Wall clock time and date at job start Tue Mar 31 2020 18:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50701 * 119.99842 * 2 1 4 4 O 1.45202 * 109.47132 * 134.99459 * 3 2 1 5 5 C 1.34229 * 117.00064 * 179.97438 * 4 3 2 6 6 O 1.20823 * 119.99894 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.00026 * 180.02562 * 5 4 3 8 8 H 1.08998 * 109.47307 * 39.99486 * 7 5 4 9 9 N 1.46897 * 109.47332 * 160.00143 * 7 5 4 10 10 C 1.53009 * 109.46921 * 279.99505 * 7 5 4 11 11 C 1.52990 * 109.47228 * 175.00079 * 10 7 5 12 12 C 1.52995 * 109.47372 * 180.02562 * 11 10 7 13 13 C 1.52998 * 109.47620 * 180.02562 * 12 11 10 14 14 N 1.46499 * 109.47574 * 179.97438 * 13 12 11 15 15 C 1.38804 * 120.00247 * 180.02562 * 14 13 12 16 16 C 1.40081 * 120.75769 * 180.02562 * 15 14 13 17 17 N 1.31668 * 119.13739 * 180.02562 * 16 15 14 18 18 C 1.33595 * 120.78831 * 359.97438 * 17 16 15 19 19 C 1.41153 * 119.16706 * 180.02562 * 18 17 16 20 20 H 1.07999 * 120.00184 * 359.97438 * 19 18 17 21 21 C 1.40045 * 119.99823 * 180.02562 * 19 18 17 22 22 N 1.30730 * 120.00049 * 359.72575 * 21 19 18 23 23 Si 1.86795 * 119.99981 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47274 * 90.00237 * 23 21 19 25 25 H 1.48504 * 109.47383 * 209.99909 * 23 21 19 26 26 H 1.48502 * 109.47297 * 329.99872 * 23 21 19 27 27 N 1.33599 * 121.65831 * 0.27830 * 18 17 16 28 28 C 1.31651 * 120.79256 * 359.43897 * 27 18 17 29 29 H 1.08004 * 119.99872 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.00059 * 179.97438 * 1 2 3 31 31 H 1.07996 * 120.00222 * 179.97438 * 2 1 3 32 32 H 1.08999 * 109.47623 * 14.99646 * 3 2 1 33 33 H 1.09001 * 109.47105 * 254.99611 * 3 2 1 34 34 H 1.00901 * 110.99920 * 59.99015 * 9 7 5 35 35 H 1.00900 * 111.00320 * 183.94970 * 9 7 5 36 36 H 1.09010 * 109.46562 * 54.99889 * 10 7 5 37 37 H 1.08997 * 109.46884 * 295.00595 * 10 7 5 38 38 H 1.09002 * 109.47658 * 60.00113 * 11 10 7 39 39 H 1.09006 * 109.47029 * 300.00105 * 11 10 7 40 40 H 1.09003 * 109.47442 * 59.99519 * 12 11 10 41 41 H 1.09006 * 109.46800 * 299.99842 * 12 11 10 42 42 H 1.08997 * 109.46847 * 59.99675 * 13 12 11 43 43 H 1.08998 * 109.47051 * 300.00059 * 13 12 11 44 44 H 0.97000 * 120.00052 * 0.02562 * 14 13 12 45 45 H 1.07995 * 120.43433 * 359.97438 * 16 15 14 46 46 H 0.97000 * 120.00283 * 180.02562 * 22 21 19 47 47 H 1.08001 * 120.43562 * 180.25207 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1437 1.2404 0.9681 5 6 3.9171 2.3304 1.0921 6 8 3.6989 3.3062 0.4138 7 6 5.0582 2.3368 2.0765 8 1 5.5580 1.3683 2.0596 9 7 6.0157 3.3885 1.7094 10 6 4.5176 2.6074 3.4821 11 6 5.6560 2.4906 4.4975 12 6 5.1154 2.7605 5.9031 13 6 6.2539 2.6445 6.9185 14 7 5.7364 2.9035 8.2643 15 6 6.5903 2.8549 9.3576 16 6 6.1122 3.0994 10.6514 17 7 6.9504 3.0454 11.6654 18 6 8.2413 2.7613 11.4712 19 6 9.1096 2.7118 12.5829 20 1 8.7280 2.9028 13.5751 21 6 10.4661 2.4161 12.3993 22 7 10.9271 2.1806 11.1989 23 14 11.6151 2.3499 13.8706 24 1 11.6432 0.9686 14.4150 25 1 12.9833 2.7435 13.4483 26 1 11.1322 3.2851 14.9183 27 7 8.7319 2.5277 10.2507 28 6 7.9496 2.5597 9.1923 29 1 -0.5400 0.9354 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3855 2.1162 0.2659 33 1 2.4756 1.4868 -0.9926 34 1 5.5761 4.2967 1.7176 35 1 6.8219 3.3714 2.3160 36 1 3.7425 1.8786 3.7197 37 1 4.0964 3.6119 3.5222 38 1 6.4311 3.2193 4.2599 39 1 6.0771 1.4860 4.4573 40 1 4.3405 2.0317 6.1405 41 1 4.6940 3.7650 5.9435 42 1 7.0284 3.3736 6.6808 43 1 6.6758 1.6402 6.8781 44 1 4.7970 3.1091 8.3915 45 1 5.0700 3.3300 10.8150 46 1 11.8666 1.9755 11.0717 47 1 8.3516 2.3660 8.2088 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171069747.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:59 Heat of formation + Delta-G solvation = -25.695796 kcal Electronic energy + Delta-G solvation = -26638.025097 eV Core-core repulsion = 22628.175772 eV Total energy + Delta-G solvation = -4009.849325 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.97922 -38.99262 -37.84698 -36.89827 -35.71366 -34.51311 -33.68435 -32.76832 -31.69905 -29.86897 -28.62948 -27.61128 -26.10071 -24.82836 -23.48755 -22.40093 -21.29682 -21.04556 -20.81777 -20.45972 -18.40550 -17.79047 -17.35594 -16.79190 -16.37775 -16.08125 -15.70421 -15.56168 -15.24828 -15.14166 -14.48568 -14.38535 -14.34639 -14.01397 -13.86320 -13.49941 -13.14608 -13.03849 -12.77093 -12.61662 -12.41965 -11.91849 -11.84530 -11.69203 -11.65065 -11.33031 -11.26897 -11.21735 -11.17290 -10.92300 -10.72697 -10.54934 -10.18671 -10.04164 -9.78719 -9.38326 -9.25971 -9.16434 -8.90207 -7.25475 -6.77355 -6.39696 -4.36252 1.42329 1.79809 2.34779 2.75256 2.92084 3.13427 3.17418 3.21574 3.94445 4.00416 4.11505 4.18748 4.38523 4.42303 4.48308 4.49616 4.68692 4.77646 4.82211 4.82442 4.94341 5.12530 5.19699 5.25455 5.34377 5.44022 5.60275 5.65442 5.78331 5.81584 5.94003 5.95249 5.95691 5.99636 6.05532 6.12024 6.14761 6.29252 6.48840 6.51073 6.92427 7.10165 7.17079 7.36246 7.39648 8.15072 8.29023 8.51249 8.58489 8.75867 9.22751 10.25111 10.40960 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.024268 B = 0.001491 C = 0.001453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.497474 B =18775.512554 C =19266.956207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.159 4.159 3 C 0.094 3.906 4 O -0.353 6.353 5 C 0.470 3.530 6 O -0.499 6.499 7 C 0.104 3.896 8 H 0.118 0.882 9 N -0.831 5.831 10 C -0.150 4.150 11 C -0.115 4.115 12 C -0.127 4.127 13 C 0.138 3.862 14 N -0.754 5.754 15 C -0.041 4.041 16 C 0.102 3.898 17 N -0.567 5.567 18 C 0.368 3.632 19 C -0.414 4.414 20 H 0.088 0.912 21 C 0.069 3.931 22 N -0.726 5.726 23 Si 0.914 3.086 24 H -0.270 1.270 25 H -0.277 1.277 26 H -0.261 1.261 27 N -0.475 5.475 28 C 0.101 3.899 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.122 0.878 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.353 0.647 35 H 0.359 0.641 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.046 0.954 43 H 0.047 0.953 44 H 0.384 0.616 45 H 0.125 0.875 46 H 0.271 0.729 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.252 -2.823 -21.856 26.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.177 4.177 3 C 0.021 3.979 4 O -0.270 6.270 5 C 0.311 3.689 6 O -0.385 6.385 7 C -0.009 4.009 8 H 0.136 0.864 9 N -0.366 5.366 10 C -0.190 4.190 11 C -0.153 4.153 12 C -0.165 4.165 13 C 0.013 3.987 14 N -0.391 5.391 15 C -0.146 4.146 16 C -0.073 4.073 17 N -0.285 5.285 18 C 0.127 3.873 19 C -0.451 4.451 20 H 0.107 0.893 21 C -0.156 4.156 22 N -0.350 5.350 23 Si 0.738 3.262 24 H -0.195 1.195 25 H -0.202 1.202 26 H -0.185 1.185 27 N -0.192 5.192 28 C -0.076 4.076 29 H 0.118 0.882 30 H 0.128 0.872 31 H 0.140 0.860 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.167 0.833 35 H 0.175 0.825 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.217 0.783 45 H 0.143 0.857 46 H 0.082 0.918 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -13.264 -3.041 -22.183 26.024 hybrid contribution -0.787 0.477 0.507 1.050 sum -14.050 -2.564 -21.676 25.958 Atomic orbital electron populations 1.23932 0.95417 1.02748 0.98411 1.22686 0.95698 0.97688 1.01673 1.22071 0.87036 0.96893 0.91904 1.86515 1.41700 1.40901 1.57891 1.23640 0.82382 0.80521 0.82339 1.90659 1.69178 1.34935 1.43727 1.21013 0.90262 0.99438 0.90235 0.86374 1.58557 1.09966 1.07820 1.60252 1.22361 0.99959 1.03385 0.93251 1.21509 0.97223 1.02852 0.93758 1.21709 0.98733 1.02273 0.93737 1.20995 0.95469 0.99760 0.82521 1.43518 1.09205 1.83495 1.02904 1.19199 0.93225 1.13263 0.88876 1.22184 0.98343 0.99408 0.87345 1.68551 1.05232 1.21563 1.33199 1.19816 0.86217 0.90657 0.90591 1.19090 0.91432 1.41290 0.93293 0.89348 1.25998 0.98969 0.93772 0.96873 1.70144 1.14581 1.28480 1.21804 0.86223 0.78921 0.79463 0.81553 1.19480 1.20228 1.18521 1.69274 1.35208 1.16695 0.98033 1.22679 0.88123 0.98327 0.98467 0.88174 0.87217 0.86011 0.90655 0.90112 0.83292 0.82471 0.90090 0.91060 0.91509 0.90824 0.91401 0.91624 0.93549 0.93458 0.78310 0.85721 0.91770 0.85736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.77 14.31 29.01 0.42 -0.35 16 2 C -0.16 -0.91 9.90 -36.03 -0.36 -1.27 16 3 C 0.09 0.68 5.88 36.01 0.21 0.90 16 4 O -0.35 -3.12 10.20 -39.26 -0.40 -3.52 16 5 C 0.47 4.48 7.21 36.01 0.26 4.74 16 6 O -0.50 -6.06 16.00 -18.75 -0.30 -6.36 16 7 C 0.10 0.75 3.32 -68.86 -0.23 0.52 16 8 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 9 N -0.83 -6.13 8.93 -5.65 -0.05 -6.18 16 10 C -0.15 -0.98 4.84 -26.73 -0.13 -1.11 16 11 C -0.12 -0.80 4.98 -26.74 -0.13 -0.93 16 12 C -0.13 -1.13 5.33 -26.73 -0.14 -1.27 16 13 C 0.14 1.77 4.94 -4.04 -0.02 1.75 16 14 N -0.75 -12.03 5.71 -58.23 -0.33 -12.36 16 15 C -0.04 -0.87 6.72 -83.32 -0.56 -1.43 16 16 C 0.10 2.31 11.20 -16.93 -0.19 2.12 16 17 N -0.57 -15.19 10.34 -12.49 -0.13 -15.32 16 18 C 0.37 10.60 7.35 -158.23 -1.16 9.44 16 19 C -0.41 -11.66 9.35 -37.80 -0.35 -12.02 16 20 H 0.09 2.40 7.85 -52.49 -0.41 1.99 16 21 C 0.07 1.79 5.50 -17.34 -0.10 1.69 16 22 N -0.73 -19.57 11.41 55.55 0.63 -18.93 16 23 Si 0.91 19.08 29.56 -169.99 -5.02 14.06 16 24 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 25 H -0.28 -5.61 7.11 56.52 0.40 -5.20 16 26 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 27 N -0.48 -13.26 7.84 -12.49 -0.10 -13.36 16 28 C 0.10 2.40 10.58 -16.94 -0.18 2.22 16 29 H 0.10 0.39 7.90 -52.48 -0.41 -0.02 16 30 H 0.11 0.36 8.06 -52.49 -0.42 -0.06 16 31 H 0.12 0.63 8.06 -52.49 -0.42 0.20 16 32 H 0.08 0.53 7.85 -51.93 -0.41 0.12 16 33 H 0.08 0.57 8.13 -51.93 -0.42 0.15 16 34 H 0.35 2.67 8.58 -39.29 -0.34 2.33 16 35 H 0.36 2.06 7.55 -39.29 -0.30 1.76 16 36 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.43 6.87 -51.93 -0.36 0.07 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.05 0.63 7.98 -51.93 -0.41 0.21 16 43 H 0.05 0.64 7.99 -51.93 -0.41 0.23 16 44 H 0.38 5.33 8.50 -40.82 -0.35 4.98 16 45 H 0.13 2.39 8.06 -52.49 -0.42 1.97 16 46 H 0.27 6.59 8.29 -40.82 -0.34 6.26 16 47 H 0.13 2.63 6.88 -52.49 -0.36 2.27 16 LS Contribution 400.12 15.07 6.03 6.03 Total: -1.00 -33.44 400.12 -9.46 -42.90 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -7.12 Total: 8.04 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: -2.67 Total: 5.00 kcal Atomic # 7 Polarization: -66.18 SS G_CDS: 0.02 Total: -66.15 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: -0.70 Total: -9.88 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.02 Total: 14.06 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.44 -9.46 -42.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171069747.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.206 kcal (2) G-P(sol) polarization free energy of solvation -33.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds