Wall clock time and date at job start Tue Mar 31 2020 18:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 119.99618 * 2 1 4 4 O 1.45206 * 109.46771 * 135.00365 * 3 2 1 5 5 C 1.34230 * 116.99816 * 180.02562 * 4 3 2 6 6 O 1.20823 * 119.99908 * 359.97438 * 5 4 3 7 7 C 1.50695 * 119.99958 * 180.02562 * 5 4 3 8 8 H 1.09003 * 109.47271 * 39.99621 * 7 5 4 9 9 N 1.46894 * 109.47394 * 160.00021 * 7 5 4 10 10 C 1.53002 * 109.47073 * 280.00037 * 7 5 4 11 11 C 1.53001 * 109.47479 * 175.00130 * 10 7 5 12 12 C 1.52993 * 109.47340 * 179.97438 * 11 10 7 13 13 C 1.53003 * 109.47236 * 179.97438 * 12 11 10 14 14 N 1.46501 * 109.47161 * 179.97438 * 13 12 11 15 15 C 1.38823 * 119.99828 * 180.02562 * 14 13 12 16 16 C 1.39970 * 119.97109 * 0.02562 * 15 14 13 17 17 N 1.32126 * 120.31565 * 180.02562 * 16 15 14 18 18 C 1.31924 * 120.27355 * 0.02562 * 17 16 15 19 19 C 1.40683 * 119.93547 * 0.02562 * 18 17 16 20 20 C 1.41274 * 120.15566 * 179.97438 * 19 18 17 21 21 H 1.08001 * 119.99473 * 155.01671 * 20 19 18 22 22 C 1.40055 * 120.00194 * 334.74772 * 20 19 18 23 23 N 1.30730 * 119.99900 * 342.31305 * 22 20 19 24 24 Si 1.86803 * 120.00137 * 162.31322 * 22 20 19 25 25 H 1.48496 * 109.46932 * 94.52027 * 24 22 20 26 26 H 1.48494 * 109.47157 * 214.52251 * 24 22 20 27 27 H 1.48499 * 109.47069 * 334.52279 * 24 22 20 28 28 N 1.32238 * 119.96967 * 180.29849 * 15 14 13 29 29 H 1.07999 * 119.99994 * 179.97438 * 1 2 3 30 30 H 1.08000 * 120.00321 * 359.97438 * 1 2 3 31 31 H 1.07996 * 119.99846 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.47596 * 15.00414 * 3 2 1 33 33 H 1.08999 * 109.47247 * 255.00244 * 3 2 1 34 34 H 1.00900 * 111.00017 * 296.04461 * 9 7 5 35 35 H 1.00903 * 111.00629 * 59.99959 * 9 7 5 36 36 H 1.09003 * 109.47370 * 54.99596 * 10 7 5 37 37 H 1.09001 * 109.47188 * 295.00027 * 10 7 5 38 38 H 1.09003 * 109.47256 * 59.99396 * 11 10 7 39 39 H 1.09001 * 109.46826 * 300.00119 * 11 10 7 40 40 H 1.09003 * 109.47400 * 59.99533 * 12 11 10 41 41 H 1.09001 * 109.47297 * 299.99878 * 12 11 10 42 42 H 1.09009 * 109.46810 * 60.00063 * 13 12 11 43 43 H 1.09001 * 109.47186 * 300.00323 * 13 12 11 44 44 H 0.96999 * 119.99713 * 359.97438 * 14 13 12 45 45 H 1.08003 * 119.83847 * 0.02562 * 16 15 14 46 46 H 1.08001 * 120.02924 * 180.02562 * 18 17 16 47 47 H 0.97003 * 119.99589 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 8 3.1438 1.2402 0.9680 5 6 3.9165 2.3307 1.0928 6 8 3.6977 3.3069 0.4153 7 6 5.0576 2.3370 2.0770 8 1 5.5581 1.3688 2.0593 9 7 6.0145 3.3896 1.7106 10 6 4.5171 2.6060 3.4828 11 6 5.6557 2.4892 4.4981 12 6 5.1153 2.7589 5.9038 13 6 6.2538 2.6414 6.9192 14 7 5.7364 2.9002 8.2651 15 6 6.5904 2.8504 9.3585 16 6 7.9458 2.5534 9.1741 17 7 8.7645 2.5037 10.2099 18 6 8.3114 2.7332 11.4275 19 6 6.9509 3.0317 11.6256 20 6 6.4606 3.2777 12.9274 21 1 5.5741 3.8788 13.0658 22 6 7.1208 2.7374 14.0382 23 7 7.9588 1.7462 13.8821 24 14 6.8041 3.4331 15.7426 25 1 5.7477 2.6346 16.4147 26 1 8.0540 3.3729 16.5420 27 1 6.3585 4.8449 15.6261 28 7 6.1216 3.0783 10.5738 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5401 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3855 2.1161 0.2660 33 1 2.4754 1.4869 -0.9926 34 1 6.4342 3.2002 0.8128 35 1 5.5745 4.2976 1.7197 36 1 3.7425 1.8767 3.7200 37 1 4.0953 3.6103 3.5239 38 1 6.4303 3.2185 4.2609 39 1 6.0775 1.4850 4.4571 40 1 4.3405 2.0299 6.1413 41 1 4.6938 3.7633 5.9446 42 1 7.0289 3.3703 6.6819 43 1 6.6750 1.6369 6.8783 44 1 4.7973 3.1071 8.3922 45 1 8.3240 2.3639 8.1804 46 1 8.9842 2.6919 12.2713 47 1 8.4164 1.3723 14.6514 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159925337.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:53 Heat of formation + Delta-G solvation = -43.313297 kcal Electronic energy + Delta-G solvation = -26599.544956 eV Core-core repulsion = 22588.931678 eV Total energy + Delta-G solvation = -4010.613277 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.10570 -38.98852 -37.77545 -36.85353 -35.62954 -34.54600 -33.99552 -33.11399 -31.91471 -29.77476 -28.42637 -27.44657 -25.91235 -25.49113 -23.07760 -22.21302 -21.25502 -21.04479 -20.86521 -20.48319 -18.33119 -17.64098 -17.36504 -16.99345 -16.47608 -16.27508 -15.71446 -15.58328 -15.36455 -14.90685 -14.81697 -14.53178 -14.25171 -14.00418 -13.59834 -13.47432 -13.25127 -13.10691 -12.85217 -12.56765 -12.27378 -11.81928 -11.72369 -11.50977 -11.42457 -11.40567 -11.35561 -11.25846 -10.99522 -10.93812 -10.81345 -10.69827 -10.42300 -10.11131 -9.84046 -9.65751 -9.47425 -9.45472 -8.50081 -7.27300 -6.96114 -6.66830 -4.61856 1.40771 1.64777 2.37146 2.65653 3.03692 3.07145 3.11998 3.20959 3.81518 3.86144 3.95570 4.12714 4.35163 4.42634 4.46176 4.57839 4.60047 4.73632 4.84368 4.90638 4.98137 5.23093 5.29778 5.31355 5.48826 5.58647 5.73586 5.78226 5.87447 5.88965 5.92949 6.01275 6.01965 6.16022 6.24048 6.29360 6.31772 6.39829 6.54706 6.80853 6.93412 7.06099 7.16522 7.21375 7.76228 7.91065 8.24765 8.33096 8.55404 8.78908 9.41005 9.87545 10.03486 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022159 B = 0.001498 C = 0.001441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.292045 B =18690.586811 C =19429.603090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.161 4.161 3 C 0.092 3.908 4 O -0.351 6.351 5 C 0.429 3.571 6 O -0.515 6.515 7 C 0.104 3.896 8 H 0.120 0.880 9 N -0.809 5.809 10 C -0.106 4.106 11 C -0.105 4.105 12 C -0.130 4.130 13 C 0.139 3.861 14 N -0.737 5.737 15 C 0.370 3.630 16 C -0.156 4.156 17 N -0.419 5.419 18 C -0.040 4.040 19 C 0.265 3.735 20 C -0.427 4.427 21 H 0.089 0.911 22 C 0.077 3.923 23 N -0.780 5.780 24 Si 0.923 3.077 25 H -0.268 1.268 26 H -0.273 1.273 27 H -0.258 1.258 28 N -0.585 5.585 29 H 0.110 0.890 30 H 0.100 0.900 31 H 0.122 0.878 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.348 0.652 35 H 0.354 0.646 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.392 0.608 45 H 0.123 0.877 46 H 0.154 0.846 47 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.702 -2.223 -24.468 26.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.179 4.179 3 C 0.018 3.982 4 O -0.266 6.266 5 C 0.269 3.731 6 O -0.403 6.403 7 C -0.011 4.011 8 H 0.138 0.862 9 N -0.339 5.339 10 C -0.144 4.144 11 C -0.144 4.144 12 C -0.168 4.168 13 C 0.013 3.987 14 N -0.374 5.374 15 C 0.130 3.870 16 C -0.316 4.316 17 N -0.130 5.130 18 C -0.211 4.211 19 C 0.136 3.864 20 C -0.461 4.461 21 H 0.107 0.893 22 C -0.144 4.144 23 N -0.405 5.405 24 Si 0.746 3.254 25 H -0.193 1.193 26 H -0.197 1.197 27 H -0.181 1.181 28 N -0.313 5.313 29 H 0.128 0.872 30 H 0.118 0.882 31 H 0.140 0.860 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.161 0.839 35 H 0.168 0.832 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.226 0.774 45 H 0.140 0.860 46 H 0.171 0.829 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.073 -2.385 -24.142 25.901 hybrid contribution -1.329 0.395 -0.327 1.425 sum -10.402 -1.989 -24.469 26.662 Atomic orbital electron populations 1.23941 0.95426 1.02784 0.98226 1.22678 0.95726 0.97636 1.01847 1.22086 0.87289 0.96984 0.91848 1.86592 1.41462 1.41019 1.57563 1.25789 0.83561 0.80498 0.83207 1.90670 1.69947 1.34897 1.44829 1.21528 0.87551 0.99192 0.92818 0.86241 1.59179 1.32294 1.05208 1.37238 1.21584 0.99160 1.02942 0.90720 1.21385 0.97551 1.03177 0.92244 1.21772 0.98450 1.02414 0.94206 1.21125 0.95923 1.00393 0.81219 1.44127 1.10297 1.79808 1.03175 1.19258 0.88804 0.91330 0.87636 1.22011 0.90213 1.21694 0.97640 1.67705 1.37696 1.07846 0.99801 1.23448 0.95549 1.08776 0.93287 1.19071 0.89189 0.86754 0.91384 1.19330 1.10930 1.27418 0.88442 0.89342 1.26016 0.93174 0.92951 1.02274 1.69780 1.20364 1.16476 1.33923 0.86067 0.78859 0.80680 0.79809 1.19343 1.19736 1.18117 1.68429 1.37196 1.28400 0.97324 0.87170 0.88176 0.86016 0.90675 0.90334 0.83917 0.83179 0.90353 0.91175 0.89992 0.91380 0.91513 0.91479 0.92631 0.92716 0.77394 0.85956 0.82860 0.90187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.78 14.31 29.01 0.42 -0.36 16 2 C -0.16 -0.92 9.90 -36.03 -0.36 -1.28 16 3 C 0.09 0.65 5.88 36.00 0.21 0.86 16 4 O -0.35 -2.97 10.20 -39.26 -0.40 -3.37 16 5 C 0.43 3.72 7.19 36.00 0.26 3.98 16 6 O -0.52 -5.65 16.00 -18.75 -0.30 -5.95 16 7 C 0.10 0.71 3.26 -68.87 -0.22 0.48 16 8 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 9 N -0.81 -5.39 8.44 -5.66 -0.05 -5.44 16 10 C -0.11 -0.76 4.84 -26.73 -0.13 -0.89 16 11 C -0.11 -0.86 5.10 -26.73 -0.14 -1.00 16 12 C -0.13 -1.32 5.33 -26.73 -0.14 -1.47 16 13 C 0.14 1.94 4.90 -4.04 -0.02 1.92 16 14 N -0.74 -13.61 5.72 -60.27 -0.34 -13.95 16 15 C 0.37 8.90 7.66 -155.02 -1.19 7.71 16 16 C -0.16 -3.82 10.50 -16.78 -0.18 -3.99 16 17 N -0.42 -11.28 10.47 -12.11 -0.13 -11.40 16 18 C -0.04 -1.11 9.87 -16.59 -0.16 -1.27 16 19 C 0.26 7.49 6.40 -84.83 -0.54 6.94 16 20 C -0.43 -11.49 9.28 -37.75 -0.35 -11.84 16 21 H 0.09 2.32 7.91 -52.49 -0.42 1.90 16 22 C 0.08 1.90 5.13 -17.34 -0.09 1.81 16 23 N -0.78 -19.78 10.99 55.55 0.61 -19.17 16 24 Si 0.92 18.09 29.60 -169.99 -5.03 13.06 16 25 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 26 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 27 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 28 N -0.59 -15.85 10.49 -10.14 -0.11 -15.96 16 29 H 0.11 0.37 8.06 -52.49 -0.42 -0.05 16 30 H 0.10 0.41 7.90 -52.49 -0.41 -0.01 16 31 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 32 H 0.07 0.53 7.85 -51.93 -0.41 0.13 16 33 H 0.08 0.53 8.13 -51.93 -0.42 0.10 16 34 H 0.35 1.96 9.06 -39.29 -0.36 1.60 16 35 H 0.35 2.47 8.58 -39.29 -0.34 2.13 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.72 7.75 -51.93 -0.40 0.32 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.79 7.93 -51.92 -0.41 0.38 16 43 H 0.05 0.78 7.94 -51.93 -0.41 0.37 16 44 H 0.39 6.79 8.60 -40.82 -0.35 6.44 16 45 H 0.12 2.62 6.70 -52.48 -0.35 2.27 16 46 H 0.15 4.28 6.20 -52.49 -0.33 3.95 16 47 H 0.29 6.50 8.29 -40.82 -0.34 6.16 16 LS Contribution 400.61 15.07 6.04 6.04 Total: -1.00 -32.24 400.61 -9.47 -41.71 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -7.12 Total: 12.84 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -2.63 Total: 1.61 kcal Atomic # 7 Polarization: -65.91 SS G_CDS: -0.02 Total: -65.92 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: -0.70 Total: -9.33 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.06 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.24 -9.47 -41.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159925337.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.604 kcal (2) G-P(sol) polarization free energy of solvation -32.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds