Wall clock time and date at job start Tue Mar 31 2020 19:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 110.01925 * 2 1 4 4 C 1.54265 * 110.03204 * 238.60570 * 2 1 3 5 5 C 1.54889 * 104.19809 * 217.10962 * 4 2 1 6 6 C 1.54892 * 102.74885 * 37.93901 * 5 4 2 7 7 H 1.09004 * 110.48278 * 80.87331 * 6 5 4 8 8 C 1.50696 * 110.48787 * 203.38045 * 6 5 4 9 9 O 1.21284 * 120.00109 * 118.54965 * 8 6 5 10 10 N 1.34777 * 120.00137 * 298.55180 * 8 6 5 11 11 C 1.46506 * 119.99873 * 180.02562 * 10 8 6 12 12 C 1.50699 * 109.46928 * 179.97438 * 11 10 8 13 13 N 1.31800 * 119.09202 * 89.99880 * 12 11 10 14 14 C 1.32794 * 120.71374 * 179.97438 * 13 12 11 15 15 O 1.35515 * 120.50968 * 180.02562 * 14 13 12 16 16 C 1.39424 * 118.97597 * 0.02562 * 14 13 12 17 17 C 1.38184 * 118.34945 * 359.97438 * 16 14 13 18 18 C 1.50699 * 120.40850 * 180.02562 * 17 16 14 19 19 N 1.46500 * 109.47423 * 94.99648 * 18 17 16 20 20 C 1.36935 * 120.00100 * 179.97438 * 19 18 17 21 21 H 1.08006 * 120.00269 * 0.02562 * 20 19 18 22 22 C 1.38815 * 119.99784 * 180.02562 * 20 19 18 23 23 N 1.31616 * 120.00053 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99643 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47030 * 60.00079 * 24 22 20 26 26 H 1.48506 * 109.46835 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47117 * 299.99993 * 24 22 20 28 28 N 1.31752 * 119.09329 * 269.72502 * 12 11 10 29 29 C 1.53873 * 110.03161 * 121.44264 * 2 1 3 30 30 H 1.09000 * 109.47546 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47405 * 299.94099 * 1 2 3 32 32 H 1.09005 * 109.47291 * 59.93714 * 1 2 3 33 33 H 1.09003 * 110.48799 * 98.43113 * 4 2 1 34 34 H 1.08998 * 110.48666 * 335.78919 * 4 2 1 35 35 H 1.09004 * 110.75494 * 279.63093 * 5 4 2 36 36 H 1.08992 * 110.91846 * 156.33500 * 5 4 2 37 37 H 0.96999 * 120.00047 * 359.97438 * 10 8 6 38 38 H 1.09004 * 109.47073 * 299.99562 * 11 10 8 39 39 H 1.09000 * 109.47212 * 59.99645 * 11 10 8 40 40 H 0.96696 * 113.99997 * 90.00597 * 15 14 13 41 41 H 1.08005 * 120.81884 * 179.97438 * 16 14 13 42 42 H 1.09007 * 109.47348 * 215.00235 * 18 17 16 43 43 H 1.09000 * 109.47280 * 334.99457 * 18 17 16 44 44 H 0.97000 * 119.99814 * 0.02562 * 19 18 17 45 45 H 0.97002 * 119.99566 * 179.97438 * 23 22 20 46 46 H 1.09007 * 110.03191 * 359.97438 * 29 2 1 47 47 H 1.09008 * 110.03148 * 238.57007 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0584 -0.7550 -1.2371 5 6 3.3136 -1.5006 -0.7197 6 6 2.8873 -1.9410 0.7028 7 1 2.2790 -2.8443 0.6561 8 6 4.0988 -2.1669 1.5701 9 8 4.2624 -1.4989 2.5691 10 7 5.0005 -3.1112 1.2357 11 6 6.1779 -3.3311 2.0793 12 6 7.0196 -4.4332 1.4895 13 7 7.9637 -4.1248 0.6231 14 6 8.7245 -5.0702 0.0839 15 8 9.6944 -4.7483 -0.8061 16 6 8.5101 -6.3989 0.4476 17 6 7.5095 -6.6764 1.3594 18 6 7.2382 -8.0962 1.7856 19 7 7.9630 -8.3805 3.0266 20 6 7.8675 -9.6169 3.6074 21 1 7.2580 -10.3826 3.1505 22 6 8.5539 -9.8860 4.7836 23 7 9.2962 -8.9528 5.3406 24 14 8.4241 -11.5729 5.5755 25 1 8.9179 -12.6040 4.6278 26 1 9.2449 -11.6033 6.8128 27 1 7.0058 -11.8521 5.9159 28 7 6.7950 -5.6780 1.8583 29 6 2.0570 -0.7541 1.2334 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5129 0.8905 32 1 -0.3634 0.5148 -0.8894 33 1 2.3297 -0.0528 -2.0255 34 1 1.3142 -1.4653 -1.5972 35 1 4.1709 -0.8289 -0.6754 36 1 3.5356 -2.3672 -1.3422 37 1 4.8694 -3.6456 0.4370 38 1 6.7643 -2.4137 2.1311 39 1 5.8585 -3.6152 3.0820 40 1 10.5542 -4.5672 -0.4025 41 1 9.1112 -7.1917 0.0271 42 1 6.1688 -8.2278 1.9511 43 1 7.5718 -8.7800 1.0051 44 1 8.5101 -7.6927 3.4371 45 1 9.7756 -9.1409 6.1627 46 1 1.2228 -1.1197 1.8322 47 1 2.6867 -0.0961 1.8324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264583811.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:57 Heat of formation + Delta-G solvation = -58.808564 kcal Electronic energy + Delta-G solvation = -27814.888859 eV Core-core repulsion = 23803.603656 eV Total energy + Delta-G solvation = -4011.285203 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.46592 -41.17334 -38.89497 -38.58251 -37.16498 -35.96911 -34.65739 -33.23434 -32.66396 -32.04708 -29.89836 -28.74852 -28.21776 -26.05176 -25.25160 -24.18297 -23.15943 -22.70309 -21.22054 -20.38850 -19.91367 -19.43786 -18.82886 -18.52725 -17.57110 -16.88921 -16.73865 -16.55940 -16.45012 -16.03018 -15.74205 -15.58982 -15.40879 -14.93377 -14.75671 -14.44514 -14.34435 -14.14137 -13.99102 -13.88029 -13.55045 -13.17908 -12.98478 -12.97510 -12.72499 -12.69107 -12.18500 -12.10737 -11.98603 -11.81963 -11.71812 -11.64088 -11.55891 -11.53400 -11.30308 -11.02230 -10.99977 -10.58004 -10.43837 -10.28580 -9.09419 -7.97615 -5.29138 -0.42404 -0.23136 1.49239 1.52599 1.55532 1.58383 1.93060 2.08478 2.51541 2.62759 2.73404 3.11014 3.37379 3.48167 3.56251 3.74023 3.80170 3.87728 4.08229 4.09790 4.13732 4.22363 4.35470 4.41436 4.44517 4.53431 4.55761 4.57944 4.71043 4.74892 4.78738 4.88172 4.96354 5.00869 5.09337 5.12974 5.15212 5.17375 5.30930 5.35788 5.42461 5.47977 5.58129 5.80141 6.20960 6.37498 6.44638 6.87346 7.11036 7.28598 7.95658 8.20747 9.25488 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013736 B = 0.002247 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.906998 B =12459.101840 C =13682.702220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 H 0.069 0.931 4 C -0.113 4.113 5 C -0.112 4.112 6 C -0.108 4.108 7 H 0.121 0.879 8 C 0.522 3.478 9 O -0.579 6.579 10 N -0.710 5.710 11 C 0.200 3.800 12 C 0.319 3.681 13 N -0.536 5.536 14 C 0.365 3.635 15 O -0.473 6.473 16 C -0.211 4.211 17 C 0.183 3.817 18 C 0.198 3.802 19 N -0.735 5.735 20 C -0.246 4.246 21 H 0.086 0.914 22 C -0.074 4.074 23 N -0.970 5.970 24 Si 0.979 3.021 25 H -0.272 1.272 26 H -0.298 1.298 27 H -0.278 1.278 28 N -0.516 5.516 29 C -0.108 4.108 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.062 0.938 36 H 0.088 0.912 37 H 0.411 0.589 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.430 0.570 41 H 0.175 0.825 42 H 0.043 0.957 43 H 0.067 0.933 44 H 0.372 0.628 45 H 0.252 0.748 46 H 0.070 0.930 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.452 15.587 -18.140 26.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.115 4.115 3 H 0.088 0.912 4 C -0.151 4.151 5 C -0.150 4.150 6 C -0.129 4.129 7 H 0.139 0.861 8 C 0.310 3.690 9 O -0.458 6.458 10 N -0.363 5.363 11 C 0.074 3.926 12 C 0.049 3.951 13 N -0.262 5.262 14 C 0.176 3.824 15 O -0.284 6.284 16 C -0.235 4.235 17 C 0.039 3.961 18 C 0.072 3.928 19 N -0.379 5.379 20 C -0.377 4.377 21 H 0.104 0.896 22 C -0.267 4.267 23 N -0.620 5.620 24 Si 0.807 3.193 25 H -0.198 1.198 26 H -0.225 1.225 27 H -0.204 1.204 28 N -0.233 5.233 29 C -0.146 4.146 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.107 0.893 37 H 0.247 0.753 38 H 0.114 0.886 39 H 0.103 0.897 40 H 0.294 0.706 41 H 0.193 0.807 42 H 0.061 0.939 43 H 0.084 0.916 44 H 0.203 0.797 45 H 0.060 0.940 46 H 0.089 0.911 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.279 16.492 -17.488 26.993 hybrid contribution 1.478 -1.376 0.754 2.155 sum -10.802 15.117 -16.734 25.005 Atomic orbital electron populations 1.21875 0.94013 1.02199 1.01941 1.21755 0.96476 0.99267 0.94020 0.91243 1.22436 0.96439 0.99210 0.96993 1.22510 0.98754 1.01038 0.92666 1.22234 0.93175 1.01911 0.95577 0.86110 1.21180 0.84295 0.78059 0.85449 1.90688 1.77562 1.48596 1.28959 1.45763 1.22794 1.38846 1.28847 1.19740 0.85245 0.93778 0.93838 1.22813 0.91432 0.90823 0.89991 1.67766 1.08026 1.39526 1.10892 1.19435 0.89552 0.87517 0.85853 1.84655 1.22095 1.90712 1.30978 1.23081 1.01298 0.98932 1.00166 1.21903 0.88992 0.95827 0.89363 1.19774 0.96704 0.86919 0.89443 1.42324 1.56840 1.13016 1.25687 1.19617 1.23377 0.90327 1.04411 0.89619 1.25640 1.00223 1.01770 0.99034 1.69828 1.35832 1.34836 1.21543 0.85141 0.77410 0.79390 0.77357 1.19772 1.22495 1.20416 1.68112 1.28827 1.00330 1.26061 1.22155 0.98772 0.95678 0.98007 0.92161 0.92956 0.91814 0.90483 0.89959 0.91922 0.89332 0.75348 0.88624 0.89700 0.70613 0.80716 0.93876 0.91553 0.79691 0.93975 0.91108 0.92373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 8.84 71.98 0.64 -0.85 16 2 C -0.10 -1.23 3.50 -10.07 -0.04 -1.26 16 3 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 4 C -0.11 -1.16 6.36 31.67 0.20 -0.96 16 5 C -0.11 -1.41 6.26 31.89 0.20 -1.21 16 6 C -0.11 -1.77 3.25 -10.47 -0.03 -1.81 16 7 H 0.12 1.57 8.14 -2.38 -0.02 1.55 16 8 C 0.52 12.56 7.15 87.66 0.63 13.19 16 9 O -0.58 -18.75 15.46 -3.04 -0.05 -18.80 16 10 N -0.71 -16.11 5.49 -466.77 -2.56 -18.68 16 11 C 0.20 5.45 6.10 85.63 0.52 5.97 16 12 C 0.32 9.51 7.01 138.76 0.97 10.49 16 13 N -0.54 -15.14 10.36 -300.69 -3.12 -18.25 16 14 C 0.36 9.39 7.83 84.83 0.66 10.06 16 15 O -0.47 -9.28 13.58 -88.18 -1.20 -10.47 16 16 C -0.21 -5.79 9.79 22.54 0.22 -5.57 16 17 C 0.18 6.13 6.18 42.44 0.26 6.39 16 18 C 0.20 7.51 6.61 85.63 0.57 8.08 16 19 N -0.74 -36.36 5.59 -347.16 -1.94 -38.31 16 20 C -0.25 -13.26 9.99 84.03 0.84 -12.42 16 21 H 0.09 4.31 7.83 -2.91 -0.02 4.29 16 22 C -0.07 -4.18 5.50 84.86 0.47 -3.72 16 23 N -0.97 -58.91 13.06 21.65 0.28 -58.63 16 24 Si 0.98 45.08 29.55 68.60 2.03 47.11 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 26 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 27 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 28 N -0.52 -17.69 10.27 -176.24 -1.81 -19.50 16 29 C -0.11 -1.87 5.81 31.32 0.18 -1.69 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 32 H 0.06 0.54 8.14 -2.38 -0.02 0.53 16 33 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.08 0.68 7.85 -2.39 -0.02 0.66 16 35 H 0.06 0.94 8.05 -2.38 -0.02 0.92 16 36 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.41 7.73 8.45 -92.71 -0.78 6.94 16 38 H 0.10 2.57 8.14 -2.38 -0.02 2.55 16 39 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 40 H 0.43 4.25 9.06 -74.06 -0.67 3.58 16 41 H 0.18 4.04 8.06 -2.91 -0.02 4.02 16 42 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 43 H 0.07 2.24 8.06 -2.39 -0.02 2.22 16 44 H 0.37 20.15 7.66 -92.71 -0.71 19.44 16 45 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 46 H 0.07 1.18 7.67 -2.38 -0.02 1.16 16 47 H 0.06 1.31 6.90 -2.38 -0.02 1.30 16 Total: -1.00 -72.74 394.19 -3.22 -75.96 By element: Atomic # 1 Polarization: 36.02 SS G_CDS: -1.15 Total: 34.87 kcal Atomic # 6 Polarization: 18.41 SS G_CDS: 6.29 Total: 24.70 kcal Atomic # 7 Polarization: -144.22 SS G_CDS: -9.15 Total: -153.37 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -1.24 Total: -29.27 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -72.74 -3.22 -75.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264583811.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.150 kcal (2) G-P(sol) polarization free energy of solvation -72.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds