Wall clock time and date at job start Tue Mar 31 2020 19:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 109.44945 * 2 1 4 4 C 1.53039 * 109.46631 * 240.03155 * 2 1 3 5 5 C 1.53113 * 109.27837 * 180.80430 * 4 2 1 6 6 C 1.53121 * 109.16231 * 57.65145 * 5 4 2 7 7 H 1.09003 * 109.50278 * 182.40693 * 6 5 4 8 8 N 1.46500 * 109.50321 * 62.28933 * 6 5 4 9 9 C 1.34771 * 120.00563 * 85.19412 * 8 6 5 10 10 O 1.21636 * 119.99392 * 0.02562 * 9 8 6 11 11 C 1.47259 * 120.00541 * 179.97438 * 9 8 6 12 12 C 1.46682 * 126.94767 * 179.97438 * 11 9 8 13 13 C 1.34480 * 106.33834 * 179.97438 * 12 11 9 14 14 N 1.36453 * 108.85640 * 0.02562 * 13 12 11 15 15 H 0.96996 * 124.85465 * 180.02562 * 14 13 12 16 16 C 1.34662 * 110.29387 * 359.74528 * 14 13 12 17 17 C 1.53034 * 109.27762 * 302.34546 * 6 5 4 18 18 N 1.46842 * 109.52377 * 59.17993 * 17 6 5 19 19 C 1.46904 * 111.00247 * 174.16246 * 18 17 6 20 20 C 1.50700 * 109.47192 * 66.04251 * 19 18 17 21 21 O 1.21293 * 119.99810 * 0.02562 * 20 19 18 22 22 N 1.34777 * 119.99675 * 180.28082 * 20 19 18 23 23 C 1.37102 * 119.99634 * 179.72687 * 22 20 19 24 24 H 1.08002 * 119.99868 * 359.97438 * 23 22 20 25 25 C 1.38945 * 119.99860 * 179.97438 * 23 22 20 26 26 N 1.31407 * 120.00134 * 179.97438 * 25 23 22 27 27 Si 1.86800 * 119.99887 * 0.02562 * 25 23 22 28 28 H 1.48500 * 109.47520 * 89.99803 * 27 25 23 29 29 H 1.48504 * 109.47004 * 209.99555 * 27 25 23 30 30 H 1.48497 * 109.47481 * 329.99259 * 27 25 23 31 31 H 1.08996 * 109.47647 * 300.02350 * 1 2 3 32 32 H 1.09008 * 109.47232 * 60.03061 * 1 2 3 33 33 H 1.09000 * 109.46886 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.50546 * 60.85727 * 4 2 1 35 35 H 1.09000 * 109.52773 * 300.76305 * 4 2 1 36 36 H 1.09004 * 109.52464 * 297.74820 * 5 4 2 37 37 H 1.09002 * 109.52417 * 177.55985 * 5 4 2 38 38 H 0.97006 * 119.99553 * 265.19490 * 8 6 5 39 39 H 1.08007 * 126.82738 * 0.02562 * 12 11 9 40 40 H 1.07997 * 125.57673 * 180.02562 * 13 12 11 41 41 H 1.07997 * 125.80485 * 180.29400 * 16 14 13 42 42 H 1.09006 * 109.46462 * 299.16400 * 17 6 5 43 43 H 1.09008 * 109.45554 * 179.19077 * 17 6 5 44 44 H 1.09009 * 109.46542 * 306.04282 * 19 18 17 45 45 H 1.08998 * 109.47050 * 186.04816 * 19 18 17 46 46 H 0.97001 * 120.00485 * 359.71840 * 22 20 19 47 47 H 0.97004 * 120.00488 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0400 -0.7208 -1.2500 5 6 3.5710 -0.7359 -1.2355 6 6 4.0548 -1.4186 0.0468 7 1 5.1440 -1.3944 0.0833 8 7 3.5949 -2.8095 0.0638 9 6 4.3141 -3.7648 -0.5577 10 8 5.3455 -3.4723 -1.1323 11 6 3.8521 -5.1629 -0.5401 12 6 4.5101 -6.3169 -1.1623 13 6 3.7381 -7.3841 -0.8912 14 7 2.6637 -6.9758 -0.1557 15 1 1.9586 -7.5589 0.1663 16 6 2.7254 -5.6487 0.0642 17 6 3.4864 -0.6776 1.2591 18 7 2.0193 -0.6917 1.1994 19 6 1.4372 -0.1105 2.4165 20 6 1.7791 1.3555 2.4863 21 8 2.4420 1.8661 1.6083 22 7 1.3525 2.0981 3.5271 23 6 1.6683 3.4306 3.5934 24 1 2.2592 3.8850 2.8119 25 6 1.2281 4.1963 4.6660 26 7 1.5312 5.4733 4.7299 27 14 0.2067 3.4100 6.0180 28 1 1.1060 2.8898 7.0790 29 1 -0.7098 4.4237 6.5992 30 1 -0.5884 2.2914 5.4508 31 1 -0.3634 0.5142 0.8897 32 1 -0.3634 0.5134 -0.8903 33 1 -0.3633 -1.0277 0.0005 34 1 1.6895 -0.1981 -2.1400 35 1 1.6660 -1.7446 -1.2583 36 1 3.9457 0.2873 -1.2671 37 1 3.9380 -1.2860 -2.1020 38 1 2.7725 -3.0427 0.5224 39 1 5.4318 -6.3107 -1.7253 40 1 3.9360 -8.3985 -1.2044 41 1 2.0065 -5.0666 0.6217 42 1 3.8402 0.3534 1.2533 43 1 3.8174 -1.1699 2.1736 44 1 1.8412 -0.6200 3.2914 45 1 0.3540 -0.2304 2.3942 46 1 0.8220 1.6898 4.2291 47 1 1.2242 6.0078 5.4789 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132053800.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:15 Heat of formation + Delta-G solvation = -41.542953 kcal Electronic energy + Delta-G solvation = -29478.612135 eV Core-core repulsion = 25468.075625 eV Total energy + Delta-G solvation = -4010.536510 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.97636 -41.42018 -40.13780 -38.77843 -36.16903 -35.47387 -33.88482 -33.62898 -32.66769 -31.47914 -29.86166 -29.17255 -27.57579 -26.19542 -24.20959 -23.97297 -22.35743 -21.51390 -21.25323 -20.76991 -20.42308 -19.79981 -19.42880 -17.72692 -17.39121 -16.96030 -16.82334 -16.46898 -16.18508 -15.89797 -15.59001 -15.27900 -15.07923 -14.95531 -14.75536 -14.56058 -14.42073 -14.28194 -13.95531 -13.82614 -13.61964 -13.36130 -13.04219 -12.99695 -12.85467 -12.81637 -12.53808 -12.40759 -12.24527 -11.99292 -11.73667 -11.59333 -11.31821 -11.08360 -10.99692 -10.88792 -10.19912 -10.02573 -9.63842 -9.21399 -8.98907 -8.41131 -6.01214 0.88977 1.30201 1.35800 1.44761 1.61819 1.95772 2.23343 2.32697 2.57676 2.69457 2.96409 3.00797 3.16489 3.78282 3.88964 4.04500 4.10711 4.16599 4.21015 4.27992 4.42375 4.46885 4.51692 4.58706 4.63956 4.68037 4.72547 4.81093 4.92159 4.95899 4.99421 5.06798 5.10482 5.15276 5.21104 5.23856 5.30425 5.53531 5.54107 5.67089 5.81676 5.94076 6.02963 6.04271 6.13563 6.59044 6.75302 6.88011 6.90517 7.41354 7.50259 7.98658 8.76555 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.020004 B = 0.002627 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.368461 B =10656.136704 C =11080.878193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.055 3.945 3 H 0.046 0.954 4 C -0.092 4.092 5 C -0.128 4.128 6 C 0.165 3.835 7 H 0.067 0.933 8 N -0.693 5.693 9 C 0.581 3.419 10 O -0.606 6.606 11 C -0.270 4.270 12 C -0.187 4.187 13 C -0.004 4.004 14 N -0.535 5.535 15 H 0.438 0.562 16 C 0.072 3.928 17 C 0.042 3.958 18 N -0.484 5.484 19 C 0.042 3.958 20 C 0.419 3.581 21 O -0.611 6.611 22 N -0.590 5.590 23 C -0.324 4.324 24 H 0.052 0.948 25 C -0.018 4.018 26 N -0.937 5.937 27 Si 0.965 3.035 28 H -0.259 1.259 29 H -0.279 1.279 30 H -0.226 1.226 31 H 0.044 0.956 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.051 0.949 37 H 0.057 0.943 38 H 0.416 0.584 39 H 0.128 0.872 40 H 0.202 0.798 41 H 0.205 0.795 42 H 0.042 0.958 43 H 0.088 0.912 44 H 0.123 0.877 45 H 0.127 0.873 46 H 0.389 0.611 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.627 -29.673 -5.033 30.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.053 4.053 3 H 0.064 0.936 4 C -0.130 4.130 5 C -0.167 4.167 6 C 0.059 3.941 7 H 0.085 0.915 8 N -0.344 5.344 9 C 0.372 3.628 10 O -0.489 6.489 11 C -0.281 4.281 12 C -0.211 4.211 13 C -0.132 4.132 14 N -0.131 5.131 15 H 0.278 0.722 16 C -0.066 4.066 17 C -0.087 4.087 18 N -0.207 5.207 19 C -0.089 4.089 20 C 0.207 3.793 21 O -0.497 6.497 22 N -0.231 5.231 23 C -0.454 4.454 24 H 0.070 0.930 25 C -0.217 4.217 26 N -0.578 5.578 27 Si 0.785 3.215 28 H -0.183 1.183 29 H -0.204 1.204 30 H -0.150 1.150 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.254 0.746 39 H 0.146 0.854 40 H 0.219 0.781 41 H 0.222 0.778 42 H 0.060 0.940 43 H 0.107 0.893 44 H 0.141 0.859 45 H 0.145 0.855 46 H 0.225 0.775 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.732 -29.541 -5.918 30.668 hybrid contribution -0.147 1.590 0.984 1.875 sum -5.880 -27.951 -4.934 28.986 Atomic orbital electron populations 1.21813 0.93348 1.02988 1.01342 1.21964 0.96082 0.97356 0.89934 0.93617 1.21458 0.93769 1.01354 0.96439 1.21876 0.97501 0.99658 0.97629 1.20670 0.97903 0.81155 0.94392 0.91463 1.45595 1.27449 1.06060 1.55346 1.17939 0.82514 0.85206 0.77166 1.90718 1.27060 1.83870 1.47283 1.20465 1.01733 0.92505 1.13351 1.22070 1.01742 0.91693 1.05634 1.22180 0.89575 1.00340 1.01115 1.41656 1.21727 1.07831 1.41868 0.72179 1.22346 0.98480 0.85036 1.00744 1.22398 0.88921 0.99466 0.97928 1.62508 1.06032 1.50947 1.01176 1.22392 1.03625 0.87243 0.95659 1.22383 0.83138 0.91398 0.82424 1.90478 1.43816 1.75101 1.40274 1.42254 1.49442 1.08632 1.22778 1.18975 1.32819 0.85159 1.08417 0.92958 1.26157 0.99028 0.95733 1.00752 1.69816 1.46985 1.07970 1.32989 0.85366 0.78703 0.79404 0.78053 1.18328 1.20404 1.14954 0.93728 0.92491 0.89691 0.91637 0.90026 0.93029 0.92421 0.74576 0.85380 0.78089 0.77786 0.93985 0.89320 0.85933 0.85511 0.77538 0.91292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 8.76 71.98 0.63 -2.62 16 2 C 0.05 1.57 1.95 44.94 0.09 1.66 16 3 H 0.05 1.82 5.36 -2.38 -0.01 1.81 16 4 C -0.09 -2.33 5.21 30.65 0.16 -2.17 16 5 C -0.13 -3.74 5.67 30.67 0.17 -3.56 16 6 C 0.16 4.65 2.81 45.04 0.13 4.78 16 7 H 0.07 2.19 7.58 -2.39 -0.02 2.17 16 8 N -0.69 -15.99 4.40 -445.70 -1.96 -17.94 16 9 C 0.58 16.26 7.78 86.62 0.67 16.93 16 10 O -0.61 -22.84 16.63 -4.14 -0.07 -22.91 16 11 C -0.27 -5.76 6.29 -19.04 -0.12 -5.88 16 12 C -0.19 -3.77 10.97 23.62 0.26 -3.51 16 13 C 0.00 -0.04 11.89 83.11 0.99 0.95 16 14 N -0.53 -3.69 5.90 -194.55 -1.15 -4.84 16 15 H 0.44 -0.44 8.96 -92.71 -0.83 -1.28 16 16 C 0.07 0.82 11.40 83.92 0.96 1.78 16 17 C 0.04 1.21 4.69 86.33 0.40 1.61 16 18 N -0.48 -12.33 4.17 -875.62 -3.65 -15.98 16 19 C 0.04 1.12 5.30 85.56 0.45 1.57 16 20 C 0.42 17.21 7.04 87.66 0.62 17.82 16 21 O -0.61 -30.84 11.20 -3.07 -0.03 -30.87 16 22 N -0.59 -26.24 5.09 -306.98 -1.56 -27.80 16 23 C -0.32 -18.46 10.16 84.04 0.85 -17.61 16 24 H 0.05 3.59 7.39 -2.91 -0.02 3.57 16 25 C -0.02 -1.00 5.50 84.93 0.47 -0.54 16 26 N -0.94 -56.18 13.96 21.66 0.30 -55.88 16 27 Si 0.96 37.78 27.74 68.60 1.90 39.68 16 28 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 29 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 30 H -0.23 -7.25 6.52 99.48 0.65 -6.60 16 31 H 0.04 1.15 6.24 -2.39 -0.01 1.14 16 32 H 0.06 1.32 8.14 -2.38 -0.02 1.31 16 33 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.08 1.76 7.73 -2.39 -0.02 1.74 16 36 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.42 7.17 7.12 -92.70 -0.66 6.51 16 39 H 0.13 2.88 8.06 -2.91 -0.02 2.85 16 40 H 0.20 0.70 8.06 -2.91 -0.02 0.68 16 41 H 0.21 0.89 7.45 -2.91 -0.02 0.87 16 42 H 0.04 1.62 6.00 -2.38 -0.01 1.60 16 43 H 0.09 2.28 8.06 -2.38 -0.02 2.26 16 44 H 0.12 2.54 8.06 -2.38 -0.02 2.52 16 45 H 0.13 2.69 6.32 -2.39 -0.02 2.67 16 46 H 0.39 14.21 5.76 -92.71 -0.53 13.67 16 47 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -85.53 372.40 -0.54 -86.07 By element: Atomic # 1 Polarization: 40.31 SS G_CDS: -1.05 Total: 39.26 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: 6.73 Total: 11.21 kcal Atomic # 7 Polarization: -114.42 SS G_CDS: -8.02 Total: -122.44 kcal Atomic # 8 Polarization: -53.68 SS G_CDS: -0.10 Total: -53.78 kcal Atomic # 14 Polarization: 37.78 SS G_CDS: 1.90 Total: 39.68 kcal Total: -85.53 -0.54 -86.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132053800.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.525 kcal (2) G-P(sol) polarization free energy of solvation -85.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds