4100 6.0180 28 1 1.1060 2.8898 7.0790 29 1 -0.7098 4.4237 6.5992 30 1 -0.5884 2.2914 5.4508 31 1 -0.3634 0.5142 0.8897 32 1 -0.3634 0.5134 -0.8903 33 1 -0.3633 -1.0277 0.0005 34 1 1.6895 -0.1981 -2.1400 35 1 1.6660 -1.7446 -1.2583 36 1 3.9457 0.2873 -1.2671 37 1 3.9380 -1.2860 -2.1020 38 1 2.7725 -3.0427 0.5224 39 1 5.4318 -6.3107 -1.7253 40 1 3.9360 -8.3985 -1.2044 41 1 2.0065 -5.0666 0.6217 42 1 3.8402 0.3534 1.2533 43 1 3.8174 -1.1699 2.1736 44 1 1.8412 -0.6200 3.2914 45 1 0.3540 -0.2304 2.3942 46 1 0.8220 1.6898 4.2291 47 1 1.2242 6.0078 5.4789 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132053800.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:16 Heat of formation + Delta-G solvation = -14.114654 kcal Electronic energy + Delta-G solvation = -29477.422754 eV Core-core repulsion = 25468.075625 eV Total energy + Delta-G solvation = -4009.347129 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.29284 -40.14515 -38.83661 -37.36015 -34.65309 -33.89219 -32.55921 -31.74665 -31.66716 -30.72312 -29.15593 -27.74857 -26.37817 -24.47760 -23.27549 -22.70840 -21.19029 -20.79975 -19.79815 -19.49925 -19.14078 -18.82255 -18.10002 -16.48176 -16.04625 -15.70346 -15.46659 -15.01313 -14.91302 -14.75730 -14.37115 -14.17595 -14.02767 -13.71168 -13.62434 -13.38336 -13.16353 -12.96110 -12.82600 -12.57108 -12.31910 -12.22310 -11.92684 -11.73905 -11.70770 -11.42196 -11.29282 -11.03460 -10.65746 -10.49024 -10.34312 -10.07127 -9.91761 -9.76737 -9.54771 -9.36469 -9.06628 -8.80646 -8.56496 -8.24644 -7.52266 -6.38897 -3.90212 1.64530 2.26392 2.95662 2.96473 3.01170 3.10107 3.44637 3.61416 3.64630 4.03272 4.19657 4.61076 4.69989 4.83445 4.95242 5.02991 5.06117 5.13419 5.24352 5.30606 5.36749 5.59046 5.69935 5.73524 5.75307 5.77092 5.83157 5.84761 5.88530 5.93950 6.09373 6.11592 6.20222 6.27558 6.32402 6.39864 6.44716 6.49790 6.67169 6.73416 6.84953 7.15572 7.24472 7.39444 7.48983 7.83223 8.07683 8.49892 8.51207 8.86972 9.34418 9.72647 10.73884 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.020004 B = 0.002627 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.368461 B =10656.136704 C =11080.878193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.055 3.945 3 H 0.095 0.905 4 C -0.103 4.103 5 C -0.130 4.130 6 C 0.156 3.844 7 H 0.088 0.912 8 N -0.710 5.710 9 C 0.584 3.416 10 O -0.554 6.554 11 C -0.225 4.225 12 C -0.143 4.143 13 C -0.026 4.026 14 N -0.553 5.553 15 H 0.416 0.584 16 C 0.046 3.954 17 C 0.034 3.966 18 N -0.509 5.509 19 C 0.035 3.965 20 C 0.416 3.584 21 O -0.574 6.574 22 N -0.584 5.584 23 C -0.307 4.307 24 H 0.119 0.881 25 C 0.042 3.958 26 N -0.878 5.878 27 Si 0.880 3.120 28 H -0.270 1.270 29 H -0.276 1.276 30 H -0.269 1.269 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.403 0.597 39 H 0.146 0.854 40 H 0.168 0.832 41 H 0.173 0.827 42 H 0.084 0.916 43 H 0.071 0.929 44 H 0.087 0.913 45 H 0.094 0.906 46 H 0.371 0.629 47 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.936 -24.682 -6.826 25.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.053 4.053 3 H 0.113 0.887 4 C -0.141 4.141 5 C -0.169 4.169 6 C 0.052 3.948 7 H 0.106 0.894 8 N -0.361 5.361 9 C 0.372 3.628 10 O -0.433 6.433 11 C -0.235 4.235 12 C -0.168 4.168 13 C -0.154 4.154 14 N -0.148 5.148 15 H 0.252 0.748 16 C -0.091 4.091 17 C -0.094 4.094 18 N -0.233 5.233 19 C -0.097 4.097 20 C 0.202 3.798 21 O -0.459 6.459 22 N -0.222 5.222 23 C -0.436 4.436 24 H 0.137 0.863 25 C -0.161 4.161 26 N -0.517 5.517 27 Si 0.706 3.294 28 H -0.196 1.196 29 H -0.202 1.202 30 H -0.194 1.194 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.238 0.762 39 H 0.164 0.836 40 H 0.185 0.815 41 H 0.190 0.810 42 H 0.101 0.899 43 H 0.090 0.910 44 H 0.106 0.894 45 H 0.112 0.888 46 H 0.203 0.797 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.996 -24.483 -7.706 25.745 hybrid contribution -1.406 0.072 1.716 2.219 sum -3.402 -24.411 -5.990 25.365 Atomic orbital electron populations 1.21848 0.95335 1.01149 1.01676 1.22049 0.94539 0.99787 0.88915 0.88725 1.21531 0.95109 1.00436 0.97000 1.21934 0.96335 1.00957 0.97668 1.20958 0.98990 0.80006 0.94892 0.89447 1.45845 1.27251 1.07358 1.55614 1.17452 0.83272 0.83903 0.78172 1.90751 1.24693 1.82939 1.44883 1.20572 0.99163 0.93885 1.09901 1.21973 1.00856 0.90287 1.03638 1.21790 0.90633 0.99900 1.03069 1.41600 1.21786 1.08129 1.43248 0.74782 1.22003 0.99893 0.84296 1.02863 1.22532 0.88364 1.01626 0.96908 1.62412 1.06879 1.52453 1.01551 1.22151 1.01364 0.92077 0.94116 1.21021 0.85524 0.89078 0.84171 1.90434 1.42884 1.73508 1.39078 1.42414 1.48062 1.10394 1.21299 1.19444 1.32314 0.82576 1.09276 0.86330 1.25079 0.97801 0.95425 0.97830 1.69622 1.44938 1.05656 1.31504 0.86669 0.80663 0.79458 0.82590 1.19578 1.20151 1.19431 0.92648 0.92706 0.92824 0.92127 0.92090 0.90954 0.91765 0.76168 0.83609 0.81461 0.81000 0.89851 0.91036 0.89436 0.88821 0.79659 0.91529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.76 37.16 0.33 -1.58 16 2 C 0.05 0.81 1.95 -67.72 -0.13 0.68 16 3 H 0.10 1.81 5.36 -51.92 -0.28 1.53 16 4 C -0.10 -1.35 5.21 -26.65 -0.14 -1.49 16 5 C -0.13 -1.83 5.67 -26.61 -0.15 -1.98 16 6 C 0.16 2.17 2.81 -67.85 -0.19 1.98 16 7 H 0.09 1.33 7.58 -51.93 -0.39 0.93 16 8 N -0.71 -8.66 4.40 -54.85 -0.24 -8.90 16 9 C 0.58 8.20 7.78 -12.60 -0.10 8.10 16 10 O -0.55 -9.90 16.63 5.25 0.09 -9.82 16 11 C -0.22 -2.56 6.29 -103.35 -0.65 -3.21 16 12 C -0.14 -1.49 10.97 -37.50 -0.41 -1.90 16 13 C -0.03 -0.19 11.89 -16.82 -0.20 -0.39 16 14 N -0.55 -3.20 5.90 -12.85 -0.08 -3.28 16 15 H 0.42 0.97 8.96 -40.82 -0.37 0.60 16 16 C 0.05 0.35 11.40 -16.84 -0.19 0.16 16 17 C 0.03 0.50 4.69 -3.84 -0.02 0.48 16 18 N -0.51 -7.10 4.17 -228.11 -0.95 -8.05 16 19 C 0.03 0.52 5.30 -4.97 -0.03 0.50 16 20 C 0.42 8.60 7.04 -10.98 -0.08 8.52 16 21 O -0.57 -13.76 11.20 5.55 0.06 -13.70 16 22 N -0.58 -13.13 5.09 -10.96 -0.06 -13.18 16 23 C -0.31 -8.37 10.16 -14.93 -0.15 -8.52 16 24 H 0.12 3.72 7.39 -52.49 -0.39 3.34 16 25 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 26 N -0.88 -25.14 13.96 55.50 0.77 -24.36 16 27 Si 0.88 18.80 27.74 -169.99 -4.71 14.09 16 28 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 29 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 30 H -0.27 -5.19 6.52 56.52 0.37 -4.82 16 31 H 0.05 0.80 6.24 -51.93 -0.32 0.48 16 32 H 0.05 0.70 8.14 -51.92 -0.42 0.27 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.76 7.73 -51.93 -0.40 0.36 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.40 4.18 7.12 -40.82 -0.29 3.89 16 39 H 0.15 1.53 8.06 -52.48 -0.42 1.10 16 40 H 0.17 0.65 8.06 -52.49 -0.42 0.23 16 41 H 0.17 0.89 7.45 -52.49 -0.39 0.50 16 42 H 0.08 1.52 6.00 -51.93 -0.31 1.21 16 43 H 0.07 0.98 8.06 -51.92 -0.42 0.57 16 44 H 0.09 1.15 8.06 -51.92 -0.42 0.73 16 45 H 0.09 1.25 6.32 -51.93 -0.33 0.92 16 46 H 0.37 7.35 5.76 -40.82 -0.24 7.11 16 47 H 0.27 7.25 8.31 -40.82 -0.34 6.92 16 LS Contribution 372.40 15.07 5.61 5.61 Total: -1.00 -34.08 372.40 -8.38 -42.46 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: -6.67 Total: 16.75 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -2.21 Total: 2.38 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: -0.55 Total: -57.77 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: 0.15 Total: -23.52 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -4.71 Total: 14.09 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.08 -8.38 -42.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132053800.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.347 kcal (2) G-P(sol) polarization free energy of solvation -34.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds