Wall clock time and date at job start Tue Mar 31 2020 18:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 119.99618 * 2 1 4 4 O 1.45206 * 109.46771 * 135.00365 * 3 2 1 5 5 C 1.34230 * 116.99816 * 180.02562 * 4 3 2 6 6 O 1.20823 * 119.99908 * 359.97438 * 5 4 3 7 7 C 1.50695 * 119.99958 * 180.02562 * 5 4 3 8 8 H 1.09003 * 109.47271 * 39.99621 * 7 5 4 9 9 N 1.46894 * 109.47394 * 160.00021 * 7 5 4 10 10 C 1.53002 * 109.47073 * 280.00037 * 7 5 4 11 11 C 1.53001 * 109.47479 * 175.00130 * 10 7 5 12 12 C 1.52993 * 109.47340 * 179.97438 * 11 10 7 13 13 C 1.53003 * 109.47236 * 179.97438 * 12 11 10 14 14 N 1.46501 * 109.47161 * 179.97438 * 13 12 11 15 15 C 1.38823 * 119.99828 * 180.02562 * 14 13 12 16 16 C 1.39970 * 119.97109 * 0.02562 * 15 14 13 17 17 N 1.32126 * 120.31565 * 180.02562 * 16 15 14 18 18 C 1.31924 * 120.27355 * 0.02562 * 17 16 15 19 19 C 1.40683 * 119.93547 * 0.02562 * 18 17 16 20 20 C 1.41274 * 120.15566 * 179.97438 * 19 18 17 21 21 H 1.08001 * 119.99473 * 155.01671 * 20 19 18 22 22 C 1.40055 * 120.00194 * 334.74772 * 20 19 18 23 23 N 1.30730 * 119.99900 * 342.31305 * 22 20 19 24 24 Si 1.86803 * 120.00137 * 162.31322 * 22 20 19 25 25 H 1.48496 * 109.46932 * 94.52027 * 24 22 20 26 26 H 1.48494 * 109.47157 * 214.52251 * 24 22 20 27 27 H 1.48499 * 109.47069 * 334.52279 * 24 22 20 28 28 N 1.32238 * 119.96967 * 180.29849 * 15 14 13 29 29 H 1.07999 * 119.99994 * 179.97438 * 1 2 3 30 30 H 1.08000 * 120.00321 * 359.97438 * 1 2 3 31 31 H 1.07996 * 119.99846 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.47596 * 15.00414 * 3 2 1 33 33 H 1.08999 * 109.47247 * 255.00244 * 3 2 1 34 34 H 1.00900 * 111.00017 * 296.04461 * 9 7 5 35 35 H 1.00903 * 111.00629 * 59.99959 * 9 7 5 36 36 H 1.09003 * 109.47370 * 54.99596 * 10 7 5 37 37 H 1.09001 * 109.47188 * 295.00027 * 10 7 5 38 38 H 1.09003 * 109.47256 * 59.99396 * 11 10 7 39 39 H 1.09001 * 109.46826 * 300.00119 * 11 10 7 40 40 H 1.09003 * 109.47400 * 59.99533 * 12 11 10 41 41 H 1.09001 * 109.47297 * 299.99878 * 12 11 10 42 42 H 1.09009 * 109.46810 * 60.00063 * 13 12 11 43 43 H 1.09001 * 109.47186 * 300.00323 * 13 12 11 44 44 H 0.96999 * 119.99713 * 359.97438 * 14 13 12 45 45 H 1.08003 * 119.83847 * 0.02562 * 16 15 14 46 46 H 1.08001 * 120.02924 * 180.02562 * 18 17 16 47 47 H 0.97003 * 119.99589 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 8 3.1438 1.2402 0.9680 5 6 3.9165 2.3307 1.0928 6 8 3.6977 3.3069 0.4153 7 6 5.0576 2.3370 2.0770 8 1 5.5581 1.3688 2.0593 9 7 6.0145 3.3896 1.7106 10 6 4.5171 2.6060 3.4828 11 6 5.6557 2.4892 4.4981 12 6 5.1153 2.7589 5.9038 13 6 6.2538 2.6414 6.9192 14 7 5.7364 2.9002 8.2651 15 6 6.5904 2.8504 9.3585 16 6 7.9458 2.5534 9.1741 17 7 8.7645 2.5037 10.2099 18 6 8.3114 2.7332 11.4275 19 6 6.9509 3.0317 11.6256 20 6 6.4606 3.2777 12.9274 21 1 5.5741 3.8788 13.0658 22 6 7.1208 2.7374 14.0382 23 7 7.9588 1.7462 13.8821 24 14 6.8041 3.4331 15.7426 25 1 5.7477 2.6346 16.4147 26 1 8.0540 3.3729 16.5420 27 1 6.3585 4.8449 15.6261 28 7 6.1216 3.0783 10.5738 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5401 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3855 2.1161 0.2660 33 1 2.4754 1.4869 -0.9926 34 1 6.4342 3.2002 0.8128 35 1 5.5745 4.2976 1.7197 36 1 3.7425 1.8767 3.7200 37 1 4.0953 3.6103 3.5239 38 1 6.4303 3.2185 4.2609 39 1 6.0775 1.4850 4.4571 40 1 4.3405 2.0299 6.1413 41 1 4.6938 3.7633 5.9446 42 1 7.0289 3.3703 6.6819 43 1 6.6750 1.6369 6.8783 44 1 4.7973 3.1071 8.3922 45 1 8.3240 2.3639 8.1804 46 1 8.9842 2.6919 12.2713 47 1 8.4164 1.3723 14.6514 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159925337.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:52 Heat of formation + Delta-G solvation = -65.220243 kcal Electronic energy + Delta-G solvation = -26600.494912 eV Core-core repulsion = 22588.931678 eV Total energy + Delta-G solvation = -4011.563234 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.76623 -40.90842 -38.44020 -37.84129 -36.75600 -35.78516 -34.99845 -34.48506 -33.53478 -31.10010 -29.55307 -28.24148 -27.83966 -26.32579 -24.35665 -23.91675 -22.80084 -21.93293 -21.55524 -20.94569 -19.53492 -18.96901 -18.12816 -17.97691 -17.60175 -17.34866 -17.08366 -16.84266 -16.51831 -16.44584 -16.00756 -15.48331 -15.36213 -14.91689 -14.84356 -14.76856 -14.09273 -13.97094 -13.82389 -13.54083 -13.38039 -13.21968 -13.01781 -12.85460 -12.69244 -12.48864 -12.22884 -12.13839 -12.01145 -12.00178 -11.94182 -11.75937 -11.70757 -11.66719 -11.41924 -11.20012 -10.53474 -10.34287 -10.02194 -9.29193 -8.82759 -8.46312 -6.63911 0.75906 0.95341 1.00605 1.13866 1.42680 1.54267 1.61262 1.83385 2.19888 2.47763 2.68161 3.32459 3.59237 3.76533 3.78382 3.87313 3.96490 3.98058 4.04654 4.22046 4.22841 4.24812 4.37868 4.43879 4.51314 4.54889 4.59372 4.75035 4.85707 4.88244 4.94081 5.00544 5.04458 5.06521 5.16965 5.26505 5.29120 5.44163 5.55049 5.56625 5.61435 5.75839 5.87821 6.10542 6.29947 6.33141 6.50581 6.57316 6.66971 6.94430 7.41443 7.88997 8.19666 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.022159 B = 0.001498 C = 0.001441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.292045 B =18690.586811 C =19429.603090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.176 4.176 3 C 0.087 3.913 4 O -0.356 6.356 5 C 0.431 3.569 6 O -0.542 6.542 7 C 0.109 3.891 8 H 0.135 0.865 9 N -0.810 5.810 10 C -0.101 4.101 11 C -0.097 4.097 12 C -0.119 4.119 13 C 0.132 3.868 14 N -0.722 5.722 15 C 0.370 3.630 16 C -0.163 4.163 17 N -0.429 5.429 18 C -0.075 4.075 19 C 0.239 3.761 20 C -0.456 4.456 21 H 0.085 0.915 22 C 0.040 3.960 23 N -0.807 5.807 24 Si 1.003 2.997 25 H -0.259 1.259 26 H -0.258 1.258 27 H -0.256 1.256 28 N -0.612 5.612 29 H 0.125 0.875 30 H 0.104 0.896 31 H 0.127 0.873 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.353 0.647 35 H 0.352 0.648 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.399 0.601 45 H 0.154 0.846 46 H 0.143 0.857 47 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.559 -2.584 -24.857 27.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.194 4.194 3 C 0.014 3.986 4 O -0.271 6.271 5 C 0.273 3.727 6 O -0.432 6.432 7 C -0.006 4.006 8 H 0.153 0.847 9 N -0.340 5.340 10 C -0.139 4.139 11 C -0.135 4.135 12 C -0.157 4.157 13 C 0.009 3.991 14 N -0.358 5.358 15 C 0.127 3.873 16 C -0.324 4.324 17 N -0.141 5.141 18 C -0.244 4.244 19 C 0.111 3.889 20 C -0.489 4.489 21 H 0.104 0.896 22 C -0.179 4.179 23 N -0.432 5.432 24 Si 0.821 3.179 25 H -0.183 1.183 26 H -0.182 1.182 27 H -0.180 1.180 28 N -0.342 5.342 29 H 0.143 0.857 30 H 0.122 0.878 31 H 0.145 0.855 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.167 0.833 35 H 0.166 0.834 36 H 0.102 0.898 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.234 0.766 45 H 0.171 0.829 46 H 0.160 0.840 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.929 -2.768 -24.565 26.640 hybrid contribution -1.128 0.453 -0.386 1.275 sum -11.057 -2.315 -24.951 27.389 Atomic orbital electron populations 1.24156 0.95147 1.03752 0.96449 1.22691 0.96109 0.97130 1.03455 1.22205 0.87046 0.97793 0.91554 1.86594 1.41717 1.40929 1.57834 1.26176 0.83562 0.80023 0.82967 1.90657 1.70715 1.35824 1.46046 1.21585 0.86969 0.99940 0.92061 0.84739 1.59212 1.32012 1.05120 1.37661 1.21511 0.98871 1.02956 0.90551 1.21292 0.97643 1.03518 0.91027 1.21693 0.97095 1.02866 0.94042 1.21439 0.97576 1.00503 0.79632 1.44338 1.10084 1.78022 1.03365 1.19595 0.89689 0.89863 0.88137 1.22504 0.90491 1.21198 0.98252 1.67638 1.38595 1.07811 1.00085 1.23227 0.95548 1.12141 0.93511 1.19391 0.89621 0.87443 0.92431 1.19631 1.11710 1.28373 0.89236 0.89647 1.27005 0.92228 0.92544 1.06136 1.69808 1.20423 1.16995 1.35940 0.84891 0.79379 0.79681 0.73904 1.18298 1.18205 1.17980 1.68488 1.37474 1.29969 0.98295 0.85663 0.87759 0.85512 0.91032 0.90415 0.83288 0.83410 0.89813 0.91547 0.90337 0.90586 0.90913 0.91195 0.92406 0.92409 0.76633 0.82919 0.83963 0.88932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 14.31 67.78 0.97 -0.27 16 2 C -0.18 -1.83 9.90 25.64 0.25 -1.58 16 3 C 0.09 1.19 5.88 71.24 0.42 1.61 16 4 O -0.36 -5.68 10.20 -51.42 -0.52 -6.21 16 5 C 0.43 7.04 7.19 71.23 0.51 7.55 16 6 O -0.54 -11.66 16.00 21.97 0.35 -11.31 16 7 C 0.11 1.30 3.26 44.17 0.14 1.44 16 8 H 0.14 1.23 8.14 -2.39 -0.02 1.21 16 9 N -0.81 -9.60 8.44 -171.81 -1.45 -11.05 16 10 C -0.10 -1.24 4.84 30.60 0.15 -1.09 16 11 C -0.10 -1.33 5.10 30.59 0.16 -1.18 16 12 C -0.12 -2.12 5.33 30.59 0.16 -1.96 16 13 C 0.13 3.42 4.90 86.38 0.42 3.84 16 14 N -0.72 -25.72 5.72 -344.60 -1.97 -27.69 16 15 C 0.37 17.75 7.66 133.38 1.02 18.77 16 16 C -0.16 -7.93 10.50 85.07 0.89 -7.04 16 17 N -0.43 -23.51 10.47 -192.22 -2.01 -25.52 16 18 C -0.08 -4.35 9.87 85.28 0.84 -3.50 16 19 C 0.24 13.92 6.40 40.15 0.26 14.18 16 20 C -0.46 -25.15 9.28 23.46 0.22 -24.93 16 21 H 0.09 4.59 7.91 -2.91 -0.02 4.57 16 22 C 0.04 1.98 5.13 85.30 0.44 2.42 16 23 N -0.81 -41.41 10.99 21.84 0.24 -41.17 16 24 Si 1.00 36.60 29.60 68.60 2.03 38.63 16 25 H -0.26 -9.00 7.11 99.48 0.71 -8.30 16 26 H -0.26 -8.76 7.11 99.48 0.71 -8.05 16 27 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16 28 N -0.61 -33.74 10.49 -185.99 -1.95 -35.69 16 29 H 0.13 0.59 8.06 -2.91 -0.02 0.57 16 30 H 0.10 0.71 7.90 -2.91 -0.02 0.69 16 31 H 0.13 1.16 8.06 -2.91 -0.02 1.13 16 32 H 0.07 1.00 7.85 -2.39 -0.02 0.98 16 33 H 0.08 1.03 8.13 -2.39 -0.02 1.01 16 34 H 0.35 3.53 9.06 -89.69 -0.81 2.72 16 35 H 0.35 4.53 8.58 -89.69 -0.77 3.76 16 36 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.08 1.18 7.75 -2.39 -0.02 1.16 16 39 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.06 1.51 7.93 -2.38 -0.02 1.49 16 43 H 0.06 1.50 7.94 -2.39 -0.02 1.49 16 44 H 0.40 13.27 8.60 -92.71 -0.80 12.48 16 45 H 0.15 6.31 6.70 -2.91 -0.02 6.29 16 46 H 0.14 8.31 6.20 -2.91 -0.02 8.29 16 47 H 0.30 13.52 8.29 -92.71 -0.77 12.75 16 Total: -1.00 -71.02 400.61 0.20 -70.82 By element: Atomic # 1 Polarization: 42.30 SS G_CDS: -1.37 Total: 40.93 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: 6.86 Total: 8.26 kcal Atomic # 7 Polarization: -133.97 SS G_CDS: -7.14 Total: -141.12 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.17 Total: -17.51 kcal Atomic # 14 Polarization: 36.60 SS G_CDS: 2.03 Total: 38.63 kcal Total: -71.02 0.20 -70.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159925337.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.595 kcal (2) G-P(sol) polarization free energy of solvation -71.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds