Wall clock time and date at job start Tue Mar 31 2020 18:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50701 * 119.99842 * 2 1 4 4 O 1.45202 * 109.47132 * 134.99459 * 3 2 1 5 5 C 1.34229 * 117.00064 * 179.97438 * 4 3 2 6 6 O 1.20823 * 119.99894 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.00026 * 180.02562 * 5 4 3 8 8 H 1.08998 * 109.47307 * 39.99486 * 7 5 4 9 9 N 1.46897 * 109.47332 * 160.00143 * 7 5 4 10 10 C 1.53009 * 109.46921 * 279.99505 * 7 5 4 11 11 C 1.52990 * 109.47228 * 175.00079 * 10 7 5 12 12 C 1.52995 * 109.47372 * 180.02562 * 11 10 7 13 13 C 1.52998 * 109.47620 * 180.02562 * 12 11 10 14 14 N 1.46499 * 109.47574 * 179.97438 * 13 12 11 15 15 C 1.38804 * 120.00247 * 180.02562 * 14 13 12 16 16 C 1.40081 * 120.75769 * 180.02562 * 15 14 13 17 17 N 1.31668 * 119.13739 * 180.02562 * 16 15 14 18 18 C 1.33595 * 120.78831 * 359.97438 * 17 16 15 19 19 C 1.41153 * 119.16706 * 180.02562 * 18 17 16 20 20 H 1.07999 * 120.00184 * 359.97438 * 19 18 17 21 21 C 1.40045 * 119.99823 * 180.02562 * 19 18 17 22 22 N 1.30730 * 120.00049 * 359.72575 * 21 19 18 23 23 Si 1.86795 * 119.99981 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47274 * 90.00237 * 23 21 19 25 25 H 1.48504 * 109.47383 * 209.99909 * 23 21 19 26 26 H 1.48502 * 109.47297 * 329.99872 * 23 21 19 27 27 N 1.33599 * 121.65831 * 0.27830 * 18 17 16 28 28 C 1.31651 * 120.79256 * 359.43897 * 27 18 17 29 29 H 1.08004 * 119.99872 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.00059 * 179.97438 * 1 2 3 31 31 H 1.07996 * 120.00222 * 179.97438 * 2 1 3 32 32 H 1.08999 * 109.47623 * 14.99646 * 3 2 1 33 33 H 1.09001 * 109.47105 * 254.99611 * 3 2 1 34 34 H 1.00901 * 110.99920 * 59.99015 * 9 7 5 35 35 H 1.00900 * 111.00320 * 183.94970 * 9 7 5 36 36 H 1.09010 * 109.46562 * 54.99889 * 10 7 5 37 37 H 1.08997 * 109.46884 * 295.00595 * 10 7 5 38 38 H 1.09002 * 109.47658 * 60.00113 * 11 10 7 39 39 H 1.09006 * 109.47029 * 300.00105 * 11 10 7 40 40 H 1.09003 * 109.47442 * 59.99519 * 12 11 10 41 41 H 1.09006 * 109.46800 * 299.99842 * 12 11 10 42 42 H 1.08997 * 109.46847 * 59.99675 * 13 12 11 43 43 H 1.08998 * 109.47051 * 300.00059 * 13 12 11 44 44 H 0.97000 * 120.00052 * 0.02562 * 14 13 12 45 45 H 1.07995 * 120.43433 * 359.97438 * 16 15 14 46 46 H 0.97000 * 120.00283 * 180.02562 * 22 21 19 47 47 H 1.08001 * 120.43562 * 180.25207 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1437 1.2404 0.9681 5 6 3.9171 2.3304 1.0921 6 8 3.6989 3.3062 0.4138 7 6 5.0582 2.3368 2.0765 8 1 5.5580 1.3683 2.0596 9 7 6.0157 3.3885 1.7094 10 6 4.5176 2.6074 3.4821 11 6 5.6560 2.4906 4.4975 12 6 5.1154 2.7605 5.9031 13 6 6.2539 2.6445 6.9185 14 7 5.7364 2.9035 8.2643 15 6 6.5903 2.8549 9.3576 16 6 6.1122 3.0994 10.6514 17 7 6.9504 3.0454 11.6654 18 6 8.2413 2.7613 11.4712 19 6 9.1096 2.7118 12.5829 20 1 8.7280 2.9028 13.5751 21 6 10.4661 2.4161 12.3993 22 7 10.9271 2.1806 11.1989 23 14 11.6151 2.3499 13.8706 24 1 11.6432 0.9686 14.4150 25 1 12.9833 2.7435 13.4483 26 1 11.1322 3.2851 14.9183 27 7 8.7319 2.5277 10.2507 28 6 7.9496 2.5597 9.1923 29 1 -0.5400 0.9354 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3855 2.1162 0.2659 33 1 2.4756 1.4868 -0.9926 34 1 5.5761 4.2967 1.7176 35 1 6.8219 3.3714 2.3160 36 1 3.7425 1.8786 3.7197 37 1 4.0964 3.6119 3.5222 38 1 6.4311 3.2193 4.2599 39 1 6.0771 1.4860 4.4573 40 1 4.3405 2.0317 6.1405 41 1 4.6940 3.7650 5.9435 42 1 7.0284 3.3736 6.6808 43 1 6.6758 1.6402 6.8781 44 1 4.7970 3.1091 8.3915 45 1 5.0700 3.3300 10.8150 46 1 11.8666 1.9755 11.0717 47 1 8.3516 2.3660 8.2088 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171069747.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:58 Heat of formation + Delta-G solvation = -48.412479 kcal Electronic energy + Delta-G solvation = -26639.010167 eV Core-core repulsion = 22628.175772 eV Total energy + Delta-G solvation = -4010.834395 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.68681 -40.85250 -38.52656 -37.79309 -36.85243 -35.37904 -34.97464 -33.91586 -33.63548 -31.17685 -29.71850 -28.50782 -27.21640 -26.14396 -25.01114 -23.72366 -22.59213 -22.05928 -21.54567 -20.92075 -19.70945 -19.08672 -18.12574 -17.99703 -17.42113 -17.16431 -17.01207 -16.77409 -16.23746 -16.05851 -15.85878 -15.42390 -15.28581 -15.01492 -14.86247 -14.45132 -14.41412 -13.99943 -13.93732 -13.75355 -13.42572 -13.07043 -12.97321 -12.88053 -12.65803 -12.52087 -12.35923 -12.17951 -12.07762 -11.97102 -11.90091 -11.62848 -11.46463 -11.36316 -11.21663 -11.11607 -10.68434 -10.46964 -9.83006 -9.20971 -8.47521 -8.29769 -6.31234 0.89159 0.97821 1.03791 1.07498 1.43898 1.54960 1.59345 1.79357 2.28236 2.83121 2.86682 3.46989 3.60008 3.77834 3.85162 3.93314 3.96828 3.99007 3.99975 4.05821 4.12753 4.18951 4.27400 4.35941 4.44188 4.47650 4.50031 4.61274 4.74063 4.80804 4.85972 4.90764 4.94060 5.07669 5.19829 5.30966 5.33632 5.34966 5.38745 5.57324 5.61127 5.63911 5.97339 6.25457 6.42290 6.55294 6.60928 6.65914 6.81403 7.12194 7.35070 8.31536 8.52590 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.024268 B = 0.001491 C = 0.001453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.497474 B =18775.512554 C =19266.956207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.176 4.176 3 C 0.090 3.910 4 O -0.356 6.356 5 C 0.468 3.532 6 O -0.531 6.531 7 C 0.108 3.892 8 H 0.131 0.869 9 N -0.839 5.839 10 C -0.139 4.139 11 C -0.110 4.110 12 C -0.115 4.115 13 C 0.132 3.868 14 N -0.740 5.740 15 C -0.007 4.007 16 C 0.083 3.917 17 N -0.589 5.589 18 C 0.335 3.665 19 C -0.459 4.459 20 H 0.081 0.919 21 C 0.026 3.974 22 N -0.764 5.764 23 Si 0.994 3.006 24 H -0.262 1.262 25 H -0.264 1.264 26 H -0.260 1.260 27 N -0.506 5.506 28 C 0.075 3.925 29 H 0.105 0.895 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.351 0.649 35 H 0.368 0.632 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.043 0.957 43 H 0.045 0.955 44 H 0.399 0.601 45 H 0.163 0.837 46 H 0.279 0.721 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.240 -3.276 -22.704 27.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.194 4.194 3 C 0.016 3.984 4 O -0.272 6.272 5 C 0.311 3.689 6 O -0.419 6.419 7 C -0.005 4.005 8 H 0.149 0.851 9 N -0.375 5.375 10 C -0.179 4.179 11 C -0.148 4.148 12 C -0.153 4.153 13 C 0.008 3.992 14 N -0.377 5.377 15 C -0.114 4.114 16 C -0.091 4.091 17 N -0.308 5.308 18 C 0.092 3.908 19 C -0.497 4.497 20 H 0.099 0.901 21 C -0.195 4.195 22 N -0.389 5.389 23 Si 0.814 3.186 24 H -0.187 1.187 25 H -0.189 1.189 26 H -0.183 1.183 27 N -0.223 5.223 28 C -0.101 4.101 29 H 0.123 0.877 30 H 0.144 0.856 31 H 0.144 0.856 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.165 0.835 35 H 0.185 0.815 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.234 0.766 45 H 0.180 0.820 46 H 0.089 0.911 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -14.320 -3.502 -23.103 27.406 hybrid contribution -0.745 0.624 0.538 1.111 sum -15.065 -2.879 -22.565 27.284 Atomic orbital electron populations 1.24155 0.95063 1.03793 0.96373 1.22679 0.96109 0.97052 1.03514 1.22211 0.86777 0.97923 0.91442 1.86520 1.41958 1.40599 1.58161 1.24135 0.82545 0.80084 0.82118 1.90643 1.70120 1.36026 1.45135 1.21064 0.89587 1.00010 0.89863 0.85086 1.58551 1.10372 1.07777 1.60805 1.22237 0.99759 1.03353 0.92513 1.21456 0.97404 1.03491 0.92445 1.21607 0.97284 1.02879 0.93488 1.21218 0.97045 0.99404 0.81567 1.43652 1.09370 1.81821 1.02815 1.19216 0.92958 1.09194 0.90034 1.22818 0.99572 0.99360 0.87351 1.68530 1.05169 1.22097 1.35033 1.20129 0.87168 0.92230 0.91310 1.19352 0.93076 1.44113 0.93109 0.90086 1.26885 0.99802 0.92666 1.00121 1.70218 1.15356 1.29361 1.23941 0.85050 0.76650 0.79624 0.77324 1.18686 1.18852 1.18345 1.69186 1.36735 1.17758 0.98618 1.23077 0.89272 0.99196 0.98518 0.87651 0.85641 0.85571 0.90735 0.90491 0.83492 0.81451 0.89776 0.91287 0.90834 0.90202 0.90726 0.91092 0.93837 0.93723 0.76569 0.81994 0.91076 0.83651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 14.31 67.78 0.97 -0.20 16 2 C -0.18 -1.82 9.90 25.64 0.25 -1.57 16 3 C 0.09 1.26 5.88 71.24 0.42 1.68 16 4 O -0.36 -5.98 10.20 -51.41 -0.52 -6.50 16 5 C 0.47 8.53 7.21 71.24 0.51 9.04 16 6 O -0.53 -12.77 16.00 21.97 0.35 -12.42 16 7 C 0.11 1.37 3.32 44.17 0.15 1.52 16 8 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 9 N -0.84 -11.15 8.93 -171.80 -1.53 -12.69 16 10 C -0.14 -1.48 4.84 30.59 0.15 -1.33 16 11 C -0.11 -1.19 4.98 30.59 0.15 -1.04 16 12 C -0.11 -1.68 5.33 30.59 0.16 -1.51 16 13 C 0.13 3.03 4.94 86.38 0.43 3.46 16 14 N -0.74 -21.56 5.71 -338.15 -1.93 -23.49 16 15 C -0.01 -0.30 6.72 38.93 0.26 -0.04 16 16 C 0.08 3.69 11.20 85.16 0.95 4.64 16 17 N -0.59 -32.09 10.34 -193.42 -2.00 -34.09 16 18 C 0.34 19.90 7.35 134.95 0.99 20.89 16 19 C -0.46 -26.86 9.35 23.42 0.22 -26.64 16 20 H 0.08 4.62 7.85 -2.91 -0.02 4.60 16 21 C 0.03 1.40 5.50 85.30 0.47 1.87 16 22 N -0.76 -42.19 11.41 21.84 0.25 -41.94 16 23 Si 0.99 39.79 29.56 68.60 2.03 41.82 16 24 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 25 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 26 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 27 N -0.51 -28.90 7.84 -193.43 -1.52 -30.41 16 28 C 0.07 3.55 10.58 85.17 0.90 4.45 16 29 H 0.11 0.66 7.90 -2.91 -0.02 0.64 16 30 H 0.13 0.54 8.06 -2.91 -0.02 0.51 16 31 H 0.13 1.16 8.06 -2.91 -0.02 1.14 16 32 H 0.07 1.03 7.85 -2.39 -0.02 1.01 16 33 H 0.08 1.10 8.13 -2.39 -0.02 1.08 16 34 H 0.35 4.93 8.58 -89.69 -0.77 4.16 16 35 H 0.37 3.53 7.55 -89.69 -0.68 2.85 16 36 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 37 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.07 0.73 6.87 -2.39 -0.02 0.71 16 39 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 40 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 42 H 0.04 1.06 7.98 -2.39 -0.02 1.05 16 43 H 0.04 1.09 7.99 -2.39 -0.02 1.07 16 44 H 0.40 9.64 8.50 -92.71 -0.79 8.85 16 45 H 0.16 5.81 8.06 -2.91 -0.02 5.79 16 46 H 0.28 13.79 8.29 -92.71 -0.77 13.02 16 47 H 0.15 6.05 6.88 -2.91 -0.02 6.03 16 Total: -1.00 -75.13 400.12 0.88 -74.24 By element: Atomic # 1 Polarization: 31.48 SS G_CDS: -1.23 Total: 30.25 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: 6.99 Total: 15.21 kcal Atomic # 7 Polarization: -135.88 SS G_CDS: -6.73 Total: -142.61 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.17 Total: -18.92 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.82 kcal Total: -75.13 0.88 -74.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171069747.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.829 kcal (2) G-P(sol) polarization free energy of solvation -75.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds